Wall clock time and date at job start Mon Mar 30 2020 03:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00336 * 2 1 4 4 H 1.48496 * 109.47276 * 240.00453 * 3 2 1 5 5 H 1.48501 * 109.46741 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47071 * 120.00088 * 3 2 1 7 7 C 1.37880 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00544 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47165 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.67091 * 56.77974 * 10 9 7 12 12 C 1.54892 * 110.75159 * 293.54582 * 10 9 7 13 13 C 1.54275 * 104.19155 * 203.55878 * 12 10 9 14 14 C 1.53877 * 106.59901 * 23.61179 * 13 12 10 15 15 H 1.09000 * 110.02827 * 240.66636 * 14 13 12 16 16 N 1.46499 * 110.03135 * 119.28454 * 14 13 12 17 17 C 1.34430 * 126.82421 * 327.10518 * 16 14 13 18 18 N 1.30832 * 108.07308 * 179.72086 * 17 16 14 19 19 C 1.33234 * 109.83313 * 0.40801 * 18 17 16 20 20 N 1.30720 * 108.94479 * 359.58957 * 19 18 17 21 21 C 1.54274 * 106.63849 * 359.97398 * 14 13 12 22 22 H 0.97000 * 120.00080 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46878 * 59.99883 * 9 7 2 24 24 H 1.09001 * 109.46794 * 300.00658 * 9 7 2 25 25 H 1.08997 * 110.48601 * 84.88545 * 12 10 9 26 26 H 1.08996 * 110.48655 * 322.23266 * 12 10 9 27 27 H 1.08993 * 110.03117 * 264.32655 * 13 12 10 28 28 H 1.09003 * 110.07172 * 142.91931 * 13 12 10 29 29 H 1.07997 * 125.95719 * 0.02562 * 17 16 14 30 30 H 1.08002 * 125.53021 * 179.85853 * 19 18 17 31 31 H 1.08996 * 110.48322 * 95.09577 * 21 14 13 32 32 H 1.09005 * 110.48199 * 217.73463 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 1 2.9198 -3.5916 0.8526 12 6 3.0415 -3.7033 -1.3284 13 6 3.5051 -5.1701 -1.4461 14 6 2.5278 -6.0088 -0.6039 15 1 3.0665 -6.5205 0.1937 16 7 1.8437 -6.9862 -1.4542 17 6 1.5005 -6.8310 -2.7446 18 7 0.9144 -7.9305 -3.1438 19 6 0.8574 -8.8030 -2.1385 20 7 1.4168 -8.2717 -1.0832 21 6 1.5045 -5.0233 -0.0027 22 1 -0.4850 0.8400 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6245 -2.5570 0.8896 25 1 3.9008 -3.0346 -1.2787 26 1 2.3983 -3.4380 -2.1674 27 1 4.5177 -5.2740 -1.0567 28 1 3.4709 -5.4908 -2.4873 29 1 1.6817 -5.9538 -3.3479 30 1 0.4237 -9.7908 -2.1886 31 1 0.6127 -4.9712 -0.6273 32 1 1.2429 -5.3178 1.0137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260568367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:50 Heat of formation + Delta-G solvation = 69.385025 kcal Electronic energy + Delta-G solvation = -14742.940016 eV Core-core repulsion = 12318.606757 eV Total energy + Delta-G solvation = -2424.333260 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.99375 -38.18299 -33.71838 -32.30824 -31.12904 -29.64742 -28.25303 -25.87773 -22.87395 -22.41526 -21.76520 -19.86884 -19.31205 -16.93707 -16.31673 -15.62177 -15.33358 -14.76450 -14.50066 -14.11461 -13.42141 -13.17917 -12.39217 -12.15314 -11.95339 -11.69421 -11.20885 -11.05239 -10.84201 -10.70482 -10.55523 -10.36232 -9.91287 -9.84150 -9.69603 -9.58767 -9.24985 -9.01202 -8.40150 -6.04684 -4.07472 1.75211 2.42814 3.05633 3.29335 3.34856 3.36197 4.39649 4.41212 4.48210 4.79943 4.91582 5.00285 5.25872 5.31903 5.52436 5.66225 5.76019 5.79283 5.89308 6.12547 6.22748 6.30143 6.48290 6.53674 6.69567 6.82211 6.94795 7.00005 7.59089 7.72101 7.93549 8.18514 8.35300 8.98804 9.56975 11.06503 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057488 B = 0.005778 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.938277 B = 4844.956545 C = 4955.296710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.057 3.943 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.519 4.519 8 H 0.055 0.945 9 C 0.030 3.970 10 C -0.079 4.079 11 H 0.068 0.932 12 C -0.106 4.106 13 C -0.137 4.137 14 C 0.149 3.851 15 H 0.102 0.898 16 N -0.362 5.362 17 C 0.256 3.744 18 N -0.554 5.554 19 C 0.188 3.812 20 N -0.326 5.326 21 C -0.128 4.128 22 H 0.261 0.739 23 H 0.018 0.982 24 H 0.016 0.984 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.216 0.784 30 H 0.213 0.787 31 H 0.071 0.929 32 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.183 -11.501 -3.229 13.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.144 4.144 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.557 4.557 8 H 0.074 0.926 9 C -0.006 4.006 10 C -0.098 4.098 11 H 0.086 0.914 12 C -0.144 4.144 13 C -0.175 4.175 14 C 0.047 3.953 15 H 0.120 0.880 16 N -0.152 5.152 17 C -0.041 4.041 18 N -0.282 5.282 19 C -0.115 4.115 20 N -0.154 5.154 21 C -0.167 4.167 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.035 0.965 25 H 0.091 0.909 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.232 0.768 30 H 0.229 0.771 31 H 0.090 0.910 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.016 -11.764 -2.808 13.093 hybrid contribution 0.446 1.143 0.002 1.227 sum 5.462 -10.621 -2.806 12.268 Atomic orbital electron populations 1.69945 1.06081 1.26778 1.50629 1.25017 0.94799 0.99233 0.95336 0.86684 0.79602 0.83279 0.78593 1.20240 1.21331 1.20280 1.21155 0.92936 0.90821 1.50779 0.92628 1.19084 0.93403 0.90811 0.97350 1.22218 0.97697 0.93482 0.96418 0.91390 1.22331 1.00445 0.92408 0.99223 1.22683 0.98375 0.97126 0.99358 1.22361 0.93621 0.86941 0.92388 0.88007 1.50851 1.42840 1.11548 1.09945 1.25916 0.94382 0.98684 0.85095 1.70544 1.23820 1.01887 1.31974 1.25926 0.98698 1.00614 0.86275 1.77991 1.20412 0.92839 1.24195 1.22960 0.97743 0.95148 1.00853 0.92905 0.96415 0.96539 0.90938 0.91223 0.90335 0.91258 0.76778 0.77071 0.90992 0.91137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.19 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 4 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -13.74 8.68 -34.44 -0.30 -14.04 16 8 H 0.06 1.41 7.63 -52.49 -0.40 1.01 16 9 C 0.03 0.73 4.50 -27.88 -0.13 0.61 16 10 C -0.08 -1.44 2.87 -88.59 -0.25 -1.69 16 11 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 12 C -0.11 -1.65 5.79 -25.07 -0.15 -1.80 16 13 C -0.14 -1.67 6.33 -25.61 -0.16 -1.84 16 14 C 0.15 2.02 4.04 -66.81 -0.27 1.75 16 15 H 0.10 1.31 8.14 -51.93 -0.42 0.89 16 16 N -0.36 -5.23 3.55 -55.02 -0.20 -5.42 16 17 C 0.26 3.50 11.35 -90.65 -1.03 2.47 16 18 N -0.55 -8.16 11.19 -15.83 -0.18 -8.34 16 19 C 0.19 2.55 13.03 -91.81 -1.20 1.35 16 20 N -0.33 -4.98 12.70 29.29 0.37 -4.61 16 21 C -0.13 -2.04 5.99 -25.03 -0.15 -2.19 16 22 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 23 H 0.02 0.45 8.10 -51.93 -0.42 0.03 16 24 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 26 H 0.07 1.13 8.02 -51.93 -0.42 0.72 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.76 6.27 -51.93 -0.33 0.43 16 29 H 0.22 2.30 7.39 -52.49 -0.39 1.92 16 30 H 0.21 2.01 8.06 -52.49 -0.42 1.58 16 31 H 0.07 1.24 7.96 -51.93 -0.41 0.83 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 LS Contribution 270.15 15.07 4.07 4.07 Total: -1.00 -30.68 270.15 -8.40 -39.07 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -4.46 Total: -1.36 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -3.73 Total: -13.88 kcal Atomic # 7 Polarization: -44.56 SS G_CDS: 0.74 Total: -43.82 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -30.68 -8.40 -39.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260568367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.458 kcal (2) G-P(sol) polarization free energy of solvation -30.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds