Wall clock time and date at job start Mon Mar 30 2020 03:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99918 * 2 1 4 4 H 1.48501 * 109.46936 * 239.99960 * 3 2 1 5 5 H 1.48506 * 109.47023 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47438 * 119.99503 * 3 2 1 7 7 C 1.37875 * 120.00205 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00214 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00004 * 359.97438 * 7 2 1 10 10 C 1.50701 * 109.47387 * 180.02562 * 9 7 2 11 11 C 1.39868 * 126.03767 * 90.02432 * 10 9 7 12 12 N 1.30844 * 108.19764 * 179.97438 * 11 10 9 13 13 N 1.40078 * 108.20890 * 0.02562 * 12 11 10 14 14 C 1.46495 * 126.04021 * 179.97438 * 13 12 11 15 15 H 1.08996 * 109.88103 * 184.60019 * 14 13 12 16 16 C 1.54317 * 109.88993 * 305.80273 * 14 13 12 17 17 C 1.55137 * 103.02109 * 97.11883 * 16 14 13 18 18 C 1.54911 * 101.65410 * 35.65423 * 17 16 14 19 19 N 1.47449 * 109.88914 * 63.57106 * 14 13 12 20 20 C 1.34957 * 107.92650 * 0.02562 * 13 12 11 21 21 H 0.97003 * 120.00468 * 0.02562 * 1 2 3 22 22 H 1.09002 * 109.47045 * 60.00280 * 9 7 2 23 23 H 1.09005 * 109.47085 * 300.00306 * 9 7 2 24 24 H 1.07995 * 125.89923 * 0.21784 * 11 10 9 25 25 H 1.09001 * 110.70651 * 215.50405 * 16 14 13 26 26 H 1.09001 * 110.70298 * 338.73417 * 16 14 13 27 27 H 1.08997 * 110.99304 * 277.56327 * 17 16 14 28 28 H 1.08995 * 110.99444 * 153.74760 * 17 16 14 29 29 H 1.08993 * 110.37563 * 204.10247 * 18 17 16 30 30 H 1.09001 * 110.37130 * 81.76024 * 18 17 16 31 31 H 1.00899 * 111.00231 * 117.33763 * 19 14 13 32 32 H 1.07995 * 126.12756 * 180.02562 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 6 2.2304 -3.6446 0.0027 11 6 2.7647 -4.2694 1.1343 12 7 3.5738 -5.2167 0.7343 13 7 3.5803 -5.2243 -0.6664 14 6 4.3540 -6.1293 -1.5199 15 1 4.2255 -5.8524 -2.5662 16 6 5.8472 -6.0648 -1.1358 17 6 6.0186 -7.2849 -0.1930 18 6 5.0610 -8.3169 -0.8395 19 7 3.9087 -7.5193 -1.3106 20 6 2.7488 -4.2497 -1.0910 21 1 -0.4851 0.8400 -0.0004 22 1 0.6241 -2.5575 -0.8880 23 1 0.6247 -2.5563 0.8920 24 1 2.5443 -4.0164 2.1608 25 1 6.4772 -6.1689 -2.0192 26 1 6.0700 -5.1367 -0.6094 27 1 5.7032 -7.0418 0.8216 28 1 7.0470 -7.6459 -0.2045 29 1 4.7383 -9.0500 -0.1004 30 1 5.5482 -8.8124 -1.6793 31 1 3.5230 -7.9070 -2.1584 32 1 2.5343 -3.9990 -2.1193 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260715681.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:14 Heat of formation + Delta-G solvation = 56.197691 kcal Electronic energy + Delta-G solvation = -14644.565705 eV Core-core repulsion = 12219.660600 eV Total energy + Delta-G solvation = -2424.905105 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.92314 -39.20678 -35.37249 -33.21321 -32.09164 -31.29234 -29.36085 -27.86881 -24.80375 -23.35079 -22.12987 -21.11634 -20.52649 -18.40607 -17.99249 -17.60337 -16.48945 -16.06684 -15.47517 -14.86725 -14.43836 -14.22104 -14.02183 -13.90605 -13.70427 -13.12129 -13.02667 -12.69665 -12.45705 -12.37133 -12.18410 -11.87760 -11.78731 -11.48506 -11.14738 -10.50695 -10.13828 -9.68036 -8.99967 -8.09251 -6.22912 1.13328 1.42672 1.45624 1.53616 1.80289 2.13822 2.49460 3.17491 3.19575 3.41829 3.78365 3.80551 4.10476 4.19613 4.34256 4.51088 4.60123 4.81297 4.88210 4.93619 4.96246 5.07786 5.26732 5.28544 5.45523 5.67562 5.82210 5.85036 5.95349 6.27277 6.33835 6.54244 6.89794 7.01185 7.45017 8.97959 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.054604 B = 0.005923 C = 0.005716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 512.660781 B = 4726.583302 C = 4897.500263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.004 3.996 3 Si 0.962 3.038 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.272 1.272 7 C -0.522 4.522 8 H 0.049 0.951 9 C 0.097 3.903 10 C -0.217 4.217 11 C 0.023 3.977 12 N -0.302 5.302 13 N -0.358 5.358 14 C 0.309 3.691 15 H 0.123 0.877 16 C -0.138 4.138 17 C -0.126 4.126 18 C 0.058 3.942 19 N -0.705 5.705 20 C 0.036 3.964 21 H 0.264 0.736 22 H 0.001 0.999 23 H -0.003 1.003 24 H 0.177 0.823 25 H 0.114 0.886 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.362 0.638 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.147 -14.553 -5.845 19.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.194 4.194 3 Si 0.787 3.213 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.068 0.932 9 C 0.059 3.941 10 C -0.228 4.228 11 C -0.163 4.163 12 N -0.124 5.124 13 N -0.145 5.145 14 C 0.117 3.883 15 H 0.140 0.860 16 C -0.177 4.177 17 C -0.164 4.164 18 C -0.070 4.070 19 N -0.339 5.339 20 C -0.109 4.109 21 H 0.072 0.928 22 H 0.019 0.981 23 H 0.016 0.984 24 H 0.194 0.806 25 H 0.132 0.868 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.117 0.883 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.182 0.818 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 12.596 -15.411 -4.974 20.516 hybrid contribution -0.311 1.694 -0.721 1.867 sum 12.286 -13.717 -5.695 19.275 Atomic orbital electron populations 1.70078 1.07600 1.27742 1.51895 1.25887 0.95691 1.02857 0.94941 0.85554 0.78299 0.78515 0.78963 1.19290 1.20659 1.19683 1.21445 0.92890 0.91649 1.50052 0.93237 1.17326 0.91846 0.89763 0.95202 1.20595 1.06692 1.02880 0.92601 1.23852 0.97218 0.95020 1.00178 1.77042 1.22873 1.21630 0.90861 1.48997 1.35335 1.26266 1.03871 1.22278 0.89701 0.84428 0.91885 0.85985 1.22995 0.93355 0.99854 1.01493 1.22692 1.00547 0.94370 0.98787 1.22816 0.89079 0.95365 0.99711 1.60874 1.33397 1.01410 1.38205 1.22386 0.95432 0.92760 1.00296 0.92757 0.98087 0.98439 0.80584 0.86785 0.92328 0.92832 0.88282 0.90769 0.90416 0.81772 0.79873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.09 13.29 21.45 0.28 -56.81 16 2 C 0.00 0.22 5.46 84.65 0.46 0.68 16 3 Si 0.96 44.96 29.54 68.60 2.03 46.99 16 4 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 7 C -0.52 -30.49 9.09 25.60 0.23 -30.26 16 8 H 0.05 2.86 7.74 -2.91 -0.02 2.84 16 9 C 0.10 5.35 5.46 29.10 0.16 5.51 16 10 C -0.22 -10.11 5.29 -20.14 -0.11 -10.22 16 11 C 0.02 0.99 11.96 85.23 1.02 2.01 16 12 N -0.30 -12.12 12.43 -57.02 -0.71 -12.83 16 13 N -0.36 -12.48 3.49 -333.68 -1.17 -13.64 16 14 C 0.31 7.37 4.30 129.66 0.56 7.93 16 15 H 0.12 2.20 8.08 -2.39 -0.02 2.18 16 16 C -0.14 -2.83 6.52 31.77 0.21 -2.62 16 17 C -0.13 -2.44 7.08 31.98 0.23 -2.21 16 18 C 0.06 0.99 7.57 86.77 0.66 1.64 16 19 N -0.70 -15.27 7.25 -492.75 -3.57 -18.84 16 20 C 0.04 1.42 11.37 83.54 0.95 2.37 16 21 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 22 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 23 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 24 H 0.18 7.16 8.06 -2.91 -0.02 7.14 16 25 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.06 1.55 8.03 -2.39 -0.02 1.53 16 27 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 29 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.36 5.80 8.91 -89.69 -0.80 5.00 16 32 H 0.18 6.12 8.06 -2.91 -0.02 6.10 16 Total: -1.00 -71.43 275.60 1.54 -69.90 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 0.31 Total: 10.41 kcal Atomic # 6 Polarization: -29.53 SS G_CDS: 4.36 Total: -25.17 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -5.16 Total: -102.13 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -71.43 1.54 -69.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260715681.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.094 kcal (2) G-P(sol) polarization free energy of solvation -71.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds