Wall clock time and date at job start Mon Mar 30 2020 03:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00244 * 2 1 4 4 H 1.48500 * 109.47098 * 239.99607 * 3 2 1 5 5 H 1.48500 * 109.46938 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47637 * 119.99226 * 3 2 1 7 7 C 1.37884 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99515 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46960 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.01895 * 305.70330 * 10 9 7 12 12 C 1.53873 * 110.03127 * 67.09319 * 10 9 7 13 13 C 1.54269 * 106.59646 * 119.33247 * 12 10 9 14 14 C 1.54882 * 104.19831 * 23.61137 * 13 12 10 15 15 C 1.54273 * 110.07278 * 184.28220 * 10 9 7 16 16 H 1.09001 * 110.48533 * 335.76669 * 15 10 9 17 17 N 1.46500 * 110.48289 * 98.40529 * 15 10 9 18 18 C 1.35498 * 126.97939 * 59.69076 * 17 15 10 19 19 N 1.30520 * 107.30689 * 179.83383 * 18 17 15 20 20 N 1.28599 * 109.67031 * 0.43742 * 19 18 17 21 21 C 1.30514 * 109.67457 * 359.72164 * 20 19 18 22 22 H 0.96994 * 119.99905 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47224 * 60.00033 * 9 7 2 24 24 H 1.08994 * 109.47350 * 300.00047 * 9 7 2 25 25 H 1.08996 * 110.03511 * 238.61485 * 12 10 9 26 26 H 1.09002 * 110.03347 * 0.04560 * 12 10 9 27 27 H 1.09000 * 110.48429 * 142.29450 * 13 12 10 28 28 H 1.08998 * 110.48673 * 264.79629 * 13 12 10 29 29 H 1.08998 * 110.75605 * 80.36842 * 14 13 12 30 30 H 1.09003 * 110.75885 * 203.74658 * 14 13 12 31 31 H 1.07995 * 126.34603 * 359.97438 * 18 17 15 32 32 H 1.08004 * 126.34830 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9420 -3.5574 -0.8311 12 6 3.0154 -3.6971 1.3322 13 6 2.7024 -5.0585 1.9867 14 6 2.2967 -5.9665 0.7993 15 6 1.4910 -5.0036 -0.1077 16 1 0.4702 -4.8979 0.2597 17 7 1.4921 -5.4820 -1.4923 18 6 2.5748 -5.7688 -2.2547 19 7 2.1364 -6.1653 -3.4184 20 7 0.8508 -6.1342 -3.4301 21 6 0.4107 -5.7222 -2.2726 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5568 0.8902 25 1 4.0859 -3.6093 1.1468 26 1 2.6803 -2.8860 1.9788 27 1 3.5871 -5.4546 2.4850 28 1 1.8788 -4.9614 2.6940 29 1 3.1790 -6.3395 0.2792 30 1 1.6703 -6.7910 1.1399 31 1 3.6090 -5.6869 -1.9544 32 1 -0.6238 -5.5956 -1.9892 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260581681.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:46 Heat of formation + Delta-G solvation = 57.580958 kcal Electronic energy + Delta-G solvation = -15064.675061 eV Core-core repulsion = 12639.829938 eV Total energy + Delta-G solvation = -2424.845122 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.76897 -38.38902 -33.68635 -33.04249 -30.43250 -30.22487 -27.77358 -25.98277 -23.07304 -22.35115 -21.77394 -20.34111 -19.13238 -17.48861 -16.22032 -15.43789 -15.12661 -14.90293 -14.40878 -14.30887 -13.68210 -13.09461 -12.50097 -12.28343 -11.92965 -11.62233 -11.14601 -11.01248 -10.90864 -10.79791 -10.67896 -10.29241 -10.08987 -10.03937 -9.82314 -9.35019 -9.10316 -9.06636 -8.46836 -6.11774 -4.14808 2.18153 2.85789 3.23001 3.26070 3.31548 3.33339 4.35298 4.61426 4.73833 4.83637 4.86538 5.10108 5.24398 5.34050 5.52090 5.62484 5.67876 5.74044 5.81152 5.91165 6.09274 6.16822 6.33499 6.49834 6.60422 6.67587 6.90860 7.21950 7.45989 7.57551 7.84404 8.25627 8.90350 9.03675 9.50193 10.99302 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028280 B = 0.008376 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.865397 B = 3342.029323 C = 3889.573745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.031 3.969 10 C -0.091 4.091 11 H 0.068 0.932 12 C -0.110 4.110 13 C -0.122 4.122 14 C -0.129 4.129 15 C 0.124 3.876 16 H 0.110 0.890 17 N -0.454 5.454 18 C 0.152 3.848 19 N -0.309 5.309 20 N -0.310 5.310 21 C 0.153 3.847 22 H 0.262 0.738 23 H 0.014 0.986 24 H 0.020 0.980 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.065 0.935 28 H 0.068 0.932 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.210 0.790 32 H 0.213 0.787 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.595 -10.080 4.249 11.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.006 4.006 10 C -0.110 4.110 11 H 0.086 0.914 12 C -0.148 4.148 13 C -0.160 4.160 14 C -0.168 4.168 15 C 0.021 3.979 16 H 0.128 0.872 17 N -0.142 5.142 18 C -0.136 4.136 19 N -0.149 5.149 20 N -0.150 5.150 21 C -0.135 4.135 22 H 0.072 0.928 23 H 0.032 0.968 24 H 0.039 0.961 25 H 0.075 0.925 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.227 0.773 32 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 3.430 -10.448 2.837 11.356 hybrid contribution 0.372 1.588 1.370 2.130 sum 3.802 -8.860 4.208 10.519 Atomic orbital electron populations 1.69932 1.06063 1.26929 1.50310 1.25007 0.94842 0.99305 0.95121 0.86660 0.79626 0.83108 0.78667 1.20221 1.21227 1.20179 1.21091 0.92939 0.90670 1.51212 0.92627 1.19199 0.93272 0.90896 0.97206 1.22269 0.98278 0.92723 0.97719 0.91369 1.22121 0.99449 0.96647 0.96573 1.22343 1.01212 0.95791 0.96682 1.22856 0.99719 0.97429 0.96767 1.22892 1.02878 0.95961 0.76139 0.87153 1.46587 1.06654 1.47111 1.13884 1.26214 0.95448 1.02805 0.89132 1.74173 1.03526 1.19387 1.17821 1.74162 1.03450 1.19091 1.18289 1.26442 0.95415 1.02830 0.88851 0.92812 0.96797 0.96146 0.92454 0.89854 0.91579 0.91298 0.90905 0.91228 0.77348 0.77027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.80 13.29 55.43 0.74 -25.06 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 7 C -0.52 -13.74 8.43 -34.44 -0.29 -14.03 16 8 H 0.06 1.43 7.69 -52.49 -0.40 1.03 16 9 C 0.03 0.73 4.12 -27.88 -0.11 0.61 16 10 C -0.09 -1.60 2.56 -89.50 -0.23 -1.82 16 11 H 0.07 1.28 7.40 -51.93 -0.38 0.89 16 12 C -0.11 -1.69 6.07 -25.61 -0.16 -1.84 16 13 C -0.12 -1.45 6.83 -25.07 -0.17 -1.62 16 14 C -0.13 -1.48 6.47 -24.74 -0.16 -1.64 16 15 C 0.12 1.78 3.17 -66.27 -0.21 1.57 16 16 H 0.11 1.56 7.83 -51.93 -0.41 1.15 16 17 N -0.45 -6.94 2.70 -111.07 -0.30 -7.24 16 18 C 0.15 2.37 11.16 -89.94 -1.00 1.36 16 19 N -0.31 -5.70 12.21 29.69 0.36 -5.34 16 20 N -0.31 -5.76 12.21 29.69 0.36 -5.40 16 21 C 0.15 2.42 12.73 -89.95 -1.14 1.28 16 22 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.07 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.08 1.47 7.38 -51.93 -0.38 1.09 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.79 7.46 -51.93 -0.39 0.40 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.21 2.52 8.01 -52.49 -0.42 2.10 16 32 H 0.21 2.60 8.06 -52.48 -0.42 2.17 16 LS Contribution 269.27 15.07 4.06 4.06 Total: -1.00 -31.08 269.27 -7.86 -38.94 By element: Atomic # 1 Polarization: 3.13 SS G_CDS: -4.48 Total: -1.35 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -3.58 Total: -14.61 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 1.16 Total: -43.05 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.08 -7.86 -38.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260581681.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.517 kcal (2) G-P(sol) polarization free energy of solvation -31.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds