Wall clock time and date at job start Mon Mar 30 2020 03:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99417 * 2 1 4 4 H 1.48497 * 109.47042 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47389 * 300.00181 * 3 2 1 6 6 H 1.48498 * 109.47461 * 59.99848 * 3 2 1 7 7 C 1.37871 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99705 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00031 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46858 * 180.02562 * 9 7 2 11 11 H 1.08997 * 110.53944 * 307.61285 * 10 9 7 12 12 C 1.54961 * 110.53009 * 70.24369 * 10 9 7 13 13 C 1.54895 * 102.77671 * 156.56398 * 12 10 9 14 14 C 1.54268 * 104.19476 * 322.08719 * 13 12 10 15 15 H 1.08999 * 110.03048 * 264.32059 * 14 13 12 16 16 N 1.46498 * 110.07149 * 142.91563 * 14 13 12 17 17 C 1.34428 * 126.82585 * 327.81002 * 16 14 13 18 18 N 1.30831 * 108.08134 * 179.97438 * 17 16 14 19 19 C 1.33242 * 109.82761 * 359.97438 * 18 17 16 20 20 N 1.30715 * 108.94444 * 359.75371 * 19 18 17 21 21 C 1.53869 * 106.60115 * 23.60777 * 14 13 12 22 22 H 0.97001 * 120.00830 * 0.02562 * 1 2 3 23 23 H 1.09002 * 109.46940 * 60.00352 * 9 7 2 24 24 H 1.08997 * 109.47212 * 299.99838 * 9 7 2 25 25 H 1.09001 * 110.71970 * 38.25675 * 12 10 9 26 26 H 1.08998 * 110.76825 * 274.90043 * 12 10 9 27 27 H 1.08997 * 110.48689 * 203.40743 * 13 12 10 28 28 H 1.09001 * 110.48394 * 80.76190 * 13 12 10 29 29 H 1.08009 * 125.95879 * 359.92269 * 17 16 14 30 30 H 1.07996 * 125.52871 * 180.02562 * 19 18 17 31 31 H 1.09002 * 110.03268 * 119.28653 * 21 14 13 32 32 H 1.08995 * 110.03391 * 240.66959 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3466 -0.0006 5 1 1.8901 2.3966 -1.2125 6 1 1.8902 2.3965 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2455 -3.6619 -0.0005 11 1 2.9675 -3.5477 -0.8091 12 6 2.9715 -3.7562 1.3652 13 6 3.4209 -5.2377 1.4128 14 6 2.2489 -6.0093 0.7719 15 1 1.5812 -6.3854 1.5471 16 7 2.7596 -7.1217 -0.0330 17 6 3.9179 -7.1581 -0.7143 18 7 4.0073 -8.3239 -1.3013 19 6 2.9302 -9.0558 -1.0191 20 7 2.1395 -8.3646 -0.2408 21 6 1.5022 -5.0079 -0.1265 22 1 -0.4851 0.8400 -0.0004 23 1 0.6242 -2.5567 -0.8903 24 1 0.6249 -2.5571 0.8897 25 1 2.2855 -3.5343 2.1827 26 1 3.8338 -3.0899 1.3914 27 1 3.5703 -5.5582 2.4438 28 1 4.3329 -5.3785 0.8326 29 1 4.6472 -6.3632 -0.7683 30 1 2.7431 -10.0591 -1.3722 31 1 1.5206 -5.3491 -1.1616 32 1 0.4720 -4.8985 0.2121 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260568329.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:44 Heat of formation + Delta-G solvation = 69.805470 kcal Electronic energy + Delta-G solvation = -14712.549838 eV Core-core repulsion = 12288.234810 eV Total energy + Delta-G solvation = -2424.315028 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.01566 -38.19707 -33.72448 -32.32310 -31.15105 -29.68597 -28.20660 -25.88244 -22.88809 -22.44822 -21.79279 -19.93784 -19.15784 -17.21739 -16.43934 -15.62764 -15.03696 -14.75663 -14.34737 -14.15200 -13.73973 -13.10279 -12.32883 -12.09814 -11.92120 -11.75171 -11.39925 -11.08801 -10.88607 -10.59714 -10.52580 -10.32147 -9.95088 -9.77398 -9.72284 -9.66604 -9.24093 -9.00853 -8.40767 -6.05286 -4.07776 1.73211 2.40485 3.03015 3.27092 3.35378 3.38167 4.36953 4.39580 4.45711 4.78365 4.91551 5.02067 5.25341 5.30896 5.49122 5.70373 5.71722 5.80210 5.88537 6.09859 6.22222 6.31169 6.48085 6.51038 6.68439 6.82914 6.90859 7.02112 7.59533 7.71978 7.93283 8.15945 8.35404 8.98944 9.56857 11.05972 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.060370 B = 0.005632 C = 0.005530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 463.692677 B = 4970.132046 C = 5062.460878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.029 3.971 10 C -0.082 4.082 11 H 0.064 0.936 12 C -0.104 4.104 13 C -0.135 4.135 14 C 0.149 3.851 15 H 0.103 0.897 16 N -0.361 5.361 17 C 0.254 3.746 18 N -0.555 5.555 19 C 0.187 3.813 20 N -0.325 5.325 21 C -0.130 4.130 22 H 0.260 0.740 23 H 0.016 0.984 24 H 0.019 0.981 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.216 0.784 30 H 0.213 0.787 31 H 0.063 0.937 32 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.171 -11.769 1.666 13.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.555 4.555 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.101 4.101 11 H 0.083 0.917 12 C -0.141 4.141 13 C -0.174 4.174 14 C 0.047 3.953 15 H 0.121 0.879 16 N -0.151 5.151 17 C -0.043 4.043 18 N -0.283 5.283 19 C -0.116 4.116 20 N -0.153 5.153 21 C -0.169 4.169 22 H 0.070 0.930 23 H 0.034 0.966 24 H 0.037 0.963 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.092 0.908 28 H 0.090 0.910 29 H 0.232 0.768 30 H 0.229 0.771 31 H 0.082 0.918 32 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.561 -11.973 1.792 13.322 hybrid contribution 0.413 1.147 -0.014 1.220 sum 5.974 -10.825 1.777 12.492 Atomic orbital electron populations 1.69965 1.06074 1.26542 1.50887 1.25018 0.94803 0.99257 0.95361 0.86575 0.80115 0.83948 0.77593 1.19734 1.21067 1.21050 1.21239 0.93004 0.90856 1.50438 0.92565 1.19145 0.93435 0.90900 0.97342 1.22109 0.98118 0.93759 0.96072 0.91735 1.22460 1.00722 0.92019 0.98940 1.22891 0.96415 0.97517 1.00563 1.22380 0.97202 0.83005 0.92687 0.87905 1.50854 1.15359 1.11920 1.36986 1.25907 0.90096 0.96988 0.91298 1.70546 1.26116 1.03940 1.27652 1.25931 0.88814 1.00894 0.95914 1.78010 1.22311 0.92496 1.22482 1.22750 1.00333 0.95105 0.98707 0.93032 0.96568 0.96282 0.90895 0.90739 0.90810 0.90969 0.76797 0.77064 0.91824 0.90195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.16 13.29 55.43 0.74 -25.42 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 4 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -13.72 8.77 -34.44 -0.30 -14.02 16 8 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 9 C 0.03 0.69 4.33 -27.88 -0.12 0.57 16 10 C -0.08 -1.49 2.80 -88.92 -0.25 -1.73 16 11 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 12 C -0.10 -1.60 6.00 -24.70 -0.15 -1.75 16 13 C -0.14 -1.65 6.38 -25.07 -0.16 -1.81 16 14 C 0.15 2.03 4.05 -66.82 -0.27 1.76 16 15 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 16 N -0.36 -5.14 3.47 -55.02 -0.19 -5.33 16 17 C 0.25 3.35 11.62 -90.66 -1.05 2.30 16 18 N -0.55 -7.94 11.19 -15.83 -0.18 -8.11 16 19 C 0.19 2.50 13.03 -91.81 -1.20 1.30 16 20 N -0.32 -4.92 12.70 29.29 0.37 -4.55 16 21 C -0.13 -2.08 6.16 -25.61 -0.16 -2.23 16 22 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 23 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 24 H 0.02 0.48 8.02 -51.93 -0.42 0.06 16 25 H 0.07 1.18 7.97 -51.93 -0.41 0.77 16 26 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 28 H 0.07 0.78 6.01 -51.93 -0.31 0.47 16 29 H 0.22 2.13 6.93 -52.48 -0.36 1.77 16 30 H 0.21 1.96 8.06 -52.49 -0.42 1.54 16 31 H 0.06 1.05 7.92 -51.93 -0.41 0.64 16 32 H 0.08 1.32 7.84 -51.93 -0.41 0.91 16 LS Contribution 269.59 15.07 4.06 4.06 Total: -1.00 -30.74 269.59 -8.37 -39.11 By element: Atomic # 1 Polarization: 2.86 SS G_CDS: -4.40 Total: -1.55 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: -3.75 Total: -14.15 kcal Atomic # 7 Polarization: -44.15 SS G_CDS: 0.74 Total: -43.41 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -30.74 -8.37 -39.11 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260568329.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.917 kcal (2) G-P(sol) polarization free energy of solvation -30.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds