Wall clock time and date at job start Mon Mar 30 2020 02:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86792 * 119.99737 * 2 1 4 4 H 1.48508 * 109.47058 * 264.99337 * 3 2 1 5 5 H 1.48503 * 109.47520 * 24.98848 * 3 2 1 6 6 H 1.48497 * 109.47564 * 144.99336 * 3 2 1 7 7 C 1.37877 * 119.99959 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99737 * 189.38429 * 7 2 1 9 9 C 1.50694 * 120.00249 * 9.39119 * 7 2 1 10 10 H 1.08996 * 109.47096 * 305.44335 * 9 7 2 11 11 C 1.52998 * 109.47070 * 65.44056 * 9 7 2 12 12 N 1.46897 * 109.47322 * 183.20553 * 11 9 7 13 13 C 1.50702 * 109.47313 * 185.44190 * 9 7 2 14 14 N 1.34885 * 126.11132 * 300.02712 * 13 9 7 15 15 H 0.96999 * 126.03541 * 359.96387 * 14 13 9 16 16 N 1.40025 * 107.93523 * 179.97438 * 14 13 9 17 17 C 1.31037 * 108.24464 * 359.97438 * 16 14 13 18 18 C 1.35455 * 126.11296 * 119.71039 * 13 9 7 19 19 C 1.51289 * 142.53035 * 0.80717 * 18 13 9 20 20 C 1.54343 * 105.27161 * 162.21502 * 19 18 13 21 21 C 1.51319 * 142.35632 * 179.97438 * 17 16 14 22 22 H 0.96992 * 120.00454 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47704 * 303.21007 * 11 9 7 24 24 H 1.09003 * 109.47204 * 63.21174 * 11 9 7 25 25 H 1.00904 * 111.00047 * 56.04382 * 12 11 9 26 26 H 1.00899 * 111.00824 * 180.02562 * 12 11 9 27 27 H 1.09002 * 110.42484 * 43.17362 * 19 18 13 28 28 H 1.09003 * 110.18189 * 281.12975 * 19 18 13 29 29 H 1.09006 * 110.76529 * 268.03766 * 20 19 18 30 30 H 1.08994 * 110.92909 * 144.71225 * 20 19 18 31 31 H 1.08998 * 110.29531 * 316.16613 * 21 17 16 32 32 H 1.09005 * 110.29278 * 78.29288 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.6024 1.9853 -1.3948 5 1 1.3976 2.6810 0.5914 6 1 3.4897 1.4732 0.8031 7 6 2.0045 -1.1941 0.0005 8 1 3.0737 -1.2002 0.1531 9 6 1.2663 -2.4905 -0.2118 10 1 0.4573 -2.5711 0.5142 11 6 0.6861 -2.5210 -1.6272 12 7 -0.0979 -3.7500 -1.8087 13 6 2.2178 -3.6455 -0.0340 14 7 3.3346 -3.8737 -0.7552 15 1 3.6674 -3.3233 -1.4812 16 7 3.9285 -5.0457 -0.2711 17 6 3.1907 -5.5046 0.7098 18 6 2.1078 -4.6367 0.8827 19 6 1.2294 -5.1405 2.0067 20 6 1.6400 -6.6138 2.2143 21 6 3.1001 -6.6322 1.7148 22 1 -0.4850 0.8399 -0.0004 23 1 0.0421 -1.6541 -1.7748 24 1 1.4985 -2.4979 -2.3535 25 1 -0.8180 -3.8266 -1.1059 26 1 -0.4918 -3.7941 -2.7366 27 1 0.1782 -5.0769 1.7258 28 1 1.4131 -4.5654 2.9142 29 1 1.0176 -7.2768 1.6131 30 1 1.5881 -6.8877 3.2679 31 1 3.3230 -7.5851 1.2350 32 1 3.7857 -6.4558 2.5437 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260365069.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:59 Heat of formation + Delta-G solvation = 39.795682 kcal Electronic energy + Delta-G solvation = -15177.516595 eV Core-core repulsion = 12751.900246 eV Total energy + Delta-G solvation = -2425.616350 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.23692 -37.45126 -36.56366 -34.25342 -32.30949 -30.21855 -29.52522 -27.42540 -25.87440 -23.74880 -22.42834 -20.26728 -19.87539 -18.59924 -17.72137 -16.67885 -16.43427 -16.20518 -15.51081 -14.86996 -14.77984 -14.16930 -14.11499 -13.86321 -13.56591 -13.13880 -12.89943 -12.57404 -12.48265 -12.12188 -11.85708 -11.70294 -11.65481 -11.46665 -11.07930 -10.57849 -9.92524 -9.41956 -8.93029 -8.24456 -6.35702 1.25839 1.37686 1.40619 1.48773 2.05306 2.12119 2.38046 3.05243 3.43862 3.93335 4.05250 4.34518 4.38660 4.43553 4.56073 4.81716 4.87900 4.97138 5.01558 5.09695 5.24341 5.32761 5.37789 5.44983 5.52753 5.68763 5.78847 5.98209 6.06661 6.39338 6.63679 6.67730 6.80476 7.04601 7.32421 8.82048 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032459 B = 0.008830 C = 0.008440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.416059 B = 3170.382318 C = 3316.866172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.030 3.970 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.047 0.953 9 C 0.111 3.889 10 H 0.028 0.972 11 C 0.086 3.914 12 N -0.848 5.848 13 C 0.166 3.834 14 N -0.474 5.474 15 H 0.437 0.563 16 N -0.331 5.331 17 C 0.038 3.962 18 C -0.311 4.311 19 C -0.035 4.035 20 C -0.101 4.101 21 C -0.025 4.025 22 H 0.266 0.734 23 H 0.026 0.974 24 H 0.042 0.958 25 H 0.338 0.662 26 H 0.338 0.662 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.078 0.922 30 H 0.108 0.892 31 H 0.091 0.909 32 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.621 -8.926 1.970 9.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.172 4.172 3 Si 0.777 3.223 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.200 1.200 7 C -0.577 4.577 8 H 0.066 0.934 9 C 0.090 3.910 10 H 0.046 0.954 11 C -0.045 4.045 12 N -0.377 5.377 13 C 0.037 3.963 14 N -0.181 5.181 15 H 0.281 0.719 16 N -0.154 5.154 17 C -0.129 4.129 18 C -0.322 4.322 19 C -0.074 4.074 20 C -0.138 4.138 21 C -0.064 4.064 22 H 0.075 0.925 23 H 0.044 0.956 24 H 0.061 0.939 25 H 0.149 0.851 26 H 0.150 0.850 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.126 0.874 31 H 0.110 0.890 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.214 -9.383 1.401 9.742 hybrid contribution -0.971 2.528 -0.403 2.738 sum 1.243 -6.855 0.998 7.038 Atomic orbital electron populations 1.70023 1.06998 1.27882 1.49439 1.25600 0.95576 1.02029 0.93963 0.85663 0.78606 0.79405 0.78587 1.19621 1.20608 1.20019 1.21163 0.93882 0.91350 1.51306 0.93435 1.17391 0.91611 0.88128 0.93831 0.95414 1.21606 0.95925 0.89742 0.97214 1.58855 1.30947 1.40015 1.07847 1.20720 0.88690 0.95781 0.91123 1.46136 1.19823 1.21210 1.30959 0.71930 1.76736 1.22420 0.99871 1.16411 1.23853 0.93939 0.99582 0.95525 1.20919 1.04661 1.00065 1.06578 1.20306 0.97229 0.96196 0.93661 1.22325 0.93982 0.94587 1.02939 1.20639 0.98905 0.93143 0.93740 0.92467 0.95604 0.93939 0.85054 0.85031 0.92269 0.92083 0.90311 0.87406 0.89023 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.27 12.15 21.45 0.26 -49.01 16 2 C 0.03 1.56 5.18 84.65 0.44 1.99 16 3 Si 0.95 42.01 29.55 68.60 2.03 44.04 16 4 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 7 C -0.54 -28.62 8.47 25.60 0.22 -28.41 16 8 H 0.05 2.57 7.76 -2.91 -0.02 2.55 16 9 C 0.11 5.44 2.21 -12.29 -0.03 5.41 16 10 H 0.03 1.51 8.06 -2.39 -0.02 1.49 16 11 C 0.09 3.87 6.05 86.30 0.52 4.39 16 12 N -0.85 -31.98 9.29 -186.73 -1.73 -33.71 16 13 C 0.17 7.56 5.34 41.45 0.22 7.78 16 14 N -0.47 -20.52 7.35 -47.96 -0.35 -20.87 16 15 H 0.44 17.45 8.96 -213.37 -1.91 15.54 16 16 N -0.33 -14.07 12.70 -46.81 -0.59 -14.67 16 17 C 0.04 1.47 8.10 43.27 0.35 1.82 16 18 C -0.31 -12.95 6.76 -19.93 -0.13 -13.08 16 19 C -0.04 -1.17 6.76 30.49 0.21 -0.96 16 20 C -0.10 -2.35 7.06 31.50 0.22 -2.12 16 21 C -0.03 -0.66 6.76 30.49 0.21 -0.46 16 22 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 23 H 0.03 1.27 6.83 -2.39 -0.02 1.26 16 24 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.34 12.46 8.99 -89.69 -0.81 11.65 16 26 H 0.34 10.88 9.08 -89.70 -0.81 10.07 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.08 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.10 2.22 8.14 -2.38 -0.02 2.20 16 Total: -1.00 -62.02 270.03 -0.55 -62.57 By element: Atomic # 1 Polarization: 37.66 SS G_CDS: -2.38 Total: 35.28 kcal Atomic # 6 Polarization: -25.86 SS G_CDS: 2.22 Total: -23.64 kcal Atomic # 7 Polarization: -115.83 SS G_CDS: -2.42 Total: -118.25 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -62.02 -0.55 -62.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365069.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.370 kcal (2) G-P(sol) polarization free energy of solvation -62.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds