Wall clock time and date at job start Mon Mar 30 2020 03:17:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 119.99260 * 2 1 4 4 H 1.48510 * 109.46796 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47693 * 299.99892 * 3 2 1 6 6 H 1.48498 * 109.47263 * 60.00413 * 3 2 1 7 7 C 1.37867 * 120.00465 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00172 * 174.92624 * 7 2 1 9 9 C 1.50703 * 119.99890 * 355.20690 * 7 2 1 10 10 N 1.46493 * 109.47118 * 305.21371 * 9 7 2 11 11 C 1.34425 * 126.82445 * 285.39498 * 10 9 7 12 12 N 1.30832 * 108.07951 * 179.97438 * 11 10 9 13 13 C 1.33242 * 109.82864 * 0.02562 * 12 11 10 14 14 N 1.30711 * 108.94364 * 359.74993 * 13 12 11 15 15 C 1.53002 * 109.47092 * 185.21055 * 9 7 2 16 16 C 1.53001 * 109.47170 * 179.97438 * 15 9 7 17 17 C 1.53007 * 109.46894 * 60.00435 * 16 15 9 18 18 C 1.53000 * 109.46985 * 300.00296 * 17 16 15 19 19 C 1.52993 * 109.47738 * 59.99715 * 18 17 16 20 20 H 0.97001 * 120.00582 * 0.02562 * 1 2 3 21 21 H 1.08006 * 125.96337 * 359.92794 * 11 10 9 22 22 H 1.07999 * 125.52607 * 179.97438 * 13 12 11 23 23 H 1.08991 * 109.47222 * 300.00106 * 15 9 7 24 24 H 1.09003 * 109.46597 * 60.00430 * 15 9 7 25 25 H 1.08998 * 109.47553 * 300.01013 * 16 15 9 26 26 H 1.08998 * 109.47489 * 180.02562 * 16 15 9 27 27 H 1.08997 * 109.46986 * 180.02562 * 17 16 15 28 28 H 1.09000 * 109.47066 * 59.99994 * 17 16 15 29 29 H 1.09004 * 109.46575 * 299.99496 * 18 17 16 30 30 H 1.09000 * 109.46880 * 180.02562 * 18 17 16 31 31 H 1.08998 * 109.47681 * 180.02562 * 19 18 17 32 32 H 1.09000 * 109.46856 * 59.99970 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 -0.0006 5 1 1.8902 2.3966 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0814 -1.1956 -0.0832 9 6 1.2551 -2.4968 0.1079 10 7 0.4054 -2.4735 1.3010 11 6 0.8062 -2.5969 2.5782 12 7 -0.2515 -2.5234 3.3446 13 6 -1.3410 -2.3546 2.5963 14 7 -0.9893 -2.3128 1.3381 15 6 2.2529 -3.6518 0.2149 16 6 1.4921 -4.9746 0.3256 17 6 0.6204 -5.1671 -0.9171 18 6 -0.3773 -4.0121 -1.0241 19 6 0.3835 -2.6894 -1.1347 20 1 -0.4851 0.8400 -0.0004 21 1 1.8239 -2.7336 2.9132 22 1 -2.3505 -2.2632 2.9692 23 1 2.8851 -3.6691 -0.6728 24 1 2.8736 -3.5148 1.1004 25 1 0.8600 -4.9570 1.2135 26 1 2.2028 -5.7973 0.4023 27 1 0.0780 -6.1092 -0.8380 28 1 1.2524 -5.1847 -1.8050 29 1 -1.0093 -3.9946 -0.1361 30 1 -0.9986 -4.1495 -1.9091 31 1 -0.3273 -1.8665 -1.2105 32 1 1.0155 -2.7070 -2.0227 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260570489.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:17:15 Heat of formation + Delta-G solvation = 62.646541 kcal Electronic energy + Delta-G solvation = -16118.073608 eV Core-core repulsion = 13693.448146 eV Total energy + Delta-G solvation = -2424.625462 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.50930 -39.24245 -35.13156 -33.13509 -32.04791 -31.00314 -30.26126 -26.88658 -23.95547 -23.48568 -22.07348 -21.86421 -20.23782 -18.81967 -17.19327 -16.72337 -15.91107 -15.63804 -15.35096 -14.88326 -14.56627 -14.41355 -13.97790 -13.57085 -13.05253 -13.02491 -12.86738 -12.59633 -12.35235 -12.09308 -11.94856 -11.77775 -11.31866 -11.16611 -10.73268 -10.50740 -10.38096 -10.07544 -9.80478 -8.12510 -6.40289 1.33024 1.39962 1.44735 1.48817 2.19640 2.34196 2.48550 3.18845 3.83291 4.00417 4.05058 4.14207 4.36708 4.51678 4.65582 4.67110 4.78221 4.89725 4.95447 5.01293 5.15962 5.23003 5.33938 5.42822 5.48486 5.58089 5.65758 5.90816 6.08431 6.13140 6.18182 6.53256 6.84447 7.33845 7.73134 8.79148 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026277 B = 0.014435 C = 0.011765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.323237 B = 1939.299552 C = 2379.365006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.035 3.965 3 Si 0.946 3.054 4 H -0.259 1.259 5 H -0.283 1.283 6 H -0.294 1.294 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.288 3.712 10 N -0.295 5.295 11 C 0.213 3.787 12 N -0.588 5.588 13 C 0.128 3.872 14 N -0.300 5.300 15 C -0.113 4.113 16 C -0.113 4.113 17 C -0.111 4.111 18 C -0.120 4.120 19 C -0.096 4.096 20 H 0.256 0.744 21 H 0.218 0.782 22 H 0.217 0.783 23 H 0.083 0.917 24 H 0.066 0.934 25 H 0.036 0.964 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.051 0.949 31 H 0.060 0.940 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.093 -7.244 -0.697 7.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.172 4.172 3 Si 0.773 3.227 4 H -0.182 1.182 5 H -0.209 1.209 6 H -0.221 1.221 7 C -0.594 4.594 8 H 0.092 0.908 9 C 0.208 3.792 10 N -0.084 5.084 11 C -0.083 4.083 12 N -0.319 5.319 13 C -0.174 4.174 14 N -0.129 5.129 15 C -0.151 4.151 16 C -0.151 4.151 17 C -0.148 4.148 18 C -0.158 4.158 19 C -0.135 4.135 20 H 0.065 0.935 21 H 0.234 0.766 22 H 0.234 0.766 23 H 0.102 0.898 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.486 -7.071 -1.050 7.568 hybrid contribution 0.299 1.502 0.100 1.534 sum 2.785 -5.569 -0.950 6.299 Atomic orbital electron populations 1.70210 1.06692 1.26721 1.45794 1.25749 0.95470 1.02221 0.93717 0.85689 0.79841 0.80269 0.76930 1.18233 1.20876 1.22090 1.21629 0.93956 0.90560 1.53225 0.90795 1.18710 0.86258 0.94098 0.80109 1.51334 1.03784 1.45562 1.07753 1.25824 1.00261 0.99614 0.82637 1.70282 0.98175 1.27621 1.35831 1.26098 0.99798 1.03374 0.88133 1.77894 0.92769 1.21590 1.20667 1.21874 0.97257 0.93166 1.02836 1.21508 0.98589 0.97402 0.97553 1.21511 0.97540 0.97461 0.98322 1.21606 0.98119 0.95330 1.00714 1.21453 0.98669 0.96989 0.96376 0.93451 0.76559 0.76649 0.89840 0.91575 0.94546 0.89886 0.91589 0.91151 0.93341 0.93022 0.92172 0.93105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -47.08 10.05 21.44 0.22 -46.87 16 2 C 0.03 1.78 5.24 84.65 0.44 2.22 16 3 Si 0.95 41.59 29.54 68.60 2.03 43.62 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.55 -27.03 8.11 25.60 0.21 -26.82 16 8 H 0.07 3.48 7.75 -2.91 -0.02 3.45 16 9 C 0.29 12.60 0.45 2.86 0.00 12.60 16 10 N -0.29 -13.40 1.80 -315.15 -0.57 -13.97 16 11 C 0.21 9.11 11.21 180.36 2.02 11.13 16 12 N -0.59 -26.02 11.19 -204.00 -2.28 -28.30 16 13 C 0.13 5.62 13.03 180.77 2.36 7.97 16 14 N -0.30 -14.39 9.10 -61.25 -0.56 -14.94 16 15 C -0.11 -3.91 4.38 30.60 0.13 -3.78 16 16 C -0.11 -3.48 5.75 30.60 0.18 -3.31 16 17 C -0.11 -3.38 5.92 30.60 0.18 -3.20 16 18 C -0.12 -4.55 5.71 30.59 0.17 -4.38 16 19 C -0.10 -4.25 4.25 30.59 0.13 -4.12 16 20 H 0.26 13.90 8.31 -92.71 -0.77 13.13 16 21 H 0.22 7.73 7.62 -2.91 -0.02 7.71 16 22 H 0.22 7.81 8.06 -2.91 -0.02 7.79 16 23 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 24 H 0.07 2.16 7.45 -2.39 -0.02 2.14 16 25 H 0.04 1.26 7.11 -2.39 -0.02 1.25 16 26 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 29 H 0.05 2.06 6.10 -2.38 -0.01 2.04 16 30 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 3.16 6.24 -2.39 -0.01 3.14 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 Total: -1.00 -59.30 254.55 5.76 -53.53 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 1.10 Total: 18.61 kcal Atomic # 6 Polarization: -17.51 SS G_CDS: 5.83 Total: -11.68 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -3.19 Total: -104.08 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -59.30 5.76 -53.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260570489.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.181 kcal (2) G-P(sol) polarization free energy of solvation -59.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.535 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds