Wall clock time and date at job start Mon Mar 30 2020 03:11:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99746 * 2 1 4 4 H 1.48507 * 109.46694 * 240.00067 * 3 2 1 5 5 H 1.48496 * 109.47579 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47106 * 120.00157 * 3 2 1 7 7 C 1.37871 * 120.00066 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00042 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99891 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.47019 * 179.97438 * 9 7 2 11 11 C 1.35311 * 126.12159 * 85.02904 * 10 9 7 12 12 C 1.39872 * 107.91683 * 179.97438 * 11 10 9 13 13 N 1.30828 * 108.20306 * 359.97438 * 12 11 10 14 14 N 1.34940 * 126.13005 * 264.71648 * 10 9 7 15 15 C 1.46503 * 126.03754 * 0.03469 * 14 10 9 16 16 H 1.09003 * 110.28398 * 357.87309 * 15 14 10 17 17 C 1.54261 * 110.32456 * 119.99925 * 15 14 10 18 18 C 1.54375 * 105.05979 * 118.89821 * 17 15 14 19 19 N 1.48557 * 104.59569 * 23.85096 * 18 17 15 20 20 C 1.48558 * 104.22547 * 320.51864 * 19 18 17 21 21 H 0.97000 * 119.99903 * 0.02562 * 1 2 3 22 22 H 1.08998 * 109.46847 * 60.00330 * 9 7 2 23 23 H 1.08993 * 109.47470 * 299.99777 * 9 7 2 24 24 H 1.08003 * 126.04448 * 359.93452 * 11 10 9 25 25 H 1.08009 * 125.89772 * 180.02562 * 12 11 10 26 26 H 1.08997 * 110.32463 * 237.79191 * 17 15 14 27 27 H 1.08998 * 110.32158 * 359.90250 * 17 15 14 28 28 H 1.08997 * 110.41635 * 142.63321 * 18 17 15 29 29 H 1.09004 * 110.41238 * 265.07538 * 18 17 15 30 30 H 1.00899 * 111.00759 * 200.95927 * 19 18 17 31 31 H 1.08997 * 110.41338 * 280.70225 * 20 19 18 32 32 H 1.09001 * 110.41128 * 158.25622 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2842 2.7465 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 6 2.2304 -3.6446 0.0015 11 6 2.8216 -4.1888 1.0901 12 6 3.6554 -5.2239 0.6547 13 7 3.5675 -5.2988 -0.6485 14 7 2.6703 -4.3150 -1.0838 15 6 2.2806 -4.0577 -2.4724 16 1 1.5417 -3.2574 -2.5154 17 6 3.5181 -3.6902 -3.3169 18 6 3.6018 -4.7842 -4.4029 19 7 2.2146 -5.3026 -4.5198 20 6 1.7207 -5.3427 -3.1193 21 1 -0.4850 0.8401 -0.0004 22 1 0.6241 -2.5574 -0.8880 23 1 0.6248 -2.5563 0.8919 24 1 2.6759 -3.8784 2.1143 25 1 4.2658 -5.8534 1.2854 26 1 3.3859 -2.7105 -3.7759 27 1 4.4152 -3.6997 -2.6979 28 1 3.9284 -4.3553 -5.3503 29 1 4.2796 -5.5788 -4.0907 30 1 2.2061 -6.2233 -4.9326 31 1 2.1040 -6.2247 -2.6061 32 1 0.6309 -5.3342 -3.1001 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260602409.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:11:30 Heat of formation + Delta-G solvation = 73.158700 kcal Electronic energy + Delta-G solvation = -15060.181521 eV Core-core repulsion = 12636.011900 eV Total energy + Delta-G solvation = -2424.169621 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.56242 -37.93705 -33.51632 -32.17948 -30.69697 -29.23569 -27.46562 -26.93584 -23.19462 -21.97775 -21.32605 -19.80479 -18.61976 -16.68084 -16.38051 -15.88255 -14.89461 -14.40811 -14.15259 -13.62313 -13.22075 -13.04131 -12.37656 -12.25968 -12.04405 -11.87199 -11.43197 -11.32260 -11.16061 -10.89626 -10.77834 -10.48870 -10.04607 -9.73839 -9.59555 -8.63270 -8.51973 -8.43367 -7.64323 -6.14279 -4.19054 2.70016 3.13601 3.27583 3.32002 3.35204 3.65047 4.37224 4.39905 4.67974 4.91356 5.20836 5.22303 5.31487 5.43617 5.64477 5.75457 5.87254 5.97357 6.01364 6.07322 6.25763 6.36887 6.62318 6.70015 6.79557 7.24289 7.32766 7.43189 7.46996 7.80779 7.85643 8.18470 8.51152 8.84594 9.45750 10.95470 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026501 B = 0.009063 C = 0.007770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.295155 B = 3088.692760 C = 3602.945922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.515 4.515 8 H 0.058 0.942 9 C 0.071 3.929 10 C 0.143 3.857 11 C -0.301 4.301 12 C 0.040 3.960 13 N -0.330 5.330 14 N -0.369 5.369 15 C 0.162 3.838 16 H 0.121 0.879 17 C -0.129 4.129 18 C 0.039 3.961 19 N -0.663 5.663 20 C 0.030 3.970 21 H 0.265 0.735 22 H 0.029 0.971 23 H 0.047 0.953 24 H 0.138 0.862 25 H 0.170 0.830 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.337 0.663 31 H 0.056 0.944 32 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.432 -8.509 -5.046 10.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.140 4.140 3 Si 0.725 3.275 4 H -0.202 1.202 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.554 4.554 8 H 0.076 0.924 9 C 0.033 3.967 10 C 0.015 3.985 11 C -0.330 4.330 12 C -0.145 4.145 13 N -0.151 5.151 14 N -0.152 5.152 15 C 0.059 3.941 16 H 0.138 0.862 17 C -0.167 4.167 18 C -0.090 4.090 19 N -0.291 5.291 20 C -0.101 4.101 21 H 0.074 0.926 22 H 0.048 0.952 23 H 0.065 0.935 24 H 0.156 0.844 25 H 0.187 0.813 26 H 0.101 0.899 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.151 0.849 31 H 0.074 0.926 32 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.294 -8.354 -6.460 11.400 hybrid contribution 0.732 0.584 1.268 1.576 sum 5.026 -7.771 -5.192 10.611 Atomic orbital electron populations 1.69933 1.06007 1.27233 1.49815 1.24973 0.94896 0.99288 0.94861 0.86552 0.79529 0.82561 0.78823 1.20158 1.21112 1.20043 1.20905 0.93059 0.89469 1.51954 0.92416 1.18077 0.91612 0.87969 0.99056 1.22131 0.96502 0.93878 0.85941 1.21111 1.08449 1.04049 0.99401 1.23616 0.99727 0.98781 0.92398 1.77034 1.13116 1.12099 1.12845 1.48532 1.34600 1.26382 1.05706 1.21881 0.97308 0.97940 0.77004 0.86156 1.22621 0.98182 0.99371 0.96548 1.22891 0.89962 0.97123 0.99075 1.63716 1.19092 1.29107 1.17219 1.23230 1.00780 0.97227 0.88813 0.92566 0.95243 0.93538 0.84440 0.81267 0.89880 0.90247 0.90092 0.93912 0.84853 0.92579 0.89538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.90 21.11 29.54 -169.99 -5.02 16.08 16 4 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -14.03 9.09 -34.44 -0.31 -14.34 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 9 C 0.07 1.79 5.17 -29.03 -0.15 1.64 16 10 C 0.14 3.19 6.12 -82.27 -0.50 2.69 16 11 C -0.30 -6.20 10.72 -40.01 -0.43 -6.63 16 12 C 0.04 0.74 12.02 -17.37 -0.21 0.53 16 13 N -0.33 -6.49 12.04 30.63 0.37 -6.13 16 14 N -0.37 -7.51 3.25 -49.36 -0.16 -7.68 16 15 C 0.16 2.91 3.84 -66.55 -0.26 2.66 16 16 H 0.12 2.34 6.61 -51.93 -0.34 2.00 16 17 C -0.13 -2.07 6.75 -25.35 -0.17 -2.24 16 18 C 0.04 0.52 7.47 -2.19 -0.02 0.50 16 19 N -0.66 -8.82 7.62 -109.67 -0.84 -9.65 16 20 C 0.03 0.45 7.16 -2.18 -0.02 0.44 16 21 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 22 H 0.03 0.76 6.86 -51.93 -0.36 0.40 16 23 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.14 2.67 8.06 -52.48 -0.42 2.24 16 25 H 0.17 2.43 8.06 -52.48 -0.42 2.00 16 26 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 27 H 0.08 1.39 7.91 -51.93 -0.41 0.98 16 28 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.34 3.68 8.92 -39.29 -0.35 3.32 16 31 H 0.06 0.90 7.67 -51.93 -0.40 0.50 16 32 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 271.72 15.07 4.09 4.09 Total: -1.00 -29.37 271.72 -7.34 -36.71 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -4.36 Total: 4.38 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -2.16 Total: -13.16 kcal Atomic # 7 Polarization: -48.22 SS G_CDS: 0.11 Total: -48.11 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.09 Total: 4.09 kcal Total: -29.37 -7.34 -36.71 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260602409.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.870 kcal (2) G-P(sol) polarization free energy of solvation -29.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds