Wall clock time and date at job start Mon Mar 30 2020 03:26:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38683 * 120.40635 * 2 1 4 4 C 1.38632 * 118.55859 * 180.02562 * 3 2 1 5 5 C 1.50703 * 120.40250 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47005 * 275.00147 * 5 4 3 7 7 C 1.52996 * 109.47198 * 35.00248 * 5 4 3 8 8 N 1.32252 * 119.19604 * 359.73559 * 4 3 2 9 9 C 1.32519 * 120.73945 * 0.53449 * 8 4 3 10 10 N 1.38438 * 119.21408 * 179.72115 * 9 8 4 11 11 C 1.36984 * 120.00164 * 179.73447 * 10 9 8 12 12 H 1.08002 * 120.00147 * 0.02562 * 11 10 9 13 13 C 1.38840 * 120.00039 * 179.72385 * 11 10 9 14 14 N 1.31541 * 119.99593 * 180.27511 * 13 11 10 15 15 Si 1.86800 * 119.99834 * 0.27778 * 13 11 10 16 16 H 1.48498 * 109.47109 * 90.00084 * 15 13 11 17 17 H 1.48507 * 109.46754 * 209.99824 * 15 13 11 18 18 H 1.48498 * 109.47278 * 329.99655 * 15 13 11 19 19 N 1.32224 * 120.40058 * 180.02562 * 2 1 3 20 20 H 1.09004 * 109.47434 * 269.98165 * 1 2 3 21 21 H 1.09000 * 109.46949 * 29.97695 * 1 2 3 22 22 H 1.09000 * 109.47003 * 149.97918 * 1 2 3 23 23 H 1.07998 * 120.72061 * 0.02562 * 3 2 1 24 24 H 1.09003 * 109.47196 * 155.00472 * 5 4 3 25 25 H 1.09007 * 109.46763 * 179.97438 * 6 5 4 26 26 H 1.08996 * 109.47629 * 299.99825 * 6 5 4 27 27 H 1.09005 * 109.47037 * 60.00656 * 6 5 4 28 28 H 1.09007 * 109.47041 * 59.99641 * 7 5 4 29 29 H 1.08998 * 109.47314 * 179.97438 * 7 5 4 30 30 H 1.09003 * 109.47231 * 300.00203 * 7 5 4 31 31 H 0.97000 * 120.00298 * 359.73283 * 10 9 8 32 32 H 0.97005 * 119.99697 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2089 1.1961 0.0000 4 6 3.5945 1.1514 -0.0005 5 6 4.3986 2.4259 -0.0011 6 6 4.5638 2.9240 -1.4384 7 6 3.6719 3.4879 0.8263 8 7 4.2020 -0.0233 0.0043 9 6 3.5016 -1.1482 -0.0010 10 7 4.1701 -2.3605 -0.0016 11 6 3.4620 -3.5332 -0.0016 12 1 2.3822 -3.5120 -0.0015 13 6 4.1325 -4.7489 -0.0079 14 7 3.4525 -5.8749 -0.0134 15 14 6.0002 -4.7855 -0.0087 16 1 6.4955 -4.8023 1.3911 17 1 6.4710 -6.0040 -0.7151 18 1 6.5186 -3.5795 -0.7029 19 7 2.1761 -1.1404 -0.0005 20 1 -0.3634 -0.0003 1.0277 21 1 -0.3633 0.8902 -0.5135 22 1 -0.3633 -0.8898 -0.5142 23 1 1.6874 2.1418 0.0004 24 1 5.3805 2.2363 0.4327 25 1 5.1451 3.8461 -1.4387 26 1 5.0817 2.1675 -2.0279 27 1 3.5820 3.1137 -1.8722 28 1 3.5541 3.1330 1.8502 29 1 4.2537 4.4096 0.8263 30 1 2.6901 3.6776 0.3924 31 1 5.1399 -2.3796 -0.0021 32 1 3.9209 -6.7243 -0.0175 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260533150.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:18 Heat of formation + Delta-G solvation = 40.039913 kcal Electronic energy + Delta-G solvation = -14733.219775 eV Core-core repulsion = 12307.614016 eV Total energy + Delta-G solvation = -2425.605759 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.00271 -36.24682 -35.00866 -32.98462 -31.78625 -29.77865 -27.64251 -26.90951 -24.92067 -23.17401 -21.51307 -19.65284 -18.35547 -16.50209 -16.22358 -15.02474 -14.57535 -14.42588 -13.91407 -13.86010 -13.09954 -13.01960 -12.57991 -12.53732 -12.20172 -12.02738 -11.85984 -11.41023 -11.18455 -11.05618 -10.75457 -10.66480 -10.25029 -10.14704 -9.69420 -9.37448 -8.88329 -7.98084 -7.44468 -6.47607 -3.80246 2.15172 2.19546 3.05406 3.06526 3.10876 4.00060 4.20208 4.63392 4.81746 5.04194 5.18321 5.30090 5.41345 5.53118 5.72225 5.75231 5.90610 5.99487 6.02280 6.04047 6.08117 6.14816 6.27574 6.39941 6.46893 6.50994 6.74763 7.27393 7.48495 7.94017 8.33927 8.52703 8.87539 9.23485 9.69171 10.63208 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.032149 B = 0.008132 C = 0.006748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.722318 B = 3442.263275 C = 4148.552448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.217 3.783 3 C -0.353 4.353 4 C 0.227 3.773 5 C -0.045 4.045 6 C -0.136 4.136 7 C -0.140 4.140 8 N -0.604 5.604 9 C 0.514 3.486 10 N -0.536 5.536 11 C -0.284 4.284 12 H 0.132 0.868 13 C 0.041 3.959 14 N -0.868 5.868 15 Si 0.878 3.122 16 H -0.268 1.268 17 H -0.273 1.273 18 H -0.266 1.266 19 N -0.564 5.564 20 H 0.074 0.926 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.121 0.879 24 H 0.083 0.917 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.061 0.939 31 H 0.389 0.611 32 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.005 14.372 -0.235 14.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.064 3.936 3 C -0.383 4.383 4 C 0.076 3.924 5 C -0.064 4.064 6 C -0.194 4.194 7 C -0.198 4.198 8 N -0.331 5.331 9 C 0.160 3.840 10 N -0.150 5.150 11 C -0.415 4.415 12 H 0.149 0.851 13 C -0.165 4.165 14 N -0.505 5.505 15 Si 0.703 3.297 16 H -0.193 1.193 17 H -0.198 1.198 18 H -0.191 1.191 19 N -0.290 5.290 20 H 0.092 0.908 21 H 0.088 0.912 22 H 0.093 0.907 23 H 0.139 0.861 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.080 0.920 31 H 0.225 0.775 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.502 12.806 -0.231 12.818 hybrid contribution 0.929 0.459 0.001 1.036 sum 1.431 13.265 -0.230 13.344 Atomic orbital electron populations 1.20639 0.89694 1.02750 1.02540 1.21177 0.96097 0.88069 0.88263 1.21540 0.95093 0.98822 1.22881 1.20837 0.91051 0.91853 0.88704 1.19976 0.98788 0.90741 0.96886 1.21739 1.01845 1.00586 0.95272 1.21839 1.00546 0.97535 0.99894 1.67481 1.41026 0.97652 1.26914 1.18841 0.85256 0.85463 0.94470 1.40740 1.07079 1.01984 1.65217 1.19653 0.95125 0.80460 1.46234 0.85092 1.25034 0.98914 0.94933 0.97587 1.69663 1.36036 0.97471 1.47336 0.86648 0.84888 0.78801 0.79334 1.19292 1.19768 1.19088 1.67735 1.07765 1.29400 1.24127 0.90762 0.91242 0.90665 0.86059 0.89843 0.92429 0.92465 0.92501 0.92576 0.92547 0.92048 0.77465 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.50 10.22 36.00 0.37 -1.13 16 2 C 0.22 4.33 6.82 -82.26 -0.56 3.77 16 3 C -0.35 -6.35 8.94 -39.27 -0.35 -6.70 16 4 C 0.23 4.31 5.82 -82.26 -0.48 3.83 16 5 C -0.04 -0.64 3.27 -91.77 -0.30 -0.94 16 6 C -0.14 -1.71 9.18 37.16 0.34 -1.37 16 7 C -0.14 -1.61 8.64 37.16 0.32 -1.29 16 8 N -0.60 -13.68 10.40 -10.12 -0.11 -13.78 16 9 C 0.51 12.86 8.38 -322.65 -2.70 10.15 16 10 N -0.54 -13.82 5.23 -12.78 -0.07 -13.89 16 11 C -0.28 -7.98 10.17 -15.03 -0.15 -8.13 16 12 H 0.13 4.02 7.28 -52.49 -0.38 3.63 16 13 C 0.04 1.10 5.50 -17.45 -0.10 1.01 16 14 N -0.87 -24.78 13.96 55.49 0.77 -24.00 16 15 Si 0.88 19.89 27.74 -169.99 -4.72 15.18 16 16 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 18 H -0.27 -5.79 6.51 56.52 0.37 -5.43 16 19 N -0.56 -13.74 9.04 -10.12 -0.09 -13.84 16 20 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 21 H 0.07 0.84 8.09 -51.93 -0.42 0.42 16 22 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 23 H 0.12 1.78 6.43 -52.49 -0.34 1.45 16 24 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.67 8.14 -51.92 -0.42 0.25 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.66 6.57 -51.93 -0.34 0.32 16 31 H 0.39 9.45 5.87 -40.82 -0.24 9.21 16 32 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 271.72 15.07 4.09 4.09 Total: -1.00 -30.41 271.72 -7.99 -38.41 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -4.27 Total: 8.63 kcal Atomic # 6 Polarization: 2.82 SS G_CDS: -3.61 Total: -0.80 kcal Atomic # 7 Polarization: -66.02 SS G_CDS: 0.51 Total: -65.50 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -4.72 Total: 15.18 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -30.41 -7.99 -38.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260533150.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.446 kcal (2) G-P(sol) polarization free energy of solvation -30.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds