Wall clock time and date at job start Mon Mar 30 2020 02:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46875 * 2 1 4 4 C 1.50698 * 109.47503 * 240.00080 * 2 1 3 5 5 H 1.08001 * 120.00022 * 240.00278 * 4 2 1 6 6 C 1.37880 * 119.99868 * 59.99565 * 4 2 1 7 7 N 1.31518 * 120.00049 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99772 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47217 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47388 * 120.00110 * 8 6 4 11 11 H 1.48502 * 109.46959 * 239.99794 * 8 6 4 12 12 C 1.50694 * 109.47141 * 119.99680 * 2 1 3 13 13 O 1.34588 * 126.98274 * 60.02975 * 12 2 1 14 14 N 1.21523 * 111.65271 * 179.97438 * 13 12 2 15 15 C 1.29071 * 111.29044 * 359.91256 * 14 13 12 16 16 C 1.33890 * 126.98379 * 239.99969 * 12 2 1 17 17 C 1.50149 * 131.32861 * 0.35348 * 16 12 2 18 18 C 1.53562 * 108.01922 * 163.68774 * 17 16 12 19 19 C 1.53009 * 109.82442 * 50.11970 * 18 17 16 20 20 C 1.50615 * 130.42257 * 180.42128 * 15 14 13 21 21 H 1.09005 * 109.47521 * 60.00501 * 1 2 3 22 22 H 1.09006 * 109.46875 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47625 * 299.99743 * 1 2 3 24 24 H 0.96999 * 119.99457 * 180.02562 * 7 6 4 25 25 H 1.08996 * 109.75287 * 283.32050 * 17 16 12 26 26 H 1.09002 * 109.74854 * 44.00908 * 17 16 12 27 27 H 1.08995 * 109.41378 * 170.23037 * 18 17 16 28 28 H 1.09002 * 109.41267 * 290.08442 * 18 17 16 29 29 H 1.08993 * 109.37878 * 48.39545 * 19 18 17 30 30 H 1.08997 * 109.38014 * 168.17528 * 19 18 17 31 31 H 1.09006 * 109.74298 * 282.80878 * 20 15 14 32 32 H 1.08994 * 109.74794 * 43.52059 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3214 -1.1203 -4.0079 9 1 3.1466 -2.2868 -3.6037 10 1 1.1663 -1.5867 -4.8161 11 1 3.1466 -0.1872 -4.8164 12 6 2.0323 -0.7103 1.2304 13 8 1.7958 -1.9881 1.5810 14 7 2.3382 -2.2728 2.6305 15 6 2.9893 -1.2667 3.1097 16 6 2.8049 -0.1987 2.1968 17 6 3.3910 1.1720 2.3763 18 6 3.8375 1.3099 3.8391 19 6 4.6944 0.1059 4.2358 20 6 3.8127 -1.1445 4.3649 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 0.7088 1.1613 -3.4844 25 1 4.2494 1.2950 1.7160 26 1 2.6390 1.9270 2.1472 27 1 4.4204 2.2235 3.9554 28 1 2.9593 1.3560 4.4831 29 1 5.4554 -0.0630 3.4740 30 1 5.1779 0.3055 5.1921 31 1 3.1550 -1.0460 5.2286 32 1 4.4424 -2.0267 4.4796 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260763123.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:34 Heat of formation + Delta-G solvation = 30.308233 kcal Electronic energy + Delta-G solvation = -15218.014561 eV Core-core repulsion = 12759.694054 eV Total energy + Delta-G solvation = -2458.320508 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.116 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -44.01354 -37.25491 -34.85822 -32.13877 -31.81164 -30.26473 -28.32432 -25.25900 -24.44562 -22.63592 -21.99248 -19.59635 -18.91407 -16.82193 -16.26976 -15.64835 -14.93366 -14.56943 -14.18084 -13.70832 -13.21804 -13.00770 -12.65426 -12.11279 -12.05900 -11.57752 -11.16111 -11.00345 -10.95888 -10.74247 -10.72102 -10.45930 -10.28745 -10.04520 -9.82216 -9.25017 -9.14234 -8.50429 -8.13131 -6.13005 -4.20544 2.42939 2.98578 3.25708 3.33958 3.40106 4.10409 4.36543 4.53656 4.93341 5.01431 5.18795 5.20087 5.55387 5.60257 5.63438 5.73895 5.87383 6.01086 6.10562 6.19269 6.31224 6.46926 6.51001 6.56946 6.73297 6.83668 6.99159 7.05971 7.50460 7.73079 7.93277 8.17381 8.80192 9.10014 9.44979 10.92836 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038556 B = 0.008091 C = 0.007844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.042431 B = 3459.956319 C = 3568.692447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.112 3.888 3 H 0.061 0.939 4 C -0.515 4.515 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.888 5.888 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.052 3.948 13 O 0.077 5.923 14 N -0.382 5.382 15 C 0.014 3.986 16 C -0.249 4.249 17 C -0.033 4.033 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.034 4.034 21 H 0.094 0.906 22 H 0.035 0.965 23 H 0.012 0.988 24 H 0.263 0.737 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.078 0.922 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.586 1.655 10.136 11.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.093 3.907 3 H 0.079 0.921 4 C -0.553 4.553 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.527 5.527 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.208 1.208 11 H -0.209 1.209 12 C -0.010 4.010 13 O 0.018 5.982 14 N -0.091 5.091 15 C -0.148 4.148 16 C -0.254 4.254 17 C -0.071 4.071 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.072 4.072 21 H 0.112 0.888 22 H 0.054 0.946 23 H 0.032 0.968 24 H 0.073 0.927 25 H 0.091 0.909 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.097 0.903 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.284 0.500 10.372 11.232 hybrid contribution 0.511 0.234 -0.960 1.112 sum 4.795 0.734 9.412 10.588 Atomic orbital electron populations 1.21816 0.96649 1.00224 1.00894 1.17682 0.93534 0.94458 0.85027 0.92090 1.21022 1.31948 1.12794 0.89525 0.92145 1.24911 0.94762 0.94921 0.99021 1.69873 1.36305 1.22708 1.23769 0.86422 0.78753 0.79733 0.82523 1.19635 1.20758 1.20867 1.24921 0.95123 0.83228 0.97709 1.85055 1.56080 1.28017 1.29007 1.73460 1.12910 1.24030 0.98733 1.23167 1.01119 0.90651 0.99826 1.20502 1.08366 0.99040 0.97479 1.19771 0.99909 0.91461 0.95962 1.21597 0.99601 0.97583 0.96595 1.21577 0.97958 0.94203 1.01516 1.19963 0.96306 0.98908 0.92072 0.88783 0.94569 0.96845 0.92675 0.90899 0.90744 0.91575 0.91965 0.91492 0.91419 0.90340 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.28 8.95 37.16 0.33 -2.95 16 2 C 0.11 2.78 2.72 -92.93 -0.25 2.52 16 3 H 0.06 1.55 7.85 -51.93 -0.41 1.14 16 4 C -0.51 -13.97 8.55 -34.44 -0.29 -14.26 16 5 H 0.06 1.68 7.74 -52.49 -0.41 1.28 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.28 11.32 55.43 0.63 -23.65 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.05 1.20 5.92 -35.84 -0.21 0.98 16 13 O 0.08 1.81 11.23 15.53 0.17 1.99 16 14 N -0.38 -8.32 12.06 32.97 0.40 -7.92 16 15 C 0.01 0.27 7.22 -82.47 -0.60 -0.33 16 16 C -0.25 -4.99 6.01 -105.10 -0.63 -5.62 16 17 C -0.03 -0.54 6.01 -27.86 -0.17 -0.71 16 18 C -0.12 -1.47 5.87 -26.43 -0.16 -1.62 16 19 C -0.11 -1.38 5.84 -26.44 -0.15 -1.53 16 20 C -0.03 -0.49 6.32 -27.64 -0.17 -0.66 16 21 H 0.09 2.39 6.07 -51.93 -0.32 2.08 16 22 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 23 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 24 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 25 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 26 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 27 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 29 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 265.49 15.07 4.00 4.00 Total: -1.00 -28.45 265.49 -6.71 -35.16 By element: Atomic # 1 Polarization: 1.48 SS G_CDS: -4.49 Total: -3.00 kcal Atomic # 6 Polarization: -20.12 SS G_CDS: -2.40 Total: -22.52 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 1.03 Total: -31.58 kcal Atomic # 8 Polarization: 1.81 SS G_CDS: 0.17 Total: 1.99 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -28.45 -6.71 -35.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260763123.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.469 kcal (2) G-P(sol) polarization free energy of solvation -28.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds