Wall clock time and date at job start Mon Mar 30 2020 02:29:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.47165 * 2 1 4 4 C 1.50700 * 109.47349 * 239.99717 * 2 1 3 5 5 H 1.07999 * 119.99406 * 240.00194 * 4 2 1 6 6 C 1.37869 * 120.00169 * 59.99824 * 4 2 1 7 7 N 1.31516 * 120.00111 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99835 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47169 * 90.00243 * 8 6 4 10 10 H 1.48506 * 109.47040 * 209.99946 * 8 6 4 11 11 H 1.48497 * 109.47352 * 329.99948 * 8 6 4 12 12 C 1.50702 * 109.47017 * 119.99167 * 2 1 3 13 13 C 1.38287 * 119.93935 * 60.00385 * 12 2 1 14 14 C 1.38128 * 120.05201 * 180.02562 * 13 12 2 15 15 C 1.38750 * 119.94573 * 359.97438 * 14 13 12 16 16 O 1.35897 * 120.05790 * 179.97438 * 15 14 13 17 17 C 1.38714 * 119.88689 * 359.97438 * 15 14 13 18 18 C 1.50706 * 120.02409 * 179.97438 * 17 15 14 19 19 N 1.46899 * 109.47038 * 285.00225 * 18 17 15 20 20 C 1.38161 * 119.94313 * 0.25430 * 17 15 14 21 21 H 1.08997 * 109.47539 * 300.00683 * 1 2 3 22 22 H 1.08999 * 109.46769 * 60.00684 * 1 2 3 23 23 H 1.08998 * 109.46966 * 180.02562 * 1 2 3 24 24 H 0.96998 * 119.99840 * 180.02562 * 7 6 4 25 25 H 1.07996 * 119.97483 * 359.97438 * 13 12 2 26 26 H 1.07998 * 120.02481 * 179.97438 * 14 13 12 27 27 H 0.96706 * 113.99716 * 270.01867 * 16 15 14 28 28 H 1.09002 * 109.47199 * 45.00644 * 18 17 15 29 29 H 1.09005 * 109.46588 * 165.00138 * 18 17 15 30 30 H 1.00897 * 111.00327 * 56.05011 * 19 18 17 31 31 H 1.00900 * 110.99744 * 180.02562 * 19 18 17 32 32 H 1.08004 * 119.96835 * 179.74159 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1311 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6035 8 14 2.3227 -1.1198 -4.0077 9 1 1.3451 -2.1619 -4.4121 10 1 2.4875 -0.1406 -5.1119 11 1 3.6311 -1.7568 -3.7116 12 6 2.0323 -0.7102 1.2306 13 6 1.6975 -2.0342 1.4483 14 6 2.1562 -2.6873 2.5757 15 6 2.9539 -2.0140 3.4898 16 8 3.4060 -2.6542 4.6000 17 6 3.2891 -0.6863 3.2685 18 6 4.1549 0.0482 4.2595 19 7 3.3624 0.3786 5.4515 20 6 2.8239 -0.0362 2.1416 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 0.7090 1.1611 -3.4845 25 1 1.0762 -2.5577 0.7368 26 1 1.8941 -3.7211 2.7455 27 1 2.8153 -2.5840 5.3624 28 1 4.9957 -0.5837 4.5459 29 1 4.5283 0.9661 3.8055 30 1 2.9516 -0.4504 5.8539 31 1 3.9209 0.8723 6.1315 32 1 3.0812 0.9988 1.9710 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260750257.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:39 Heat of formation + Delta-G solvation = -55.036572 kcal Electronic energy + Delta-G solvation = -14776.051470 eV Core-core repulsion = 12314.030134 eV Total energy + Delta-G solvation = -2462.021336 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.90144 -38.14214 -36.13499 -35.28593 -32.86385 -31.54944 -29.19898 -27.20779 -25.81218 -23.90908 -23.00651 -20.92211 -19.11009 -18.31058 -17.27518 -16.85514 -16.54876 -16.17666 -15.67093 -15.25356 -14.70138 -14.64062 -13.99591 -13.77398 -13.29649 -13.15909 -13.09605 -12.85915 -12.79561 -12.43724 -12.18800 -12.06386 -11.28802 -11.25889 -10.96898 -10.47430 -9.83253 -9.51933 -9.13489 -8.09951 -6.24273 0.45112 0.51716 1.41181 1.42163 1.52417 2.42290 2.81528 3.17352 3.37438 3.78292 3.95688 4.02584 4.24383 4.46067 4.65360 4.67454 4.75458 4.87916 5.01776 5.10102 5.22829 5.27316 5.50838 5.52186 5.63410 5.69465 5.97452 6.08154 6.11322 6.20507 6.36316 6.62008 6.84379 6.90196 7.43692 8.94487 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.040975 B = 0.007093 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.182454 B = 3946.659833 C = 4123.976310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.071 3.929 3 H 0.004 0.996 4 C -0.522 4.522 5 H 0.050 0.950 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.954 3.046 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.272 1.272 12 C -0.063 4.063 13 C -0.108 4.108 14 C -0.145 4.145 15 C 0.087 3.913 16 O -0.498 6.498 17 C -0.110 4.110 18 C 0.114 3.886 19 N -0.846 5.846 20 C -0.114 4.114 21 H 0.024 0.976 22 H 0.059 0.941 23 H 0.033 0.967 24 H 0.262 0.738 25 H 0.117 0.883 26 H 0.143 0.857 27 H 0.401 0.599 28 H 0.046 0.954 29 H 0.076 0.924 30 H 0.344 0.656 31 H 0.355 0.645 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.366 -4.334 13.973 15.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.053 3.947 3 H 0.022 0.978 4 C -0.560 4.560 5 H 0.069 0.931 6 C -0.184 4.184 7 N -0.556 5.556 8 Si 0.780 3.220 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.197 1.197 12 C -0.063 4.063 13 C -0.127 4.127 14 C -0.163 4.163 15 C 0.042 3.958 16 O -0.310 6.310 17 C -0.111 4.111 18 C -0.016 4.016 19 N -0.378 5.378 20 C -0.133 4.133 21 H 0.043 0.957 22 H 0.078 0.922 23 H 0.052 0.948 24 H 0.071 0.929 25 H 0.136 0.864 26 H 0.161 0.839 27 H 0.258 0.742 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.157 0.843 31 H 0.170 0.830 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 3.334 -3.921 13.005 13.986 hybrid contribution 0.398 -0.631 -0.434 0.863 sum 3.732 -4.552 12.571 13.881 Atomic orbital electron populations 1.21623 0.97292 0.99307 0.99680 1.17741 0.93246 0.93924 0.89792 0.97821 1.21388 1.31151 1.12311 0.91177 0.93130 1.25712 0.95261 0.95680 1.01762 1.70012 1.37593 1.23972 1.24053 0.85613 0.78837 0.78428 0.79145 1.19841 1.20780 1.19666 1.20459 0.95507 0.94857 0.95468 1.20935 1.00370 0.94214 0.97155 1.21516 0.98588 1.00989 0.95216 1.18117 0.97722 0.89965 0.89970 1.84764 1.49894 1.75098 1.21243 1.20171 1.00630 0.93366 0.96958 1.20464 0.92804 0.98220 0.90138 1.58665 1.39214 1.30079 1.09872 1.20944 0.98453 0.99663 0.94205 0.95731 0.92177 0.94788 0.92863 0.86449 0.83878 0.74165 0.93577 0.90538 0.84269 0.83049 0.86682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.00 8.78 71.98 0.63 -5.36 16 2 C 0.07 3.69 2.48 -12.29 -0.03 3.66 16 3 H 0.00 0.21 7.87 -2.38 -0.02 0.19 16 4 C -0.52 -29.08 8.24 25.60 0.21 -28.87 16 5 H 0.05 2.81 7.60 -2.91 -0.02 2.79 16 6 C 0.01 0.81 5.30 84.65 0.45 1.25 16 7 N -0.92 -53.08 11.32 21.44 0.24 -52.84 16 8 Si 0.95 43.89 29.54 68.60 2.03 45.92 16 9 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 10 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 12 C -0.06 -2.77 4.74 -19.85 -0.09 -2.86 16 13 C -0.11 -4.30 8.70 22.26 0.19 -4.10 16 14 C -0.14 -4.74 9.99 22.37 0.22 -4.52 16 15 C 0.09 2.65 6.56 22.51 0.15 2.80 16 16 O -0.50 -11.67 12.46 -92.39 -1.15 -12.82 16 17 C -0.11 -3.58 5.44 -19.77 -0.11 -3.69 16 18 C 0.11 2.89 6.54 85.56 0.56 3.45 16 19 N -0.85 -17.32 9.61 -189.99 -1.83 -19.15 16 20 C -0.11 -4.48 9.29 22.25 0.21 -4.27 16 21 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 22 H 0.06 3.26 6.07 -2.39 -0.01 3.25 16 23 H 0.03 1.58 7.38 -2.39 -0.02 1.56 16 24 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 25 H 0.12 4.74 7.57 -2.91 -0.02 4.72 16 26 H 0.14 3.87 8.06 -2.91 -0.02 3.85 16 27 H 0.40 5.36 8.41 -74.05 -0.62 4.73 16 28 H 0.05 1.10 8.01 -2.39 -0.02 1.08 16 29 H 0.08 1.96 7.95 -2.38 -0.02 1.94 16 30 H 0.34 5.88 7.81 -89.70 -0.70 5.18 16 31 H 0.36 5.42 9.08 -89.69 -0.81 4.61 16 32 H 0.12 4.49 7.89 -2.91 -0.02 4.46 16 Total: -1.00 -64.10 270.44 0.70 -63.41 By element: Atomic # 1 Polarization: 18.98 SS G_CDS: -0.99 Total: 18.00 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 2.39 Total: -42.52 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -1.58 Total: -71.99 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: -1.15 Total: -12.82 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -64.10 0.70 -63.41 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260750257.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.371 kcal (2) G-P(sol) polarization free energy of solvation -64.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds