Wall clock time and date at job start Mon Mar 30 2020 03:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86809 * 119.99588 * 2 1 4 4 H 1.48502 * 109.46850 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46939 * 299.99708 * 3 2 1 6 6 H 1.48499 * 109.46903 * 59.99909 * 3 2 1 7 7 C 1.37871 * 120.00493 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00566 * 185.16658 * 7 2 1 9 9 C 1.50705 * 119.99821 * 5.16145 * 7 2 1 10 10 N 1.46502 * 109.52186 * 303.24529 * 9 7 2 11 11 C 1.36892 * 126.39105 * 112.63189 * 10 9 7 12 12 C 1.34667 * 106.81361 * 179.97438 * 11 10 9 13 13 N 1.34135 * 108.02156 * 0.02562 * 12 11 10 14 14 C 1.30499 * 109.25534 * 359.97438 * 13 12 11 15 15 C 1.53118 * 109.57319 * 63.40489 * 9 7 2 16 16 C 1.53035 * 109.27511 * 177.58886 * 15 9 7 17 17 N 1.46851 * 109.52793 * 300.82241 * 16 15 9 18 18 C 1.46845 * 111.19424 * 61.74025 * 17 16 15 19 19 C 1.53039 * 109.52747 * 298.25857 * 18 17 16 20 20 H 0.96998 * 120.00171 * 0.02562 * 1 2 3 21 21 H 1.07992 * 126.59237 * 359.97438 * 11 10 9 22 22 H 1.07998 * 125.99008 * 180.02562 * 12 11 10 23 23 H 1.08003 * 125.64827 * 179.73276 * 14 13 12 24 24 H 1.08995 * 109.50450 * 297.53548 * 15 9 7 25 25 H 1.09000 * 109.49733 * 57.65387 * 15 9 7 26 26 H 1.09007 * 109.46180 * 180.80833 * 16 15 9 27 27 H 1.09003 * 109.45631 * 60.83758 * 16 15 9 28 28 H 1.00892 * 111.00073 * 185.83866 * 17 16 15 29 29 H 1.09003 * 109.46184 * 178.24459 * 18 17 16 30 30 H 1.09005 * 109.45174 * 58.27575 * 18 17 16 31 31 H 1.08997 * 109.50253 * 299.24020 * 19 18 17 32 32 H 1.08999 * 109.53725 * 179.14082 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0813 -1.1959 0.0837 9 6 1.2558 -2.4964 -0.1185 10 7 0.2683 -2.5928 0.9594 11 6 -1.0932 -2.5736 0.8177 12 6 -1.6151 -2.6873 2.0539 13 7 -0.6001 -2.7730 2.9266 14 6 0.5310 -2.7172 2.2781 15 6 0.5431 -2.5576 -1.4724 16 6 -0.1652 -3.9071 -1.6099 17 7 0.8197 -4.9914 -1.5056 18 6 1.4832 -4.9816 -0.1956 19 6 2.2409 -3.6641 -0.0158 20 1 -0.4850 0.8400 -0.0004 21 1 -1.6429 -2.4845 -0.1076 22 1 -2.6666 -2.7063 2.2995 23 1 1.5143 -2.7587 2.7228 24 1 -0.1902 -1.7536 -1.5343 25 1 1.2739 -2.4469 -2.2735 26 1 -0.6617 -3.9596 -2.5789 27 1 -0.9054 -4.0112 -0.8165 28 1 0.3922 -5.8869 -1.6877 29 1 2.1840 -5.8144 -0.1373 30 1 0.7351 -5.0807 0.5910 31 1 2.9983 -3.5708 -0.7941 32 1 2.7209 -3.6503 0.9627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260403187.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:06:20 Heat of formation + Delta-G solvation = 64.868675 kcal Electronic energy + Delta-G solvation = -16133.439768 eV Core-core repulsion = 13708.910665 eV Total energy + Delta-G solvation = -2424.529103 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.91318 -37.65629 -33.87953 -31.62713 -30.48887 -29.10982 -27.86136 -25.68878 -22.38585 -22.35423 -20.24834 -19.60145 -18.71857 -17.03827 -16.26496 -14.90673 -14.83717 -13.96878 -13.93392 -13.22328 -13.10471 -12.57048 -12.36024 -12.23545 -12.22130 -11.67424 -11.31862 -11.08548 -10.86137 -10.50411 -10.42203 -10.38908 -9.55513 -9.33283 -8.88619 -8.65416 -8.21231 -7.80781 -7.10550 -6.26969 -4.45410 3.14756 3.25279 3.27252 3.59184 4.20332 4.36961 4.42342 4.72097 5.12112 5.55242 5.61994 5.84217 5.87797 5.97735 6.04988 6.21125 6.26353 6.31699 6.43462 6.53827 6.72253 6.81676 6.95363 7.05369 7.24543 7.52812 7.58887 7.78083 7.83998 7.95000 8.13520 8.49902 8.81912 9.26297 9.41080 10.71789 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026114 B = 0.014428 C = 0.011613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.954777 B = 1940.207679 C = 2410.498072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.080 3.920 3 Si 0.898 3.102 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.540 4.540 8 H 0.069 0.931 9 C 0.277 3.723 10 N -0.387 5.387 11 C -0.001 4.001 12 C -0.084 4.084 13 N -0.524 5.524 14 C 0.166 3.834 15 C -0.106 4.106 16 C 0.040 3.960 17 N -0.688 5.688 18 C 0.057 3.943 19 C -0.112 4.112 20 H 0.266 0.734 21 H 0.150 0.850 22 H 0.143 0.857 23 H 0.178 0.822 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.329 0.671 29 H 0.062 0.938 30 H 0.027 0.973 31 H 0.075 0.925 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.445 -5.913 -2.915 6.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.128 4.128 3 Si 0.725 3.275 4 H -0.195 1.195 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.578 4.578 8 H 0.087 0.913 9 C 0.197 3.803 10 N -0.064 5.064 11 C -0.140 4.140 12 C -0.232 4.232 13 N -0.244 5.244 14 C -0.117 4.117 15 C -0.145 4.145 16 C -0.088 4.088 17 N -0.318 5.318 18 C -0.072 4.072 19 C -0.150 4.150 20 H 0.076 0.924 21 H 0.167 0.833 22 H 0.160 0.840 23 H 0.195 0.805 24 H 0.109 0.891 25 H 0.084 0.916 26 H 0.078 0.922 27 H 0.057 0.943 28 H 0.146 0.854 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.094 0.906 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.852 -5.494 -2.516 6.102 hybrid contribution -0.282 0.911 -0.303 1.001 sum 0.570 -4.583 -2.818 5.410 Atomic orbital electron populations 1.69950 1.05869 1.27277 1.45907 1.25046 0.94917 0.99574 0.93241 0.86441 0.80231 0.83078 0.77776 1.19489 1.20709 1.20862 1.21200 0.93567 0.89150 1.53928 0.91285 1.18574 0.84785 0.93705 0.83284 1.46215 1.06002 1.46372 1.07800 1.22111 0.84663 1.08075 0.99173 1.21783 0.97597 1.13967 0.89894 1.70036 0.98006 1.22411 1.33941 1.24108 0.98140 1.07853 0.81577 1.21772 1.00616 0.94711 0.97397 1.22371 0.93581 0.92989 0.99907 1.60353 1.33672 1.06425 1.31372 1.21931 0.97304 0.98490 0.89498 1.21892 0.98433 0.93222 1.01493 0.92431 0.83287 0.83975 0.80502 0.89106 0.91568 0.92164 0.94348 0.85442 0.91962 0.95448 0.90616 0.92152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.25 9.95 55.43 0.55 -21.70 16 2 C 0.08 2.02 5.22 -17.82 -0.09 1.93 16 3 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.54 -13.33 8.00 -34.44 -0.28 -13.61 16 8 H 0.07 1.70 7.75 -52.49 -0.41 1.30 16 9 C 0.28 6.10 0.41 -132.84 -0.05 6.04 16 10 N -0.39 -8.73 1.22 -105.69 -0.13 -8.86 16 11 C 0.00 -0.02 7.38 -16.56 -0.12 -0.14 16 12 C -0.08 -1.89 11.87 -17.81 -0.21 -2.10 16 13 N -0.52 -12.54 11.25 -14.67 -0.17 -12.71 16 14 C 0.17 3.84 11.63 -90.38 -1.05 2.79 16 15 C -0.11 -2.22 4.17 -26.65 -0.11 -2.33 16 16 C 0.04 0.72 6.10 -3.83 -0.02 0.69 16 17 N -0.69 -11.32 6.85 -113.81 -0.78 -12.10 16 18 C 0.06 0.98 6.40 -3.83 -0.02 0.95 16 19 C -0.11 -2.15 4.68 -26.65 -0.12 -2.27 16 20 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 21 H 0.15 3.19 6.25 -52.49 -0.33 2.86 16 22 H 0.14 2.84 8.06 -52.49 -0.42 2.41 16 23 H 0.18 3.74 7.84 -52.48 -0.41 3.32 16 24 H 0.09 2.10 5.97 -51.93 -0.31 1.79 16 25 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 26 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.04 0.72 5.13 -51.93 -0.27 0.45 16 28 H 0.33 4.60 8.90 -39.30 -0.35 4.25 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.03 0.51 7.69 -51.93 -0.40 0.12 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.06 1.13 7.59 -51.93 -0.39 0.73 16 LS Contribution 252.04 15.07 3.80 3.80 Total: -1.00 -27.40 252.04 -7.95 -35.35 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -4.11 Total: 9.15 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -2.09 Total: -8.05 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.52 Total: -55.36 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -27.40 -7.95 -35.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260403187.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.215 kcal (2) G-P(sol) polarization free energy of solvation -27.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds