Wall clock time and date at job start Mon Mar 30 2020 03:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.50703 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.39870 * 126.03921 * 269.69082 * 10 9 7 12 12 N 1.30835 * 108.20298 * 179.81689 * 11 10 9 13 13 N 1.40086 * 108.20259 * 0.44148 * 12 11 10 14 14 C 1.46505 * 126.03646 * 179.74149 * 13 12 11 15 15 H 1.08999 * 109.88034 * 65.66642 * 14 13 12 16 16 C 1.54320 * 109.88843 * 304.64092 * 14 13 12 17 17 C 1.55391 * 102.89958 * 218.41148 * 16 14 13 18 18 C 1.54897 * 101.74433 * 35.47829 * 17 16 14 19 19 N 1.47441 * 109.88691 * 186.70412 * 14 13 12 20 20 C 1.34941 * 107.92512 * 359.71606 * 13 12 11 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.08008 * 125.89648 * 359.97438 * 11 10 9 25 25 H 1.09006 * 110.70188 * 336.69472 * 16 14 13 26 26 H 1.09002 * 110.70721 * 99.92335 * 16 14 13 27 27 H 1.09009 * 110.86997 * 277.39013 * 17 16 14 28 28 H 1.09002 * 111.05881 * 153.65285 * 17 16 14 29 29 H 1.09007 * 110.37637 * 204.19592 * 18 17 16 30 30 H 1.09002 * 110.47014 * 81.89888 * 18 17 16 31 31 H 1.00905 * 111.00010 * 240.67897 * 19 14 13 32 32 H 1.08007 * 126.12799 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0005 11 6 2.7603 -4.2741 -1.1305 12 7 3.5743 -5.2168 -0.7297 13 7 3.5801 -5.2237 0.6711 14 6 4.3539 -6.1280 1.5253 15 1 5.4194 -5.9367 1.3984 16 6 4.0367 -7.5937 1.1613 17 6 4.0203 -8.2993 2.5457 18 6 3.4135 -7.1999 3.4527 19 7 3.9737 -5.9328 2.9365 20 6 2.7475 -4.2498 1.0946 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.5382 -4.0234 -2.1573 25 1 3.0618 -7.6688 0.6794 26 1 4.8163 -8.0097 0.5230 27 1 5.0313 -8.5539 2.8638 28 1 3.3846 -9.1846 2.5266 29 1 3.7149 -7.3537 4.4889 30 1 2.3266 -7.1954 3.3710 31 1 4.7661 -5.6370 3.4868 32 1 2.5323 -3.9986 2.1228 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260715685.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:17 Heat of formation + Delta-G solvation = 79.695166 kcal Electronic energy + Delta-G solvation = -14634.722232 eV Core-core repulsion = 12210.836053 eV Total energy + Delta-G solvation = -2423.886178 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.43141 -38.33279 -33.26855 -31.71217 -30.59456 -30.01249 -28.06990 -26.09844 -22.93907 -21.83333 -21.48130 -19.48052 -19.09706 -17.12635 -16.39653 -16.02149 -15.17446 -14.38384 -14.18963 -13.69875 -13.32834 -12.88292 -12.39106 -12.14532 -12.08153 -11.73839 -11.62114 -11.41952 -11.09317 -11.02075 -10.72249 -10.47196 -9.91354 -9.38452 -9.25871 -9.00743 -8.53849 -8.25782 -7.22936 -5.87316 -3.89727 2.75081 2.97638 3.40876 3.44422 3.47624 3.89656 3.92003 4.46437 4.58374 4.63151 4.69717 4.92724 5.19464 5.32988 5.45754 5.53826 5.60016 5.73272 5.76244 5.98282 6.04370 6.35656 6.68853 6.80080 7.02616 7.11095 7.60427 7.74323 7.91991 8.00117 8.10031 8.56952 8.62999 9.15782 9.72983 11.21852 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.047222 B = 0.006074 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.802305 B = 4608.802739 C = 4775.784254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.504 4.504 8 H 0.053 0.947 9 C 0.087 3.913 10 C -0.196 4.196 11 C 0.046 3.954 12 N -0.322 5.322 13 N -0.382 5.382 14 C 0.332 3.668 15 H 0.079 0.921 16 C -0.137 4.137 17 C -0.154 4.154 18 C 0.054 3.946 19 N -0.688 5.688 20 C 0.059 3.941 21 H 0.260 0.740 22 H 0.022 0.978 23 H 0.024 0.976 24 H 0.174 0.826 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.355 0.645 32 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.948 -14.966 6.171 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.542 4.542 8 H 0.071 0.929 9 C 0.048 3.952 10 C -0.206 4.206 11 C -0.139 4.139 12 N -0.144 5.144 13 N -0.168 5.168 14 C 0.138 3.862 15 H 0.096 0.904 16 C -0.177 4.177 17 C -0.193 4.193 18 C -0.075 4.075 19 N -0.320 5.320 20 C -0.085 4.085 21 H 0.069 0.931 22 H 0.040 0.960 23 H 0.042 0.958 24 H 0.191 0.809 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.089 0.911 28 H 0.098 0.902 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.174 0.826 32 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 8.055 -15.531 5.800 18.432 hybrid contribution 0.724 1.202 0.356 1.448 sum 8.779 -14.329 6.155 17.896 Atomic orbital electron populations 1.69951 1.05951 1.26540 1.51386 1.25003 0.94811 0.98994 0.95665 0.86676 0.79553 0.83312 0.78541 1.20349 1.21386 1.20407 1.21172 0.92943 0.90424 1.49698 0.92908 1.17611 0.91630 0.88393 0.97521 1.20900 1.06327 1.02731 0.90666 1.23745 0.95880 0.94228 1.00047 1.77077 1.24734 1.24380 0.88245 1.48585 1.36488 1.27636 1.04128 1.21596 0.92872 0.88295 0.83455 0.90358 1.23068 1.03953 0.93228 0.97423 1.23247 1.01572 0.99284 0.95232 1.22867 1.00777 0.86100 0.97743 1.60626 1.37013 1.32446 1.01877 1.22140 0.94763 0.91495 1.00103 0.93055 0.96016 0.95800 0.80896 0.89856 0.89995 0.91101 0.90176 0.90682 0.90000 0.82589 0.81676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 22.17 29.54 -169.99 -5.02 17.15 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 7 C -0.50 -14.67 9.09 -34.44 -0.31 -14.98 16 8 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 9 C 0.09 2.34 5.46 -29.03 -0.16 2.18 16 10 C -0.20 -4.57 5.29 -105.05 -0.56 -5.12 16 11 C 0.05 0.99 11.96 -17.37 -0.21 0.78 16 12 N -0.32 -6.52 12.45 30.63 0.38 -6.14 16 13 N -0.38 -7.08 3.64 -56.82 -0.21 -7.29 16 14 C 0.33 4.50 4.65 -125.91 -0.59 3.92 16 15 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 16 C -0.14 -1.57 6.55 -24.77 -0.16 -1.74 16 17 C -0.15 -1.27 7.08 -24.46 -0.17 -1.45 16 18 C 0.05 0.49 7.58 -2.30 -0.02 0.48 16 19 N -0.69 -7.94 6.13 -107.09 -0.66 -8.60 16 20 C 0.06 1.23 10.75 -17.23 -0.19 1.04 16 21 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 22 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.02 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.17 3.34 8.06 -52.48 -0.42 2.92 16 25 H 0.08 1.15 8.05 -51.93 -0.42 0.73 16 26 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.07 0.49 8.14 -51.92 -0.42 0.06 16 28 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.52 8.14 -51.92 -0.42 0.09 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.36 3.28 8.91 -39.29 -0.35 2.93 16 32 H 0.17 3.29 7.74 -52.48 -0.41 2.88 16 LS Contribution 274.17 15.07 4.13 4.13 Total: -1.00 -32.63 274.17 -7.61 -40.24 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.52 Total: 0.42 kcal Atomic # 6 Polarization: -10.91 SS G_CDS: -2.46 Total: -13.37 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.25 Total: -48.57 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -32.63 -7.61 -40.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260715685.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.936 kcal (2) G-P(sol) polarization free energy of solvation -32.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds