Wall clock time and date at job start Mon Mar 30 2020 03:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00244 * 2 1 4 4 H 1.48500 * 109.47098 * 239.99607 * 3 2 1 5 5 H 1.48500 * 109.46938 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47637 * 119.99226 * 3 2 1 7 7 C 1.37884 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99515 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46960 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.01895 * 305.70330 * 10 9 7 12 12 C 1.53873 * 110.03127 * 67.09319 * 10 9 7 13 13 C 1.54269 * 106.59646 * 119.33247 * 12 10 9 14 14 C 1.54882 * 104.19831 * 23.61137 * 13 12 10 15 15 C 1.54273 * 110.07278 * 184.28220 * 10 9 7 16 16 H 1.09001 * 110.48533 * 335.76669 * 15 10 9 17 17 N 1.46500 * 110.48289 * 98.40529 * 15 10 9 18 18 C 1.35498 * 126.97939 * 59.69076 * 17 15 10 19 19 N 1.30520 * 107.30689 * 179.83383 * 18 17 15 20 20 N 1.28599 * 109.67031 * 0.43742 * 19 18 17 21 21 C 1.30514 * 109.67457 * 359.72164 * 20 19 18 22 22 H 0.96994 * 119.99905 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47224 * 60.00033 * 9 7 2 24 24 H 1.08994 * 109.47350 * 300.00047 * 9 7 2 25 25 H 1.08996 * 110.03511 * 238.61485 * 12 10 9 26 26 H 1.09002 * 110.03347 * 0.04560 * 12 10 9 27 27 H 1.09000 * 110.48429 * 142.29450 * 13 12 10 28 28 H 1.08998 * 110.48673 * 264.79629 * 13 12 10 29 29 H 1.08998 * 110.75605 * 80.36842 * 14 13 12 30 30 H 1.09003 * 110.75885 * 203.74658 * 14 13 12 31 31 H 1.07995 * 126.34603 * 359.97438 * 18 17 15 32 32 H 1.08004 * 126.34830 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2124 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9420 -3.5574 -0.8311 12 6 3.0154 -3.6971 1.3322 13 6 2.7024 -5.0585 1.9867 14 6 2.2967 -5.9665 0.7993 15 6 1.4910 -5.0036 -0.1077 16 1 0.4702 -4.8979 0.2597 17 7 1.4921 -5.4820 -1.4923 18 6 2.5748 -5.7688 -2.2547 19 7 2.1364 -6.1653 -3.4184 20 7 0.8508 -6.1342 -3.4301 21 6 0.4107 -5.7222 -2.2726 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5568 0.8902 25 1 4.0859 -3.6093 1.1468 26 1 2.6803 -2.8860 1.9788 27 1 3.5871 -5.4546 2.4850 28 1 1.8788 -4.9614 2.6940 29 1 3.1790 -6.3395 0.2792 30 1 1.6703 -6.7910 1.1399 31 1 3.6090 -5.6869 -1.9544 32 1 -0.6238 -5.5956 -1.9892 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260581681.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:46 Heat of formation + Delta-G solvation = 41.406503 kcal Electronic energy + Delta-G solvation = -15065.376438 eV Core-core repulsion = 12639.829938 eV Total energy + Delta-G solvation = -2425.546499 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.02553 -39.63606 -35.34526 -34.57860 -32.05917 -31.50218 -28.92565 -27.69141 -24.64102 -23.70977 -23.10000 -21.42618 -20.51845 -18.84053 -18.11255 -16.77493 -16.63148 -16.19337 -15.88750 -15.46727 -14.90737 -14.63685 -14.00308 -13.67166 -13.50224 -13.21823 -12.78181 -12.55831 -12.33595 -12.24083 -11.87406 -11.69235 -11.54898 -11.40473 -11.34066 -11.04483 -10.65760 -10.55847 -10.36012 -8.22120 -6.31217 0.96844 1.38040 1.39607 1.47017 1.67817 1.93955 2.38253 3.12324 3.49780 3.62652 3.71621 3.76395 3.98996 4.27541 4.39016 4.46019 4.48644 4.56156 4.74436 4.85721 4.91846 5.07356 5.13345 5.25587 5.31504 5.39669 5.50818 5.53680 5.67625 5.80362 6.06295 6.21737 6.84382 7.37783 7.76116 8.88942 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.028280 B = 0.008376 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.865397 B = 3342.029323 C = 3889.573745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.955 3.045 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.532 4.532 8 H 0.060 0.940 9 C 0.039 3.961 10 C -0.084 4.084 11 H 0.057 0.943 12 C -0.108 4.108 13 C -0.112 4.112 14 C -0.116 4.116 15 C 0.129 3.871 16 H 0.111 0.889 17 N -0.455 5.455 18 C 0.160 3.840 19 N -0.346 5.346 20 N -0.346 5.346 21 C 0.153 3.847 22 H 0.262 0.738 23 H -0.022 1.022 24 H 0.002 0.998 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.093 0.907 28 H 0.071 0.929 29 H 0.086 0.914 30 H 0.091 0.909 31 H 0.242 0.758 32 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.050 -10.934 5.452 13.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.212 1.212 6 H -0.188 1.188 7 C -0.570 4.570 8 H 0.078 0.922 9 C 0.002 3.998 10 C -0.104 4.104 11 H 0.076 0.924 12 C -0.146 4.146 13 C -0.149 4.149 14 C -0.154 4.154 15 C 0.026 3.974 16 H 0.129 0.871 17 N -0.144 5.144 18 C -0.129 4.129 19 N -0.185 5.185 20 N -0.185 5.185 21 C -0.136 4.136 22 H 0.071 0.929 23 H -0.003 1.003 24 H 0.021 0.979 25 H 0.087 0.913 26 H 0.073 0.927 27 H 0.112 0.888 28 H 0.090 0.910 29 H 0.105 0.895 30 H 0.110 0.890 31 H 0.258 0.742 32 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 4.899 -11.315 4.039 12.975 hybrid contribution -0.095 1.887 0.995 2.136 sum 4.805 -9.428 5.034 11.718 Atomic orbital electron populations 1.70061 1.07607 1.27651 1.51828 1.25877 0.95656 1.03021 0.95064 0.85654 0.78410 0.78872 0.79083 1.19861 1.21176 1.18801 1.21562 0.93395 0.92070 1.49969 0.92226 1.19042 0.93710 0.92587 0.94500 1.22062 0.97057 0.92356 0.98903 0.92450 1.22045 0.99574 0.98172 0.94839 1.22299 1.02575 0.93371 0.96700 1.22836 1.00010 0.97006 0.95562 1.22862 1.03142 0.95108 0.76266 0.87081 1.46690 1.06521 1.46962 1.14183 1.26821 0.96719 1.01033 0.88307 1.74095 1.03730 1.21161 1.19517 1.74089 1.03889 1.20761 1.19801 1.27009 0.96749 1.01607 0.88245 0.92932 1.00346 0.97924 0.91273 0.92714 0.88845 0.91014 0.89511 0.89031 0.74167 0.74395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.95 13.29 21.45 0.28 -54.66 16 2 C 0.00 0.10 5.46 84.66 0.46 0.56 16 3 Si 0.95 43.22 29.54 68.60 2.03 45.25 16 4 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 5 H -0.29 -12.84 7.11 99.48 0.71 -12.14 16 6 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 7 C -0.53 -28.36 8.43 25.60 0.22 -28.14 16 8 H 0.06 3.05 7.69 -2.91 -0.02 3.03 16 9 C 0.04 1.84 4.12 29.85 0.12 1.96 16 10 C -0.08 -2.90 2.56 -10.07 -0.03 -2.92 16 11 H 0.06 2.09 7.40 -2.39 -0.02 2.07 16 12 C -0.11 -3.12 6.07 31.32 0.19 -2.93 16 13 C -0.11 -2.23 6.83 31.67 0.22 -2.01 16 14 C -0.12 -2.19 6.47 31.88 0.21 -1.99 16 15 C 0.13 3.44 3.17 46.07 0.15 3.59 16 16 H 0.11 2.97 7.83 -2.39 -0.02 2.95 16 17 N -0.46 -13.20 2.70 -505.31 -1.37 -14.57 16 18 C 0.16 4.70 11.16 180.11 2.01 6.71 16 19 N -0.35 -12.56 12.21 -59.99 -0.73 -13.29 16 20 N -0.35 -12.79 12.21 -59.99 -0.73 -13.53 16 21 C 0.15 4.72 12.73 180.11 2.29 7.01 16 22 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 23 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 24 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 25 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.05 1.89 7.38 -2.39 -0.02 1.88 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.09 1.46 7.46 -2.39 -0.02 1.44 16 30 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.24 5.10 8.01 -2.91 -0.02 5.08 16 32 H 0.24 5.60 8.06 -2.91 -0.02 5.58 16 Total: -1.00 -68.61 269.27 6.41 -62.20 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 1.09 Total: 6.77 kcal Atomic # 6 Polarization: -24.00 SS G_CDS: 5.84 Total: -18.16 kcal Atomic # 7 Polarization: -93.50 SS G_CDS: -2.55 Total: -96.05 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -68.61 6.41 -62.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260581681.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.603 kcal (2) G-P(sol) polarization free energy of solvation -68.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds