Wall clock time and date at job start Mon Mar 30 2020 02:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.36008 * 116.99960 * 2 1 4 4 C 1.38512 * 120.07921 * 359.97438 * 3 2 1 5 5 C 1.38286 * 120.01853 * 180.02562 * 4 3 2 6 6 C 1.38255 * 120.17586 * 359.97438 * 5 4 3 7 7 C 1.50701 * 119.91434 * 179.97438 * 6 5 4 8 8 H 1.09002 * 109.47092 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47636 * 300.00239 * 7 6 5 10 10 C 1.50703 * 109.47089 * 60.00666 * 7 6 5 11 11 H 1.07998 * 119.99725 * 359.97438 * 10 7 6 12 12 C 1.37878 * 120.00129 * 180.02562 * 10 7 6 13 13 N 1.31517 * 119.99745 * 359.97438 * 12 10 7 14 14 Si 1.86800 * 120.00132 * 179.97438 * 12 10 7 15 15 H 1.48498 * 109.46962 * 359.97438 * 14 12 10 16 16 H 1.48505 * 109.46820 * 119.99370 * 14 12 10 17 17 H 1.48494 * 109.47128 * 239.99779 * 14 12 10 18 18 C 1.38222 * 120.16706 * 0.02661 * 6 5 4 19 19 C 1.38725 * 119.97550 * 359.67382 * 18 6 5 20 20 N 1.39968 * 120.08910 * 180.29741 * 19 18 6 21 21 H 1.09001 * 109.47103 * 60.00643 * 1 2 3 22 22 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 23 23 H 1.09000 * 109.47187 * 300.00203 * 1 2 3 24 24 H 1.07995 * 119.99121 * 0.02610 * 4 3 2 25 25 H 1.07988 * 119.90935 * 179.97438 * 5 4 3 26 26 H 1.09002 * 109.47011 * 59.99791 * 9 7 6 27 27 H 1.08996 * 109.47901 * 180.02562 * 9 7 6 28 28 H 1.09007 * 109.47384 * 300.00498 * 9 7 6 29 29 H 0.97003 * 119.99860 * 180.02562 * 13 12 10 30 30 H 1.08001 * 120.01472 * 179.97438 * 18 6 5 31 31 H 0.96999 * 119.99975 * 180.29498 * 20 19 18 32 32 H 0.96995 * 120.00112 * 0.30390 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0465 1.2118 0.0000 4 6 1.2937 2.3745 -0.0005 5 6 1.9228 3.6060 -0.0011 6 6 3.3033 3.6812 -0.0005 7 6 3.9828 5.0263 -0.0017 8 1 5.0639 4.8873 -0.0015 9 6 3.5695 5.8054 -1.2519 10 6 3.5747 5.7963 1.2278 11 1 2.8914 5.3558 1.9387 12 6 4.0729 7.0635 1.4446 13 7 4.9047 7.6001 0.5786 14 14 3.5666 8.0182 2.9683 15 1 2.6286 7.1986 3.7769 16 1 4.7712 8.3350 3.7769 17 1 2.8970 9.2798 2.5622 18 6 4.0618 2.5257 0.0000 19 6 3.4376 1.2868 0.0068 20 7 4.2034 0.1152 0.0136 21 1 -0.3633 0.5137 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 0.2152 2.3193 -0.0005 25 1 1.3342 4.5114 -0.0019 26 1 2.4884 5.9445 -1.2525 27 1 4.0613 6.7782 -1.2530 28 1 3.8647 5.2485 -2.1412 29 1 5.2555 8.4914 0.7313 30 1 5.1401 2.5872 0.0000 31 1 3.7656 -0.7503 0.0141 32 1 5.1719 0.1689 0.0180 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260586245.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:52 Heat of formation + Delta-G solvation = -42.311749 kcal Electronic energy + Delta-G solvation = -14789.539483 eV Core-core repulsion = 12328.069936 eV Total energy + Delta-G solvation = -2461.469546 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.00449 -38.62579 -36.38390 -34.84728 -32.75067 -30.20754 -29.26217 -27.55861 -27.14904 -23.90696 -23.09397 -21.17110 -18.86661 -18.38387 -17.74582 -17.12709 -16.48326 -16.43508 -15.80032 -15.14933 -14.95203 -14.60468 -14.24394 -13.82522 -13.41504 -13.21610 -12.84186 -12.80809 -12.63682 -12.23101 -12.13518 -11.84270 -11.73929 -11.27909 -11.24531 -10.83242 -10.43974 -9.17403 -8.10896 -7.97814 -6.19748 0.64268 0.85525 1.41599 1.43603 1.55328 2.45403 2.51270 3.09094 3.13279 3.22056 4.04239 4.27527 4.45904 4.48945 4.58947 4.69988 4.79044 4.84826 4.90369 5.05030 5.10476 5.31622 5.40586 5.58557 5.60085 5.76128 5.97326 6.13108 6.21501 6.38835 6.44070 6.84699 6.89468 7.14985 7.47639 8.98261 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038328 B = 0.007194 C = 0.006808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.352754 B = 3891.186793 C = 4111.520516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.334 6.334 3 C 0.021 3.979 4 C -0.157 4.157 5 C -0.147 4.147 6 C -0.042 4.042 7 C 0.073 3.927 8 H 0.003 0.997 9 C -0.120 4.120 10 C -0.517 4.517 11 H 0.050 0.950 12 C 0.012 3.988 13 N -0.918 5.918 14 Si 0.954 3.046 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.278 1.278 18 C -0.188 4.188 19 C 0.189 3.811 20 N -0.867 5.867 21 H 0.057 0.943 22 H 0.121 0.879 23 H 0.054 0.946 24 H 0.146 0.854 25 H 0.111 0.889 26 H 0.032 0.968 27 H 0.058 0.942 28 H 0.023 0.977 29 H 0.261 0.739 30 H 0.121 0.879 31 H 0.406 0.594 32 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.679 -13.624 -1.458 15.243 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.249 6.249 3 C -0.027 4.027 4 C -0.176 4.176 5 C -0.167 4.167 6 C -0.043 4.043 7 C 0.054 3.946 8 H 0.021 0.979 9 C -0.178 4.178 10 C -0.555 4.555 11 H 0.069 0.931 12 C -0.186 4.186 13 N -0.558 5.558 14 Si 0.780 3.220 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.204 1.204 18 C -0.212 4.212 19 C 0.085 3.915 20 N -0.410 5.410 21 H 0.076 0.924 22 H 0.139 0.861 23 H 0.073 0.927 24 H 0.163 0.837 25 H 0.129 0.871 26 H 0.051 0.949 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.070 0.930 30 H 0.139 0.861 31 H 0.235 0.765 32 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -6.533 -13.628 -1.488 15.186 hybrid contribution 0.057 0.805 0.708 1.073 sum -6.477 -12.823 -0.780 14.387 Atomic orbital electron populations 1.23207 0.77184 1.05064 1.01612 1.85873 1.22704 1.25884 1.90466 1.18339 0.90385 0.85146 1.08802 1.21154 1.00288 0.91214 1.04986 1.20603 0.94029 0.96990 1.05091 1.20104 0.94142 0.95241 0.94812 1.17714 0.93694 0.88746 0.94411 0.97898 1.21612 0.99160 1.01278 0.95740 1.21432 1.27236 1.00296 1.06533 0.93146 1.25720 0.95097 0.98485 0.99272 1.70025 1.32658 1.16344 1.36792 0.85566 0.78102 0.78543 0.79833 1.19392 1.20653 1.20391 1.20440 0.99513 0.90195 1.11006 1.17116 0.87965 0.87961 0.98443 1.42129 1.08294 1.04634 1.85898 0.92443 0.86113 0.92716 0.83674 0.87100 0.94905 0.92275 0.95798 0.92972 0.86125 0.76509 0.76682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.81 113.37 1.11 1.56 16 2 O -0.33 -9.22 9.74 -93.65 -0.91 -10.13 16 3 C 0.02 0.71 6.70 22.59 0.15 0.86 16 4 C -0.16 -5.38 9.04 22.35 0.20 -5.18 16 5 C -0.15 -6.07 8.70 22.29 0.19 -5.87 16 6 C -0.04 -1.91 4.74 -19.86 -0.09 -2.00 16 7 C 0.07 3.82 2.48 -12.29 -0.03 3.79 16 8 H 0.00 0.16 7.87 -2.39 -0.02 0.14 16 9 C -0.12 -6.04 8.78 71.98 0.63 -5.41 16 10 C -0.52 -29.13 8.24 25.60 0.21 -28.92 16 11 H 0.05 2.85 7.60 -2.91 -0.02 2.83 16 12 C 0.01 0.70 5.30 84.65 0.45 1.15 16 13 N -0.92 -53.55 11.32 21.45 0.24 -53.31 16 14 Si 0.95 44.24 29.54 68.60 2.03 46.27 16 15 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 16 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 17 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 18 C -0.19 -7.57 9.51 22.38 0.21 -7.36 16 19 C 0.19 6.55 6.77 38.22 0.26 6.81 16 20 N -0.87 -22.68 9.09 -51.05 -0.46 -23.14 16 21 H 0.06 1.01 7.66 -2.39 -0.02 1.00 16 22 H 0.12 1.53 8.14 -2.38 -0.02 1.52 16 23 H 0.05 1.00 7.66 -2.39 -0.02 0.98 16 24 H 0.15 3.98 6.30 -2.91 -0.02 3.96 16 25 H 0.11 4.68 7.56 -2.92 -0.02 4.66 16 26 H 0.03 1.56 7.38 -2.39 -0.02 1.54 16 27 H 0.06 3.25 6.07 -2.39 -0.01 3.23 16 28 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 30 H 0.12 4.66 7.94 -2.91 -0.02 4.63 16 31 H 0.41 9.20 8.19 -92.71 -0.76 8.44 16 32 H 0.40 8.97 8.85 -92.71 -0.82 8.15 16 Total: -1.00 -64.30 268.76 3.75 -60.55 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -0.44 Total: 20.34 kcal Atomic # 6 Polarization: -43.88 SS G_CDS: 3.30 Total: -40.58 kcal Atomic # 7 Polarization: -76.23 SS G_CDS: -0.22 Total: -76.45 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.91 Total: -10.13 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -64.30 3.75 -60.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260586245.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.235 kcal (2) G-P(sol) polarization free energy of solvation -64.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds