Wall clock time and date at job start Mon Mar 30 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99918 * 2 1 4 4 H 1.48501 * 109.46936 * 239.99960 * 3 2 1 5 5 H 1.48506 * 109.47023 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47438 * 119.99503 * 3 2 1 7 7 C 1.37875 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00214 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47387 * 180.02562 * 9 7 2 11 11 C 1.39868 * 126.03767 * 90.02432 * 10 9 7 12 12 N 1.30844 * 108.19764 * 179.97438 * 11 10 9 13 13 N 1.40078 * 108.20890 * 0.02562 * 12 11 10 14 14 C 1.46495 * 126.04021 * 179.97438 * 13 12 11 15 15 H 1.08996 * 109.88103 * 184.60019 * 14 13 12 16 16 C 1.54317 * 109.88993 * 305.80273 * 14 13 12 17 17 C 1.55137 * 103.02109 * 97.11883 * 16 14 13 18 18 C 1.54911 * 101.65410 * 35.65423 * 17 16 14 19 19 N 1.47449 * 109.88914 * 63.57106 * 14 13 12 20 20 C 1.34957 * 107.92650 * 0.02562 * 13 12 11 21 21 H 0.97003 * 120.00468 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47045 * 60.00280 * 9 7 2 23 23 H 1.09005 * 109.47085 * 300.00306 * 9 7 2 24 24 H 1.07995 * 125.89923 * 0.21784 * 11 10 9 25 25 H 1.09001 * 110.70651 * 215.50405 * 16 14 13 26 26 H 1.09001 * 110.70298 * 338.73417 * 16 14 13 27 27 H 1.08997 * 110.99304 * 277.56327 * 17 16 14 28 28 H 1.08995 * 110.99444 * 153.74760 * 17 16 14 29 29 H 1.08993 * 110.37563 * 204.10247 * 18 17 16 30 30 H 1.09001 * 110.37130 * 81.76024 * 18 17 16 31 31 H 1.00899 * 111.00231 * 117.33763 * 19 14 13 32 32 H 1.07995 * 126.12756 * 180.02562 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2304 -3.6446 0.0027 11 6 2.7647 -4.2694 1.1343 12 7 3.5738 -5.2167 0.7343 13 7 3.5803 -5.2243 -0.6664 14 6 4.3540 -6.1293 -1.5199 15 1 4.2255 -5.8524 -2.5662 16 6 5.8472 -6.0648 -1.1358 17 6 6.0186 -7.2849 -0.1930 18 6 5.0610 -8.3169 -0.8395 19 7 3.9087 -7.5193 -1.3106 20 6 2.7488 -4.2497 -1.0910 21 1 -0.4851 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5563 0.8920 24 1 2.5443 -4.0164 2.1608 25 1 6.4772 -6.1689 -2.0192 26 1 6.0700 -5.1367 -0.6094 27 1 5.7032 -7.0418 0.8216 28 1 7.0470 -7.6459 -0.2045 29 1 4.7383 -9.0500 -0.1004 30 1 5.5482 -8.8124 -1.6793 31 1 3.5230 -7.9070 -2.1584 32 1 2.5343 -3.9990 -2.1193 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260715681.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:14 Heat of formation + Delta-G solvation = 78.752089 kcal Electronic energy + Delta-G solvation = -14643.587673 eV Core-core repulsion = 12219.660600 eV Total energy + Delta-G solvation = -2423.927073 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.42296 -38.18856 -33.28384 -31.70809 -30.44772 -30.21419 -28.03681 -26.13184 -22.84916 -22.00869 -21.27321 -19.63202 -19.04920 -16.91004 -16.46684 -16.13461 -14.99754 -14.41176 -14.19906 -13.47053 -13.12809 -12.98110 -12.31504 -12.24670 -12.16245 -11.99916 -11.32521 -11.29018 -11.08917 -10.96522 -10.74503 -10.50938 -9.92036 -9.40374 -9.28461 -8.83402 -8.55940 -8.29454 -7.28909 -5.91009 -3.93904 2.66522 3.11766 3.38051 3.42070 3.44965 3.86920 4.12880 4.38162 4.54941 4.66911 4.70646 5.01185 5.26980 5.33405 5.42233 5.65975 5.70133 5.74678 5.88063 5.93454 6.17471 6.46328 6.64039 6.72348 7.04469 7.13586 7.56095 7.71046 7.86905 7.98066 8.06183 8.52029 8.60809 9.11669 9.69086 11.18117 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.054604 B = 0.005923 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.660781 B = 4726.583302 C = 4897.500263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.279 1.279 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.505 4.505 8 H 0.053 0.947 9 C 0.084 3.916 10 C -0.176 4.176 11 C 0.038 3.962 12 N -0.297 5.297 13 N -0.371 5.371 14 C 0.325 3.675 15 H 0.092 0.908 16 C -0.143 4.143 17 C -0.126 4.126 18 C 0.054 3.946 19 N -0.686 5.686 20 C 0.022 3.978 21 H 0.260 0.740 22 H 0.022 0.978 23 H 0.025 0.975 24 H 0.172 0.828 25 H 0.077 0.923 26 H 0.086 0.914 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.079 0.921 30 H 0.043 0.957 31 H 0.346 0.654 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.131 -13.786 -4.320 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.719 3.281 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.544 4.544 8 H 0.071 0.929 9 C 0.046 3.954 10 C -0.187 4.187 11 C -0.148 4.148 12 N -0.118 5.118 13 N -0.158 5.158 14 C 0.132 3.868 15 H 0.110 0.890 16 C -0.182 4.182 17 C -0.164 4.164 18 C -0.074 4.074 19 N -0.318 5.318 20 C -0.121 4.121 21 H 0.070 0.930 22 H 0.040 0.960 23 H 0.044 0.956 24 H 0.189 0.811 25 H 0.096 0.904 26 H 0.104 0.896 27 H 0.105 0.895 28 H 0.090 0.910 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.165 0.835 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 10.555 -14.593 -3.443 18.336 hybrid contribution 0.293 1.585 -1.149 1.980 sum 10.848 -13.008 -4.592 17.549 Atomic orbital electron populations 1.69950 1.05960 1.26612 1.51211 1.25006 0.94814 0.99026 0.95602 0.86669 0.79552 0.83279 0.78551 1.20425 1.21361 1.20300 1.21155 0.92943 0.90372 1.49937 0.92861 1.17649 0.91670 0.88419 0.97646 1.20871 1.05063 1.02170 0.90614 1.23768 0.96600 0.94482 0.99974 1.77081 1.23317 1.22154 0.89280 1.48483 1.36504 1.26550 1.04297 1.21707 0.89402 0.84309 0.91369 0.89011 1.22984 0.94078 1.00937 1.00186 1.22702 0.98780 0.94209 1.00726 1.22770 0.89926 0.96001 0.98729 1.61042 1.32088 1.01679 1.37031 1.22140 0.96581 0.93340 0.99989 0.93002 0.96007 0.95634 0.81069 0.90443 0.89579 0.89473 0.90976 0.90263 0.93842 0.83546 0.82267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 6 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 7 C -0.51 -14.46 9.09 -34.44 -0.31 -14.78 16 8 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 9 C 0.08 2.23 5.46 -29.03 -0.16 2.08 16 10 C -0.18 -4.03 5.29 -105.05 -0.56 -4.58 16 11 C 0.04 0.81 11.96 -17.36 -0.21 0.60 16 12 N -0.30 -5.97 12.43 30.62 0.38 -5.59 16 13 N -0.37 -6.70 3.49 -56.82 -0.20 -6.90 16 14 C 0.33 4.35 4.30 -125.92 -0.54 3.81 16 15 H 0.09 1.01 8.08 -51.93 -0.42 0.59 16 16 C -0.14 -1.67 6.52 -24.91 -0.16 -1.83 16 17 C -0.13 -1.38 7.08 -24.59 -0.17 -1.55 16 18 C 0.05 0.55 7.57 -2.30 -0.02 0.53 16 19 N -0.69 -8.41 7.25 -107.10 -0.78 -9.19 16 20 C 0.02 0.44 11.37 -17.22 -0.20 0.24 16 21 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 22 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 23 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.17 3.32 8.06 -52.49 -0.42 2.90 16 25 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.09 1.21 8.03 -51.93 -0.42 0.79 16 27 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.35 3.36 8.91 -39.29 -0.35 3.01 16 32 H 0.16 2.80 8.06 -52.49 -0.42 2.37 16 LS Contribution 275.60 15.07 4.15 4.15 Total: -1.00 -32.56 275.60 -7.68 -40.24 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.53 Total: 0.63 kcal Atomic # 6 Polarization: -11.54 SS G_CDS: -2.42 Total: -13.96 kcal Atomic # 7 Polarization: -48.06 SS G_CDS: 0.14 Total: -47.92 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -32.56 -7.68 -40.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260715681.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.990 kcal (2) G-P(sol) polarization free energy of solvation -32.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds