Wall clock time and date at job start Mon Mar 30 2020 02:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46964 * 2 1 4 4 C 1.50702 * 109.46922 * 119.99460 * 2 1 3 5 5 H 1.08000 * 119.99732 * 120.00193 * 4 2 1 6 6 C 1.37868 * 120.00073 * 300.00333 * 4 2 1 7 7 N 1.31519 * 120.00329 * 359.97438 * 6 4 2 8 8 Si 1.86806 * 120.00103 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47003 * 89.99638 * 8 6 4 10 10 H 1.48498 * 109.47522 * 210.00167 * 8 6 4 11 11 H 1.48500 * 109.46868 * 330.00380 * 8 6 4 12 12 C 1.50700 * 109.47104 * 239.99823 * 2 1 3 13 13 C 1.38287 * 119.94435 * 299.99709 * 12 2 1 14 14 C 1.38121 * 120.05837 * 180.02562 * 13 12 2 15 15 C 1.38752 * 119.94343 * 359.97438 * 14 13 12 16 16 O 1.35897 * 120.05862 * 179.97438 * 15 14 13 17 17 C 1.38712 * 119.88696 * 0.02562 * 15 14 13 18 18 C 1.50701 * 120.02880 * 179.97438 * 17 15 14 19 19 N 1.46901 * 109.46921 * 284.99928 * 18 17 15 20 20 C 1.38169 * 119.94508 * 0.25115 * 17 15 14 21 21 H 1.08994 * 109.47295 * 300.00542 * 1 2 3 22 22 H 1.09007 * 109.47139 * 60.00543 * 1 2 3 23 23 H 1.09000 * 109.46964 * 180.02562 * 1 2 3 24 24 H 0.97003 * 120.00059 * 180.02562 * 7 6 4 25 25 H 1.08006 * 119.97195 * 0.02974 * 13 12 2 26 26 H 1.07995 * 120.02773 * 180.02562 * 14 13 12 27 27 H 0.96706 * 113.99690 * 270.02626 * 16 15 14 28 28 H 1.09002 * 109.47060 * 45.00109 * 18 17 15 29 29 H 1.09001 * 109.47380 * 165.00197 * 18 17 15 30 30 H 1.00898 * 110.99877 * 56.04636 * 19 18 17 31 31 H 1.00908 * 110.99847 * 179.97438 * 19 18 17 32 32 H 1.07997 * 119.97281 * 179.74908 * 20 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9434 0.8304 2.6033 8 14 2.3212 -1.1201 4.0081 9 1 3.6295 -0.5456 4.4125 10 1 1.3429 -0.9490 5.1121 11 1 2.4858 -2.5660 3.7121 12 6 2.0323 -0.7104 -1.2304 13 6 1.6976 -2.0344 -1.4481 14 6 2.1571 -2.6880 -2.5747 15 6 2.9549 -2.0149 -3.4889 16 8 3.4087 -2.6558 -4.5980 17 6 3.2892 -0.6868 -3.2683 18 6 4.1559 0.0472 -4.2588 19 7 5.5489 -0.3959 -4.1132 20 6 2.8317 -0.0392 -2.1368 21 1 -0.3633 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 0.7094 1.1620 3.4844 25 1 1.0762 -2.5579 -0.7364 26 1 1.8951 -3.7219 -2.7444 27 1 4.2612 -3.0960 -4.4766 28 1 3.8110 -0.1651 -5.2708 29 1 4.0942 1.1192 -4.0713 30 1 5.6229 -1.3966 -4.2188 31 1 6.1506 0.0819 -4.7674 32 1 3.0951 0.9936 -1.9626 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260750258.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:42 Heat of formation + Delta-G solvation = -33.629574 kcal Electronic energy + Delta-G solvation = -14784.639449 eV Core-core repulsion = 12323.546391 eV Total energy + Delta-G solvation = -2461.093059 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.53206 -36.72926 -34.82494 -33.64256 -30.99626 -30.22353 -27.61339 -25.12253 -24.59260 -22.26564 -21.55817 -19.34675 -17.80139 -16.45092 -15.91985 -15.35936 -14.94808 -14.84060 -14.43987 -13.82754 -13.24149 -12.93339 -12.48080 -11.99443 -11.90509 -11.78247 -11.44007 -11.20326 -10.90351 -10.70718 -10.26566 -10.15198 -9.90083 -9.46516 -9.01108 -8.71820 -8.37888 -8.22345 -7.63811 -6.01528 -4.08342 1.86175 1.96253 3.30111 3.36706 3.40138 4.16404 4.43768 4.63431 4.84572 5.14289 5.26422 5.30328 5.55782 5.78853 5.99150 6.12445 6.19988 6.41917 6.52939 6.83674 6.93996 6.95814 7.07846 7.16743 7.19512 7.33243 7.42474 7.48440 7.71691 7.94585 7.98848 8.09296 8.38483 8.94174 9.56354 11.04138 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.036713 B = 0.007174 C = 0.007110 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.485433 B = 3902.119239 C = 3936.969359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.070 3.930 3 H 0.035 0.965 4 C -0.507 4.507 5 H 0.057 0.943 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C -0.034 4.034 13 C -0.096 4.096 14 C -0.147 4.147 15 C 0.070 3.930 16 O -0.502 6.502 17 C -0.111 4.111 18 C 0.109 3.891 19 N -0.841 5.841 20 C -0.101 4.101 21 H 0.086 0.914 22 H 0.009 0.991 23 H 0.028 0.972 24 H 0.261 0.739 25 H 0.126 0.874 26 H 0.117 0.883 27 H 0.375 0.625 28 H 0.036 0.964 29 H 0.077 0.923 30 H 0.335 0.665 31 H 0.338 0.662 32 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 -3.765 -11.073 12.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.052 3.948 3 H 0.053 0.947 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.720 3.280 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.034 4.034 13 C -0.115 4.115 14 C -0.165 4.165 15 C 0.026 3.974 16 O -0.311 6.311 17 C -0.112 4.112 18 C -0.021 4.021 19 N -0.371 5.371 20 C -0.120 4.120 21 H 0.104 0.896 22 H 0.028 0.972 23 H 0.047 0.953 24 H 0.071 0.929 25 H 0.144 0.856 26 H 0.135 0.865 27 H 0.228 0.772 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.147 0.853 31 H 0.151 0.849 32 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.000 -3.132 -10.454 11.623 hybrid contribution 0.686 -1.028 0.116 1.241 sum 4.686 -4.160 -10.338 12.089 Atomic orbital electron populations 1.21794 0.97569 0.99317 1.00318 1.17905 0.92875 0.95492 0.88531 0.94663 1.21109 1.31146 1.12408 0.89841 0.92445 1.24957 0.95019 0.95015 0.98948 1.69886 1.36672 1.22894 1.23437 0.86580 0.78611 0.80109 0.82652 1.20655 1.21216 1.19893 1.20727 0.93032 0.93809 0.95829 1.20994 0.99712 0.94813 0.95945 1.21294 1.00754 0.99867 0.94624 1.18116 1.00347 0.90864 0.88058 1.84813 1.40862 1.71423 1.33994 1.19894 1.00254 0.94208 0.96858 1.20542 0.86959 0.98944 0.95622 1.58753 1.07697 1.10630 1.60015 1.20922 0.98183 1.00036 0.92816 0.89578 0.97223 0.95260 0.92931 0.85593 0.86520 0.77177 0.94613 0.90477 0.85311 0.84937 0.86211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.17 8.78 37.16 0.33 -2.85 16 2 C 0.07 1.75 2.48 -92.92 -0.23 1.52 16 3 H 0.04 0.94 7.87 -51.93 -0.41 0.53 16 4 C -0.51 -13.74 8.24 -34.44 -0.28 -14.03 16 5 H 0.06 1.56 7.60 -52.49 -0.40 1.16 16 6 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 7 N -0.89 -25.14 11.32 55.43 0.63 -24.52 16 8 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 11 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 12 C -0.03 -0.74 4.74 -104.60 -0.50 -1.23 16 13 C -0.10 -1.93 8.70 -39.61 -0.34 -2.27 16 14 C -0.15 -2.57 9.99 -39.43 -0.39 -2.97 16 15 C 0.07 1.18 6.56 -39.22 -0.26 0.92 16 16 O -0.50 -6.96 12.46 -19.42 -0.24 -7.21 16 17 C -0.11 -1.91 5.44 -104.47 -0.57 -2.48 16 18 C 0.11 1.53 6.54 -4.97 -0.03 1.49 16 19 N -0.84 -10.24 9.61 -11.41 -0.11 -10.35 16 20 C -0.10 -1.98 9.29 -39.61 -0.37 -2.35 16 21 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 22 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 23 H 0.03 0.66 7.38 -51.93 -0.38 0.28 16 24 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 25 H 0.13 2.53 7.57 -52.48 -0.40 2.13 16 26 H 0.12 1.78 8.06 -52.49 -0.42 1.35 16 27 H 0.37 3.52 8.41 45.56 0.38 3.90 16 28 H 0.04 0.48 8.01 -51.93 -0.42 0.06 16 29 H 0.08 1.05 7.95 -51.93 -0.41 0.63 16 30 H 0.33 3.63 7.81 -39.29 -0.31 3.33 16 31 H 0.34 3.23 9.08 -39.29 -0.36 2.87 16 32 H 0.12 2.27 7.89 -52.49 -0.41 1.85 16 LS Contribution 270.45 15.07 4.08 4.08 Total: -1.00 -29.75 270.45 -6.82 -36.57 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -3.41 Total: 7.91 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: -2.74 Total: -22.65 kcal Atomic # 7 Polarization: -35.38 SS G_CDS: 0.52 Total: -34.87 kcal Atomic # 8 Polarization: -6.96 SS G_CDS: -0.24 Total: -7.21 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.75 -6.82 -36.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260750258.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.940 kcal (2) G-P(sol) polarization free energy of solvation -29.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds