Wall clock time and date at job start Mon Mar 30 2020 03:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86802 * 120.00336 * 2 1 4 4 H 1.48496 * 109.47276 * 240.00453 * 3 2 1 5 5 H 1.48501 * 109.46741 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47071 * 120.00088 * 3 2 1 7 7 C 1.37880 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00544 * 179.97438 * 7 2 1 9 9 C 1.50707 * 119.99878 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47165 * 180.02562 * 9 7 2 11 11 H 1.08996 * 110.67091 * 56.77974 * 10 9 7 12 12 C 1.54892 * 110.75159 * 293.54582 * 10 9 7 13 13 C 1.54275 * 104.19155 * 203.55878 * 12 10 9 14 14 C 1.53877 * 106.59901 * 23.61179 * 13 12 10 15 15 H 1.09000 * 110.02827 * 240.66636 * 14 13 12 16 16 N 1.46499 * 110.03135 * 119.28454 * 14 13 12 17 17 C 1.34430 * 126.82421 * 327.10518 * 16 14 13 18 18 N 1.30832 * 108.07308 * 179.72086 * 17 16 14 19 19 C 1.33234 * 109.83313 * 0.40801 * 18 17 16 20 20 N 1.30720 * 108.94479 * 359.58957 * 19 18 17 21 21 C 1.54274 * 106.63849 * 359.97398 * 14 13 12 22 22 H 0.97000 * 120.00080 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46878 * 59.99883 * 9 7 2 24 24 H 1.09001 * 109.46794 * 300.00658 * 9 7 2 25 25 H 1.08997 * 110.48601 * 84.88545 * 12 10 9 26 26 H 1.08996 * 110.48655 * 322.23266 * 12 10 9 27 27 H 1.08993 * 110.03117 * 264.32655 * 13 12 10 28 28 H 1.09003 * 110.07172 * 142.91931 * 13 12 10 29 29 H 1.07997 * 125.95719 * 0.02562 * 17 16 14 30 30 H 1.08002 * 125.53021 * 179.85853 * 19 18 17 31 31 H 1.08996 * 110.48322 * 95.09577 * 21 14 13 32 32 H 1.09005 * 110.48199 * 217.73463 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 1 2.9198 -3.5916 0.8526 12 6 3.0415 -3.7033 -1.3284 13 6 3.5051 -5.1701 -1.4461 14 6 2.5278 -6.0088 -0.6039 15 1 3.0665 -6.5205 0.1937 16 7 1.8437 -6.9862 -1.4542 17 6 1.5005 -6.8310 -2.7446 18 7 0.9144 -7.9305 -3.1438 19 6 0.8574 -8.8030 -2.1385 20 7 1.4168 -8.2717 -1.0832 21 6 1.5045 -5.0233 -0.0027 22 1 -0.4850 0.8400 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6245 -2.5570 0.8896 25 1 3.9008 -3.0346 -1.2787 26 1 2.3983 -3.4380 -2.1674 27 1 4.5177 -5.2740 -1.0567 28 1 3.4709 -5.4908 -2.4873 29 1 1.6817 -5.9538 -3.3479 30 1 0.4237 -9.7908 -2.1886 31 1 0.6127 -4.9712 -0.6273 32 1 1.2429 -5.3178 1.0137 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260568367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:49 Heat of formation + Delta-G solvation = 53.062537 kcal Electronic energy + Delta-G solvation = -14743.647813 eV Core-core repulsion = 12318.606757 eV Total energy + Delta-G solvation = -2425.041056 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -43.05698 -39.45843 -35.43811 -33.87084 -32.25638 -31.12555 -29.53800 -27.51183 -24.50973 -23.68676 -22.83884 -20.97801 -20.79043 -18.50271 -17.88243 -16.83817 -16.54648 -16.40691 -15.82337 -15.14106 -14.86627 -14.43076 -14.20244 -13.62691 -13.32009 -13.23165 -12.69087 -12.60397 -12.41480 -12.27517 -11.99152 -11.76008 -11.38645 -11.17103 -11.05475 -10.98565 -10.77096 -10.50878 -10.46096 -8.15931 -6.25765 0.68869 1.38071 1.43247 1.45033 1.52634 2.01396 2.43745 3.18157 3.37123 3.49504 3.61391 3.87516 3.96817 4.15275 4.36631 4.44422 4.54777 4.62788 4.70672 4.84734 4.95780 5.07087 5.22226 5.33648 5.40321 5.47319 5.52243 5.55588 5.78882 5.89019 5.92313 6.28662 6.91449 7.13092 7.43623 8.95821 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.057488 B = 0.005778 C = 0.005649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 486.938277 B = 4844.956545 C = 4955.296710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.002 4.002 3 Si 0.960 3.040 4 H -0.264 1.264 5 H -0.290 1.290 6 H -0.268 1.268 7 C -0.527 4.527 8 H 0.067 0.933 9 C 0.034 3.966 10 C -0.076 4.076 11 H 0.073 0.927 12 C -0.102 4.102 13 C -0.121 4.121 14 C 0.157 3.843 15 H 0.115 0.885 16 N -0.370 5.370 17 C 0.254 3.746 18 N -0.575 5.575 19 C 0.189 3.811 20 N -0.354 5.354 21 C -0.121 4.121 22 H 0.261 0.739 23 H -0.009 1.009 24 H -0.018 1.018 25 H 0.072 0.928 26 H 0.057 0.943 27 H 0.103 0.897 28 H 0.088 0.912 29 H 0.239 0.761 30 H 0.245 0.755 31 H 0.052 0.948 32 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.149 -12.081 -3.796 14.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.200 4.200 3 Si 0.785 3.215 4 H -0.189 1.189 5 H -0.216 1.216 6 H -0.193 1.193 7 C -0.565 4.565 8 H 0.085 0.915 9 C -0.003 4.003 10 C -0.095 4.095 11 H 0.091 0.909 12 C -0.140 4.140 13 C -0.159 4.159 14 C 0.055 3.945 15 H 0.133 0.867 16 N -0.160 5.160 17 C -0.042 4.042 18 N -0.303 5.303 19 C -0.113 4.113 20 N -0.182 5.182 21 C -0.160 4.160 22 H 0.070 0.930 23 H 0.009 0.991 24 H 0.000 1.000 25 H 0.091 0.909 26 H 0.076 0.924 27 H 0.122 0.878 28 H 0.106 0.894 29 H 0.255 0.745 30 H 0.261 0.739 31 H 0.071 0.929 32 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.002 -12.358 -3.372 14.598 hybrid contribution -0.246 1.296 0.182 1.332 sum 6.756 -11.062 -3.190 13.348 Atomic orbital electron populations 1.70099 1.07929 1.27599 1.52261 1.25953 0.95592 1.03283 0.95135 0.85578 0.78253 0.78458 0.79236 1.18904 1.21561 1.19284 1.21622 0.93662 0.91760 1.49500 0.91474 1.18968 0.93929 0.93017 0.94354 1.22028 0.96806 0.92231 0.98419 0.90904 1.22230 0.99727 0.95105 0.96917 1.22582 0.98917 0.93890 1.00520 1.22266 0.92717 0.86517 0.92979 0.86688 1.50875 1.43321 1.11546 1.10223 1.26453 0.93481 0.99149 0.85091 1.70584 1.24525 1.02561 1.32671 1.26628 0.97620 1.01574 0.85471 1.77957 1.21550 0.93474 1.25210 1.22793 0.97580 0.94829 1.00788 0.93048 0.99109 0.99986 0.90890 0.92409 0.87843 0.89365 0.74465 0.73888 0.92927 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.36 13.29 21.45 0.28 -56.07 16 2 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 3 Si 0.96 42.86 29.54 68.60 2.03 44.89 16 4 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.29 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 7 C -0.53 -28.14 8.68 25.60 0.22 -27.92 16 8 H 0.07 3.35 7.63 -2.91 -0.02 3.33 16 9 C 0.03 1.71 4.50 29.85 0.13 1.84 16 10 C -0.08 -2.73 2.87 -9.48 -0.03 -2.76 16 11 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 12 C -0.10 -3.01 5.79 31.67 0.18 -2.82 16 13 C -0.12 -2.57 6.33 31.32 0.20 -2.37 16 14 C 0.16 3.91 4.04 45.72 0.18 4.10 16 15 H 0.12 2.62 8.14 -2.39 -0.02 2.61 16 16 N -0.37 -9.98 3.55 -327.98 -1.16 -11.14 16 17 C 0.25 6.48 11.35 180.36 2.05 8.52 16 18 N -0.58 -15.91 11.19 -204.00 -2.28 -18.19 16 19 C 0.19 4.79 13.03 180.77 2.36 7.15 16 20 N -0.35 -10.20 12.70 -61.24 -0.78 -10.98 16 21 C -0.12 -3.81 5.99 31.70 0.19 -3.62 16 22 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 23 H -0.01 -0.51 8.10 -2.39 -0.02 -0.53 16 24 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 25 H 0.07 2.15 8.08 -2.39 -0.02 2.13 16 26 H 0.06 1.83 8.02 -2.39 -0.02 1.81 16 27 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.09 1.60 6.27 -2.39 -0.01 1.59 16 29 H 0.24 4.56 7.39 -2.91 -0.02 4.54 16 30 H 0.25 4.04 8.06 -2.91 -0.02 4.01 16 31 H 0.05 1.85 7.96 -2.39 -0.02 1.83 16 32 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -66.86 270.15 5.13 -61.73 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: 1.09 Total: 7.32 kcal Atomic # 6 Polarization: -23.50 SS G_CDS: 5.95 Total: -17.55 kcal Atomic # 7 Polarization: -92.45 SS G_CDS: -3.94 Total: -96.38 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -66.86 5.13 -61.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260568367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.788 kcal (2) G-P(sol) polarization free energy of solvation -66.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds