Wall clock time and date at job start Mon Mar 30 2020 03:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48500 * 109.47353 * 89.99665 * 3 2 1 5 5 H 1.48501 * 109.47293 * 210.00115 * 3 2 1 6 6 H 1.48504 * 109.46680 * 329.99913 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99964 * 359.97438 * 7 2 1 9 9 C 1.50696 * 119.99717 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.46997 * 180.02562 * 9 7 2 11 11 H 1.09007 * 110.43340 * 305.69498 * 10 9 7 12 12 C 1.54889 * 110.49055 * 68.23627 * 10 9 7 13 13 C 1.55026 * 102.68477 * 156.51874 * 12 10 9 14 14 C 1.54267 * 104.28103 * 322.23710 * 13 12 10 15 15 H 1.08994 * 110.02927 * 142.80371 * 14 13 12 16 16 N 1.46499 * 110.06874 * 264.20740 * 14 13 12 17 17 C 1.34423 * 126.82520 * 32.19612 * 16 14 13 18 18 N 1.30835 * 108.07936 * 179.97438 * 17 16 14 19 19 C 1.33235 * 109.82909 * 359.97438 * 18 17 16 20 20 N 1.30712 * 108.94516 * 359.75299 * 19 18 17 21 21 C 1.53870 * 106.59825 * 23.51533 * 14 13 12 22 22 H 0.97001 * 119.99646 * 359.97438 * 1 2 3 23 23 H 1.09005 * 109.47076 * 299.99625 * 9 7 2 24 24 H 1.09002 * 109.47753 * 59.99866 * 9 7 2 25 25 H 1.09002 * 110.75731 * 274.93969 * 12 10 9 26 26 H 1.09000 * 110.75236 * 38.30655 * 12 10 9 27 27 H 1.09002 * 110.52512 * 203.48907 * 13 12 10 28 28 H 1.09004 * 110.48023 * 80.96140 * 13 12 10 29 29 H 1.08002 * 125.96381 * 359.92332 * 17 16 14 30 30 H 1.07997 * 125.53004 * 179.97438 * 19 18 17 31 31 H 1.09002 * 110.03424 * 240.71779 * 21 14 13 32 32 H 1.09007 * 110.02982 * 119.28730 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 1.4001 5 1 3.5468 1.4401 -0.7001 6 1 1.4467 2.6526 -0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 6 4.0215 -2.6366 -0.0014 11 1 3.5862 -3.1950 0.8274 12 6 3.6956 -3.3256 -1.3497 13 6 4.7545 -4.4558 -1.4192 14 6 6.0279 -3.8214 -0.8227 15 1 6.5712 -4.5593 -0.2325 16 7 6.8837 -3.3084 -1.8952 17 6 6.4822 -2.8015 -3.0737 18 7 7.5468 -2.4549 -3.7506 19 6 8.6414 -2.7234 -3.0399 20 7 8.2866 -3.2420 -1.8938 21 6 5.5618 -2.6648 0.0788 22 1 -0.4850 0.8401 0.0004 23 1 3.8752 -0.6797 -0.8895 24 1 3.8746 -0.6808 0.8905 25 1 2.6869 -3.7385 -1.3387 26 1 3.8201 -2.6295 -2.1792 27 1 4.9260 -4.7558 -2.4530 28 1 4.4388 -5.3114 -0.8221 29 1 5.4592 -2.6991 -3.4046 30 1 9.6569 -2.5388 -3.3577 31 1 5.9718 -1.7215 -0.2822 32 1 5.8791 -2.8413 1.1066 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260568348.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:47 Heat of formation + Delta-G solvation = 73.219808 kcal Electronic energy + Delta-G solvation = -14954.513303 eV Core-core repulsion = 12530.346332 eV Total energy + Delta-G solvation = -2424.166971 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.01029 -38.30248 -33.69353 -32.25514 -31.13676 -29.96730 -28.44296 -26.24430 -22.78899 -22.06336 -21.76213 -20.11684 -19.26349 -17.00299 -16.67529 -15.71873 -15.34805 -14.73632 -14.36870 -14.14312 -13.51427 -13.19454 -12.55978 -12.24259 -12.06346 -11.91122 -11.35210 -11.21927 -10.88636 -10.87308 -10.54569 -9.98159 -9.90374 -9.81452 -9.74164 -9.64648 -9.38544 -9.15378 -8.58368 -6.09278 -4.07386 1.74897 2.41185 3.06402 3.27164 3.35655 3.38826 4.36826 4.40941 4.45836 4.72076 4.91169 4.95980 5.21499 5.26830 5.46385 5.54396 5.68200 5.74189 5.82569 6.00263 6.16898 6.21223 6.39897 6.53661 6.62253 6.66995 6.77330 6.95405 7.15424 7.33778 7.73255 8.19064 8.47672 8.95298 9.53669 11.03906 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036581 B = 0.007463 C = 0.006836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.249610 B = 3751.112751 C = 4094.874653 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.876 3.124 4 H -0.278 1.278 5 H -0.266 1.266 6 H -0.287 1.287 7 C -0.518 4.518 8 H 0.074 0.926 9 C -0.007 4.007 10 C -0.073 4.073 11 H 0.073 0.927 12 C -0.109 4.109 13 C -0.137 4.137 14 C 0.151 3.849 15 H 0.101 0.899 16 N -0.362 5.362 17 C 0.260 3.740 18 N -0.555 5.555 19 C 0.189 3.811 20 N -0.328 5.328 21 C -0.134 4.134 22 H 0.263 0.737 23 H 0.016 0.984 24 H 0.011 0.989 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.216 0.784 30 H 0.213 0.787 31 H 0.070 0.930 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.050 -7.530 -3.285 14.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.134 4.134 3 Si 0.704 3.296 4 H -0.204 1.204 5 H -0.191 1.191 6 H -0.213 1.213 7 C -0.555 4.555 8 H 0.092 0.908 9 C -0.044 4.044 10 C -0.092 4.092 11 H 0.092 0.908 12 C -0.147 4.147 13 C -0.176 4.176 14 C 0.048 3.952 15 H 0.119 0.881 16 N -0.153 5.153 17 C -0.037 4.037 18 N -0.282 5.282 19 C -0.114 4.114 20 N -0.156 5.156 21 C -0.172 4.172 22 H 0.073 0.927 23 H 0.034 0.966 24 H 0.029 0.971 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.233 0.767 30 H 0.229 0.771 31 H 0.089 0.911 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 12.359 -7.525 -2.980 14.773 hybrid contribution 0.160 1.009 0.102 1.027 sum 12.519 -6.515 -2.878 14.403 Atomic orbital electron populations 1.69907 1.06259 1.26894 1.51062 1.25018 0.94692 0.99084 0.94594 0.86837 0.80392 0.83895 0.78503 1.20369 1.19111 1.21350 1.21088 0.89238 0.94401 1.50820 0.90838 1.19624 0.97340 0.91160 0.96268 1.21908 0.90817 0.99441 0.97049 0.90809 1.22563 0.98262 0.95431 0.98400 1.22915 0.93757 0.99736 1.01186 1.22241 0.89747 0.96869 0.86303 0.88117 1.50802 1.04382 1.45331 1.14752 1.26040 1.00567 0.93315 0.83759 1.70560 0.97397 1.26688 1.33603 1.25924 0.99551 0.97333 0.88619 1.77974 0.89678 1.25498 1.22473 1.22803 0.98580 0.97038 0.98821 0.92723 0.96613 0.97061 0.90222 0.91546 0.91066 0.89289 0.76730 0.77074 0.91112 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.11 13.96 55.43 0.77 -26.34 16 2 C 0.07 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.52 -13.88 9.27 -34.44 -0.32 -14.20 16 8 H 0.07 2.10 7.98 -52.49 -0.42 1.68 16 9 C -0.01 -0.15 3.40 -27.88 -0.09 -0.24 16 10 C -0.07 -1.27 2.81 -88.96 -0.25 -1.52 16 11 H 0.07 1.29 8.14 -51.92 -0.42 0.86 16 12 C -0.11 -1.65 5.75 -24.66 -0.14 -1.79 16 13 C -0.14 -1.60 5.93 -25.00 -0.15 -1.75 16 14 C 0.15 1.94 4.05 -66.82 -0.27 1.67 16 15 H 0.10 1.18 8.14 -51.93 -0.42 0.76 16 16 N -0.36 -5.21 3.46 -55.03 -0.19 -5.40 16 17 C 0.26 3.69 11.28 -90.66 -1.02 2.67 16 18 N -0.55 -8.41 11.19 -15.83 -0.18 -8.59 16 19 C 0.19 2.59 13.03 -91.82 -1.20 1.39 16 20 N -0.33 -4.97 12.70 29.29 0.37 -4.59 16 21 C -0.13 -1.99 6.17 -25.62 -0.16 -2.14 16 22 H 0.26 7.44 8.31 -40.82 -0.34 7.11 16 23 H 0.02 0.36 7.12 -51.93 -0.37 -0.01 16 24 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 25 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 26 H 0.07 1.02 6.71 -51.93 -0.35 0.67 16 27 H 0.07 0.76 7.34 -51.93 -0.38 0.38 16 28 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 29 H 0.22 2.56 6.52 -52.49 -0.34 2.22 16 30 H 0.21 2.03 8.06 -52.49 -0.42 1.61 16 31 H 0.07 1.18 7.61 -51.93 -0.40 0.79 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 264.62 15.07 3.99 3.99 Total: -1.00 -31.36 264.62 -7.95 -39.32 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -4.35 Total: -1.02 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -3.70 Total: -14.11 kcal Atomic # 7 Polarization: -45.70 SS G_CDS: 0.78 Total: -44.92 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -31.36 -7.95 -39.32 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260568348.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.537 kcal (2) G-P(sol) polarization free energy of solvation -31.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.318 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds