Wall clock time and date at job start Mon Mar 30 2020 02:38:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.35897 * 117.00481 * 180.02562 * 3 2 1 5 5 C 1.38814 * 120.01340 * 359.97438 * 4 3 2 6 6 C 1.38177 * 120.09471 * 179.97438 * 5 4 3 7 7 C 1.38149 * 120.12443 * 0.02562 * 6 5 4 8 8 C 1.50703 * 119.98124 * 180.02562 * 7 6 5 9 9 C 1.50698 * 109.47285 * 264.99955 * 8 7 6 10 10 H 1.08003 * 119.99392 * 0.02562 * 9 8 7 11 11 C 1.37875 * 120.00399 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99627 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00218 * 180.02562 * 11 9 8 14 14 H 1.48492 * 109.47255 * 59.99584 * 13 11 9 15 15 H 1.48497 * 109.47284 * 179.97438 * 13 11 9 16 16 H 1.48505 * 109.46768 * 299.99711 * 13 11 9 17 17 C 1.38937 * 120.03940 * 359.97438 * 7 6 5 18 18 N 1.39661 * 120.04831 * 180.02562 * 17 7 6 19 19 C 1.38566 * 120.02323 * 179.72216 * 4 3 2 20 20 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 22 22 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 23 23 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 24 24 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 25 25 H 1.08005 * 119.95669 * 359.97438 * 5 4 3 26 26 H 1.08000 * 119.93689 * 180.02562 * 6 5 4 27 27 H 1.09003 * 109.47308 * 25.00239 * 8 7 6 28 28 H 1.09009 * 109.47233 * 144.99893 * 8 7 6 29 29 H 0.97003 * 120.00018 * 180.02562 * 12 11 9 30 30 H 0.97007 * 120.00063 * 0.02562 * 18 17 7 31 31 H 0.97003 * 120.00239 * 179.97438 * 18 17 7 32 32 H 1.08004 * 120.06345 * 359.97438 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1995 0.4247 -0.0005 6 6 5.5696 0.6039 -0.0016 7 6 6.1022 1.8786 -0.0022 8 6 7.5969 2.0703 -0.0039 9 6 8.0812 2.2570 1.4109 10 1 7.3769 2.2382 2.2295 11 6 9.4231 2.4517 1.6603 12 7 10.2807 2.4740 0.6634 13 14 10.0234 2.6823 3.4141 14 1 9.6799 1.4813 4.2168 15 1 11.4963 2.8713 3.4124 16 1 9.3712 3.8774 4.0073 17 6 5.2605 2.9840 -0.0022 18 7 5.7987 4.2728 -0.0033 19 6 3.8837 2.8056 -0.0064 20 1 -0.3635 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.8933 -0.5139 -0.8900 24 1 1.8933 -0.5138 0.8900 25 1 3.7862 -0.5731 0.0003 26 1 6.2254 -0.2542 -0.0020 27 1 8.0753 1.1927 -0.4389 28 1 7.8496 2.9516 -0.5937 29 1 11.2249 2.6106 0.8389 30 1 6.7608 4.3966 -0.0045 31 1 5.2104 5.0441 -0.0037 32 1 3.2270 3.6631 -0.0109 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260552142.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:38:31 Heat of formation + Delta-G solvation = -49.605662 kcal Electronic energy + Delta-G solvation = -14509.023205 eV Core-core repulsion = 12047.237371 eV Total energy + Delta-G solvation = -2461.785834 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.98853 -39.01156 -35.24876 -34.87083 -33.05919 -31.74666 -29.80001 -28.10206 -25.07929 -24.44112 -22.85738 -21.41843 -19.11555 -18.43008 -17.88924 -16.90989 -16.74936 -16.37264 -15.90477 -15.42058 -14.61310 -14.34683 -14.23608 -14.07029 -13.53887 -13.26223 -13.22936 -12.93407 -12.75323 -12.43184 -12.37720 -11.77341 -11.63092 -11.51549 -11.35504 -10.93648 -10.55574 -9.08622 -8.32914 -8.01531 -6.26881 0.69398 0.84353 1.41220 1.42573 1.51004 2.33149 2.42376 3.09191 3.15086 3.31353 4.04640 4.13595 4.23890 4.32499 4.46779 4.50717 4.57810 4.76947 4.91376 5.00792 5.12242 5.25626 5.29194 5.40767 5.52457 5.59735 5.79704 5.86911 6.05256 6.26381 6.61133 6.75757 6.84959 7.16984 7.41434 8.93123 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.045053 B = 0.006156 C = 0.005961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.338780 B = 4547.129129 C = 4695.724028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 O -0.331 6.331 4 C 0.151 3.849 5 C -0.264 4.264 6 C -0.054 4.054 7 C -0.182 4.182 8 C 0.074 3.926 9 C -0.518 4.518 10 H 0.047 0.953 11 C 0.009 3.991 12 N -0.928 5.928 13 Si 0.958 3.042 14 H -0.273 1.273 15 H -0.282 1.282 16 H -0.269 1.269 17 C 0.246 3.754 18 N -0.862 5.862 19 C -0.245 4.245 20 H 0.100 0.900 21 H 0.062 0.938 22 H 0.064 0.936 23 H 0.067 0.933 24 H 0.065 0.935 25 H 0.141 0.859 26 H 0.117 0.883 27 H -0.003 1.003 28 H 0.007 0.993 29 H 0.264 0.736 30 H 0.403 0.597 31 H 0.403 0.597 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.788 -2.434 -1.131 16.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 O -0.246 6.246 4 C 0.105 3.895 5 C -0.285 4.285 6 C -0.073 4.073 7 C -0.186 4.186 8 C 0.037 3.963 9 C -0.556 4.556 10 H 0.065 0.935 11 C -0.189 4.189 12 N -0.568 5.568 13 Si 0.783 3.217 14 H -0.199 1.199 15 H -0.207 1.207 16 H -0.194 1.194 17 C 0.139 3.861 18 N -0.402 5.402 19 C -0.269 4.269 20 H 0.119 0.881 21 H 0.081 0.919 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.083 0.917 25 H 0.159 0.841 26 H 0.135 0.865 27 H 0.015 0.985 28 H 0.025 0.975 29 H 0.073 0.927 30 H 0.233 0.767 31 H 0.233 0.767 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -15.776 -2.288 -1.172 15.984 hybrid contribution 1.092 0.237 0.740 1.341 sum -14.683 -2.050 -0.432 14.832 Atomic orbital electron populations 1.21792 0.91124 1.04149 1.03182 1.23033 0.96945 0.81053 1.02036 1.85978 1.18626 1.31089 1.88858 1.18551 0.82237 0.93489 0.95245 1.21022 0.93249 0.98373 1.15865 1.20686 0.94667 0.96012 0.95916 1.19914 0.96561 0.92803 1.09320 1.17793 0.87306 0.95452 0.95746 1.21325 0.92394 1.48841 0.93061 0.93461 1.25808 0.97018 0.95102 1.00991 1.70064 1.02971 1.50948 1.32862 0.85613 0.77054 0.78882 0.80149 1.19851 1.20731 1.19448 1.17366 0.91003 0.86091 0.91689 1.42513 1.10429 1.03655 1.83568 1.19709 0.92469 0.96001 1.18718 0.88119 0.91878 0.91706 0.91429 0.91721 0.84118 0.86451 0.98481 0.97508 0.92726 0.76674 0.76697 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.04 0.94 5.46 71.98 0.39 1.34 16 3 O -0.33 -9.91 10.13 -92.39 -0.94 -10.84 16 4 C 0.15 5.22 6.68 22.49 0.15 5.37 16 5 C -0.26 -9.18 9.04 22.39 0.20 -8.97 16 6 C -0.05 -2.20 9.67 22.23 0.21 -1.98 16 7 C -0.18 -8.26 5.09 -19.72 -0.10 -8.36 16 8 C 0.07 3.93 4.53 29.10 0.13 4.06 16 9 C -0.52 -29.19 9.09 25.60 0.23 -28.96 16 10 H 0.05 2.69 7.74 -2.91 -0.02 2.66 16 11 C 0.01 0.50 5.46 84.65 0.46 0.97 16 12 N -0.93 -55.01 13.29 21.45 0.28 -54.72 16 13 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 14 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 17 C 0.25 9.90 6.73 38.20 0.26 10.16 16 18 N -0.86 -30.92 8.99 -51.41 -0.46 -31.38 16 19 C -0.25 -8.83 9.83 22.49 0.22 -8.61 16 20 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 21 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 23 H 0.07 1.34 7.66 -2.39 -0.02 1.32 16 24 H 0.06 1.32 7.66 -2.39 -0.02 1.30 16 25 H 0.14 3.96 6.29 -2.91 -0.02 3.94 16 26 H 0.12 4.65 8.06 -2.91 -0.02 4.63 16 27 H 0.00 -0.18 8.05 -2.39 -0.02 -0.20 16 28 H 0.01 0.37 6.81 -2.38 -0.02 0.35 16 29 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 30 H 0.40 15.98 6.93 -92.70 -0.64 15.33 16 31 H 0.40 11.31 8.84 -92.71 -0.82 10.49 16 32 H 0.14 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -64.60 273.96 3.49 -61.11 By element: Atomic # 1 Polarization: 26.45 SS G_CDS: -0.33 Total: 26.12 kcal Atomic # 6 Polarization: -39.38 SS G_CDS: 2.91 Total: -36.47 kcal Atomic # 7 Polarization: -85.93 SS G_CDS: -0.18 Total: -86.10 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: -0.94 Total: -10.84 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -64.60 3.49 -61.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260552142.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.506 kcal (2) G-P(sol) polarization free energy of solvation -64.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds