Wall clock time and date at job start Mon Mar 30 2020 03:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99260 * 2 1 4 4 H 1.48510 * 109.46796 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47693 * 299.99892 * 3 2 1 6 6 H 1.48498 * 109.47263 * 60.00413 * 3 2 1 7 7 C 1.37867 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00172 * 174.92624 * 7 2 1 9 9 C 1.50703 * 119.99890 * 355.20690 * 7 2 1 10 10 N 1.46493 * 109.47118 * 305.21371 * 9 7 2 11 11 C 1.34425 * 126.82445 * 285.39498 * 10 9 7 12 12 N 1.30832 * 108.07951 * 179.97438 * 11 10 9 13 13 C 1.33242 * 109.82864 * 0.02562 * 12 11 10 14 14 N 1.30711 * 108.94364 * 359.74993 * 13 12 11 15 15 C 1.53002 * 109.47092 * 185.21055 * 9 7 2 16 16 C 1.53001 * 109.47170 * 179.97438 * 15 9 7 17 17 C 1.53007 * 109.46894 * 60.00435 * 16 15 9 18 18 C 1.53000 * 109.46985 * 300.00296 * 17 16 15 19 19 C 1.52993 * 109.47738 * 59.99715 * 18 17 16 20 20 H 0.97001 * 120.00582 * 0.02562 * 1 2 3 21 21 H 1.08006 * 125.96337 * 359.92794 * 11 10 9 22 22 H 1.07999 * 125.52607 * 179.97438 * 13 12 11 23 23 H 1.08991 * 109.47222 * 300.00106 * 15 9 7 24 24 H 1.09003 * 109.46597 * 60.00430 * 15 9 7 25 25 H 1.08998 * 109.47553 * 300.01013 * 16 15 9 26 26 H 1.08998 * 109.47489 * 180.02562 * 16 15 9 27 27 H 1.08997 * 109.46986 * 180.02562 * 17 16 15 28 28 H 1.09000 * 109.47066 * 59.99994 * 17 16 15 29 29 H 1.09004 * 109.46575 * 299.99496 * 18 17 16 30 30 H 1.09000 * 109.46880 * 180.02562 * 18 17 16 31 31 H 1.08998 * 109.47681 * 180.02562 * 19 18 17 32 32 H 1.09000 * 109.46856 * 59.99970 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0814 -1.1956 -0.0832 9 6 1.2551 -2.4968 0.1079 10 7 0.4054 -2.4735 1.3010 11 6 0.8062 -2.5969 2.5782 12 7 -0.2515 -2.5234 3.3446 13 6 -1.3410 -2.3546 2.5963 14 7 -0.9893 -2.3128 1.3381 15 6 2.2529 -3.6518 0.2149 16 6 1.4921 -4.9746 0.3256 17 6 0.6204 -5.1671 -0.9171 18 6 -0.3773 -4.0121 -1.0241 19 6 0.3835 -2.6894 -1.1347 20 1 -0.4851 0.8400 -0.0004 21 1 1.8239 -2.7336 2.9132 22 1 -2.3505 -2.2632 2.9692 23 1 2.8851 -3.6691 -0.6728 24 1 2.8736 -3.5148 1.1004 25 1 0.8600 -4.9570 1.2135 26 1 2.2028 -5.7973 0.4023 27 1 0.0780 -6.1092 -0.8380 28 1 1.2524 -5.1847 -1.8050 29 1 -1.0093 -3.9946 -0.1361 30 1 -0.9986 -4.1495 -1.9091 31 1 -0.3273 -1.8665 -1.2105 32 1 1.0155 -2.7070 -2.0227 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260570489.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:15 Heat of formation + Delta-G solvation = 75.464587 kcal Electronic energy + Delta-G solvation = -16117.517776 eV Core-core repulsion = 13693.448146 eV Total energy + Delta-G solvation = -2424.069630 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.78526 -37.65459 -33.37976 -31.37871 -30.39639 -29.35733 -28.56819 -25.07965 -22.26255 -21.92988 -20.47366 -20.17118 -18.60427 -16.98423 -15.55714 -14.85795 -14.18911 -14.10907 -13.69625 -13.31646 -12.93252 -12.79137 -12.28020 -11.91386 -11.48169 -11.42276 -11.10278 -10.87845 -10.70419 -10.34476 -10.31020 -10.19126 -9.73262 -9.49689 -9.10928 -8.71760 -8.57209 -8.30117 -8.04885 -6.20777 -4.44111 3.12981 3.19169 3.25926 3.27620 3.89949 4.20470 4.22790 5.11027 5.44676 5.44860 5.48155 5.53091 5.94007 6.04941 6.20014 6.20788 6.25956 6.27713 6.43586 6.58390 6.62633 6.68471 6.84404 6.90802 7.09558 7.26543 7.52364 7.68054 7.84779 7.87230 7.99743 8.33353 8.67258 9.27585 9.47551 10.74233 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026277 B = 0.014435 C = 0.011765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.323237 B = 1939.299552 C = 2379.365006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.078 3.922 3 Si 0.893 3.107 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.547 4.547 8 H 0.071 0.929 9 C 0.298 3.702 10 N -0.292 5.292 11 C 0.219 3.781 12 N -0.577 5.577 13 C 0.133 3.867 14 N -0.271 5.271 15 C -0.117 4.117 16 C -0.120 4.120 17 C -0.115 4.115 18 C -0.126 4.126 19 C -0.100 4.100 20 H 0.265 0.735 21 H 0.191 0.809 22 H 0.189 0.811 23 H 0.072 0.928 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.043 0.957 31 H 0.100 0.900 32 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -5.984 -0.734 6.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.131 4.131 3 Si 0.720 3.280 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.586 4.586 8 H 0.089 0.911 9 C 0.219 3.781 10 N -0.082 5.082 11 C -0.078 4.078 12 N -0.308 5.308 13 C -0.169 4.169 14 N -0.100 5.100 15 C -0.155 4.155 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.164 4.164 19 C -0.139 4.139 20 H 0.075 0.925 21 H 0.208 0.792 22 H 0.206 0.794 23 H 0.091 0.909 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.062 0.938 31 H 0.118 0.882 32 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 1.194 -5.802 -1.077 6.021 hybrid contribution 0.706 1.115 0.110 1.324 sum 1.900 -4.687 -0.968 5.149 Atomic orbital electron populations 1.70044 1.05603 1.26993 1.43962 1.25116 0.94942 0.99576 0.93513 0.86514 0.80295 0.83347 0.77804 1.19431 1.20722 1.20853 1.21267 0.93645 0.89432 1.54263 0.91098 1.18563 0.85762 0.93480 0.80309 1.51486 1.04006 1.45366 1.07335 1.25234 0.99171 1.00405 0.82961 1.70252 0.97873 1.27085 1.35594 1.25483 0.98550 1.04337 0.88491 1.77920 0.91927 1.20554 1.19634 1.21907 0.97954 0.93807 1.01869 1.21557 0.98444 0.97370 0.98388 1.21531 0.97963 0.98109 0.97691 1.21708 0.97792 0.95467 1.01385 1.21600 0.99289 0.96857 0.96144 0.92516 0.79218 0.79389 0.90905 0.92494 0.92635 0.93102 0.93544 0.92726 0.91161 0.93834 0.88159 0.93284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -22.39 10.05 55.43 0.56 -21.83 16 2 C 0.08 2.01 5.24 -17.82 -0.09 1.91 16 3 Si 0.89 20.21 29.54 -169.99 -5.02 15.19 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 5 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.55 -13.54 8.11 -34.44 -0.28 -13.82 16 8 H 0.07 1.72 7.75 -52.49 -0.41 1.31 16 9 C 0.30 6.67 0.45 -132.97 -0.06 6.61 16 10 N -0.29 -6.73 1.80 -50.96 -0.09 -6.82 16 11 C 0.22 4.82 11.21 -90.66 -1.02 3.80 16 12 N -0.58 -13.06 11.19 -15.83 -0.18 -13.23 16 13 C 0.13 2.96 13.03 -91.81 -1.20 1.77 16 14 N -0.27 -6.48 9.10 29.29 0.27 -6.21 16 15 C -0.12 -2.18 4.38 -26.73 -0.12 -2.29 16 16 C -0.12 -2.04 5.75 -26.73 -0.15 -2.20 16 17 C -0.12 -1.94 5.92 -26.73 -0.16 -2.09 16 18 C -0.13 -2.45 5.71 -26.73 -0.15 -2.61 16 19 C -0.10 -2.23 4.25 -26.73 -0.11 -2.35 16 20 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 21 H 0.19 3.59 7.62 -52.48 -0.40 3.19 16 22 H 0.19 3.49 8.06 -52.49 -0.42 3.07 16 23 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 24 H 0.06 1.01 7.45 -51.93 -0.39 0.62 16 25 H 0.05 1.04 7.11 -51.93 -0.37 0.67 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 1.51 6.10 -51.93 -0.32 1.19 16 30 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 31 H 0.10 2.57 6.24 -51.93 -0.32 2.25 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 254.55 15.07 3.84 3.84 Total: -1.00 -27.92 254.55 -8.27 -36.19 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -4.30 Total: 4.14 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -3.34 Total: -11.26 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.55 Total: -48.09 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -27.92 -8.27 -36.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260570489.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.651 kcal (2) G-P(sol) polarization free energy of solvation -27.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.186 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds