Wall clock time and date at job start Mon Mar 30 2020 03:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00388 * 2 1 4 4 H 1.48498 * 109.47143 * 270.00389 * 3 2 1 5 5 H 1.48506 * 109.46852 * 30.00105 * 3 2 1 6 6 H 1.48498 * 109.47606 * 149.99947 * 3 2 1 7 7 C 1.37879 * 119.99554 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99273 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00459 * 0.02562 * 7 2 1 10 10 H 1.09008 * 109.46681 * 299.99698 * 9 7 2 11 11 C 1.52993 * 109.47209 * 59.99650 * 9 7 2 12 12 N 1.46905 * 109.47039 * 185.00333 * 11 9 7 13 13 C 1.50701 * 109.47359 * 180.02562 * 9 7 2 14 14 C 1.35319 * 126.03908 * 300.02276 * 13 9 7 15 15 N 1.34948 * 107.74653 * 179.97438 * 14 13 9 16 16 H 0.96995 * 126.03773 * 180.02562 * 15 14 13 17 17 N 1.40087 * 107.92551 * 359.97438 * 15 14 13 18 18 C 1.30841 * 108.20354 * 359.71977 * 17 15 14 19 19 C 1.50697 * 125.89899 * 180.26099 * 18 17 15 20 20 C 1.53002 * 117.50145 * 8.95235 * 19 18 17 21 21 C 1.53011 * 117.49897 * 300.29373 * 19 18 17 22 22 H 0.96998 * 119.99988 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47393 * 65.00614 * 11 9 7 24 24 H 1.08998 * 109.47408 * 305.00260 * 11 9 7 25 25 H 1.00901 * 110.99869 * 56.04956 * 12 11 9 26 26 H 1.00896 * 110.99543 * 180.02562 * 12 11 9 27 27 H 1.07997 * 126.12244 * 0.02562 * 14 13 9 28 28 H 1.08998 * 115.55240 * 154.62331 * 19 18 17 29 29 H 1.09004 * 117.49462 * 0.02562 * 20 19 18 30 30 H 1.08997 * 117.50285 * 145.01667 * 20 19 18 31 31 H 1.08990 * 117.49909 * 214.97888 * 21 19 18 32 32 H 1.08993 * 117.49269 * 359.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 1 0.6240 -2.5575 0.8881 11 6 0.3718 -2.5794 -1.2512 12 7 -0.4516 -3.7946 -1.1934 13 6 2.2302 -3.6447 -0.0015 14 6 3.1644 -3.8936 -0.9482 15 7 3.8360 -5.0051 -0.5812 16 1 4.5639 -5.4197 -1.0703 17 7 3.2971 -5.4537 0.6316 18 6 2.3391 -4.6341 0.9812 19 6 1.4954 -4.7404 2.2253 20 6 1.9080 -5.7769 3.2724 21 6 0.6657 -6.0127 2.4097 22 1 -0.4850 0.8400 0.0004 23 1 1.0038 -2.6106 -2.1388 24 1 -0.2756 -1.7037 -1.2968 25 1 -0.9995 -3.8202 -0.3465 26 1 -1.0414 -3.8708 -2.0085 27 1 3.3414 -3.3073 -1.8378 28 1 1.0680 -3.8044 2.5850 29 1 2.7901 -6.3816 3.0615 30 1 1.7519 -5.5230 4.3208 31 1 -0.3072 -5.9138 2.8909 32 1 0.7299 -6.7725 1.6309 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260365871.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:40 Heat of formation + Delta-G solvation = 71.063960 kcal Electronic energy + Delta-G solvation = -15126.031096 eV Core-core repulsion = 12701.770641 eV Total energy + Delta-G solvation = -2424.260455 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.93514 -37.76831 -36.92856 -34.00127 -32.19508 -31.47102 -28.49674 -25.68466 -24.85137 -23.20871 -22.96363 -20.57431 -19.90107 -18.55832 -18.24090 -16.55653 -16.31365 -16.02083 -15.50667 -15.25772 -14.99824 -14.31973 -13.86250 -13.66210 -13.11848 -12.84217 -12.70998 -12.62332 -12.30214 -12.07323 -11.77603 -11.68475 -11.36169 -11.14243 -10.89233 -10.44364 -9.83933 -9.22500 -8.87363 -8.01607 -6.15742 1.17503 1.42931 1.45431 1.54308 2.10368 2.25906 2.49109 3.19300 3.23990 3.79164 4.00524 4.17279 4.22442 4.36709 4.45593 4.79542 4.84856 4.96802 5.05788 5.18988 5.24373 5.30723 5.37011 5.45247 5.61050 5.91684 6.05885 6.06925 6.37817 6.65788 6.72842 6.83960 7.01586 7.05046 7.51297 8.98850 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027123 B = 0.009250 C = 0.009035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.093196 B = 3026.216048 C = 3098.148942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.018 3.982 3 Si 0.947 3.053 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.047 0.953 9 C 0.126 3.874 10 H 0.004 0.996 11 C 0.081 3.919 12 N -0.845 5.845 13 C -0.182 4.182 14 C 0.044 3.956 15 N -0.477 5.477 16 H 0.446 0.554 17 N -0.325 5.325 18 C 0.095 3.905 19 C -0.098 4.098 20 C -0.156 4.156 21 C -0.146 4.146 22 H 0.260 0.740 23 H 0.035 0.965 24 H 0.035 0.965 25 H 0.332 0.668 26 H 0.331 0.669 27 H 0.180 0.820 28 H 0.107 0.893 29 H 0.092 0.908 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.199 -8.073 0.421 8.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.180 4.180 3 Si 0.774 3.226 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.556 4.556 8 H 0.066 0.934 9 C 0.106 3.894 10 H 0.022 0.978 11 C -0.050 4.050 12 N -0.373 5.373 13 C -0.193 4.193 14 C -0.102 4.102 15 N -0.187 5.187 16 H 0.292 0.708 17 N -0.150 5.150 18 C -0.070 4.070 19 C -0.118 4.118 20 C -0.194 4.194 21 C -0.185 4.185 22 H 0.069 0.931 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.197 0.803 28 H 0.125 0.875 29 H 0.110 0.890 30 H 0.134 0.866 31 H 0.134 0.866 32 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.423 -9.359 0.697 9.990 hybrid contribution -0.517 2.425 -0.721 2.582 sum 2.905 -6.934 -0.024 7.518 Atomic orbital electron populations 1.69988 1.06861 1.26945 1.51608 1.25624 0.95590 1.01807 0.95007 0.85718 0.78688 0.80036 0.78164 1.20062 1.21148 1.19924 1.21475 0.92755 0.91456 1.49940 0.93445 1.16929 0.90597 0.88636 0.93204 0.97837 1.21693 0.95683 0.89753 0.97832 1.58880 1.29793 1.41988 1.06599 1.20272 1.02566 1.00477 0.95966 1.22312 0.95391 0.91214 1.01241 1.45909 1.31400 1.22505 1.18923 0.70785 1.76883 1.14782 1.23878 0.99492 1.21439 0.95352 0.93722 0.96490 1.20243 1.02453 0.95635 0.93515 1.23009 0.98979 1.00919 0.96465 1.22953 0.96244 0.96960 1.02296 0.93124 0.94672 0.94674 0.85728 0.85848 0.80330 0.87514 0.88996 0.86616 0.86553 0.89608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.70 11.29 21.45 0.24 -50.45 16 2 C 0.02 0.98 5.29 84.65 0.45 1.43 16 3 Si 0.95 42.76 29.54 68.60 2.03 44.79 16 4 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 5 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 6 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 7 C -0.52 -27.76 8.40 25.60 0.21 -27.54 16 8 H 0.05 2.56 7.71 -2.91 -0.02 2.54 16 9 C 0.13 6.22 2.24 -12.29 -0.03 6.20 16 10 H 0.00 0.19 7.00 -2.38 -0.02 0.18 16 11 C 0.08 3.76 5.95 86.30 0.51 4.27 16 12 N -0.84 -33.02 9.34 -186.72 -1.74 -34.76 16 13 C -0.18 -8.02 4.52 -20.14 -0.09 -8.11 16 14 C 0.04 1.70 11.28 83.54 0.94 2.64 16 15 N -0.48 -16.06 7.36 -57.59 -0.42 -16.48 16 16 H 0.45 11.07 8.96 -213.33 -1.91 9.16 16 17 N -0.33 -12.56 12.28 -47.38 -0.58 -13.14 16 18 C 0.09 3.91 6.75 43.10 0.29 4.20 16 19 C -0.10 -3.55 5.86 -11.54 -0.07 -3.62 16 20 C -0.16 -4.47 10.14 30.62 0.31 -4.16 16 21 C -0.15 -4.24 10.24 30.62 0.31 -3.93 16 22 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 23 H 0.03 1.61 7.86 -2.39 -0.02 1.59 16 24 H 0.04 1.83 5.95 -2.39 -0.01 1.82 16 25 H 0.33 12.84 8.99 -89.69 -0.81 12.03 16 26 H 0.33 11.22 9.08 -89.70 -0.81 10.41 16 27 H 0.18 6.16 8.06 -2.91 -0.02 6.14 16 28 H 0.11 4.14 7.40 -2.39 -0.02 4.12 16 29 H 0.09 2.72 7.90 -2.38 -0.02 2.70 16 30 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 31 H 0.12 2.81 8.14 -2.39 -0.02 2.80 16 32 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 Total: -1.00 -61.81 273.44 -0.01 -61.82 By element: Atomic # 1 Polarization: 39.22 SS G_CDS: -2.37 Total: 36.84 kcal Atomic # 6 Polarization: -31.46 SS G_CDS: 2.85 Total: -28.62 kcal Atomic # 7 Polarization: -112.32 SS G_CDS: -2.51 Total: -114.83 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -61.81 -0.01 -61.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260365871.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.881 kcal (2) G-P(sol) polarization free energy of solvation -61.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds