Wall clock time and date at job start Mon Mar 30 2020 03:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00461 * 2 1 4 4 H 1.48496 * 109.47370 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.46691 * 300.00356 * 3 2 1 6 6 H 1.48498 * 109.46782 * 59.99861 * 3 2 1 7 7 C 1.37879 * 119.99535 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00379 * 359.97438 * 7 2 1 10 10 C 1.53123 * 109.52570 * 180.02562 * 9 7 2 11 11 C 1.53036 * 109.27788 * 177.56259 * 10 9 7 12 12 N 1.46842 * 109.52190 * 300.81892 * 11 10 9 13 13 C 1.39986 * 110.99801 * 185.84095 * 12 11 10 14 14 C 1.40436 * 125.97684 * 180.02562 * 13 12 11 15 15 C 1.35244 * 107.86114 * 179.97438 * 14 13 12 16 16 N 1.34960 * 107.86856 * 359.97438 * 15 14 13 17 17 H 0.97002 * 125.97716 * 179.97438 * 16 15 14 18 18 N 1.31225 * 125.97778 * 359.68998 * 13 12 11 19 19 C 1.46848 * 111.20069 * 61.74451 * 12 11 10 20 20 C 1.53032 * 109.52348 * 298.25721 * 19 12 11 21 21 H 0.97004 * 119.99991 * 0.02562 * 1 2 3 22 22 H 1.09007 * 109.57244 * 59.84439 * 9 7 2 23 23 H 1.09000 * 109.50367 * 57.61804 * 10 9 7 24 24 H 1.09006 * 109.50264 * 297.50143 * 10 9 7 25 25 H 1.09002 * 109.46126 * 60.83950 * 11 10 9 26 26 H 1.09000 * 109.45809 * 180.80452 * 11 10 9 27 27 H 1.07995 * 126.06657 * 359.96124 * 14 13 12 28 28 H 1.08001 * 126.06765 * 180.02562 * 15 14 13 29 29 H 1.09003 * 109.46014 * 58.27448 * 19 12 11 30 30 H 1.08995 * 109.46374 * 178.23478 * 19 12 11 31 31 H 1.08996 * 109.50421 * 179.11872 * 20 19 12 32 32 H 1.08997 * 109.50237 * 299.24201 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2448 -3.6640 -0.0005 11 6 1.4749 -4.9852 0.0609 12 7 0.6541 -5.0186 1.2780 13 6 0.0382 -6.2661 1.4336 14 6 -0.8136 -6.6401 2.4856 15 6 -1.1987 -7.9190 2.2728 16 7 -0.6163 -8.3424 1.1313 17 1 -0.7141 -9.2218 0.7338 18 7 0.1510 -7.2885 0.6187 19 6 -0.3396 -3.9374 1.2784 20 6 0.3761 -2.5850 1.2532 21 1 -0.4850 0.8401 -0.0004 22 1 0.6211 -2.5572 -0.8884 23 1 2.8996 -3.5837 0.8672 24 1 2.8420 -3.6329 -0.9119 25 1 0.8307 -5.0711 -0.8142 26 1 2.1802 -5.8161 0.0755 27 1 -1.1087 -6.0172 3.3169 28 1 -1.8563 -8.4984 2.9038 29 1 -0.9754 -4.0283 0.3976 30 1 -0.9523 -4.0076 2.1771 31 1 -0.3619 -1.7830 1.2377 32 1 1.0015 -2.4878 2.1406 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260808760.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:48 Heat of formation + Delta-G solvation = 53.588853 kcal Electronic energy + Delta-G solvation = -15004.926640 eV Core-core repulsion = 12579.908407 eV Total energy + Delta-G solvation = -2425.018233 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.12970 -39.60148 -35.80254 -33.45344 -31.86689 -30.86478 -30.60514 -27.57853 -24.34203 -23.92228 -22.00903 -21.06408 -20.27761 -19.02503 -18.39862 -17.02925 -16.40686 -16.01768 -15.50976 -15.00152 -14.56134 -14.47419 -14.44917 -14.15659 -13.68610 -13.09862 -12.88001 -12.78544 -12.30844 -12.10377 -11.97548 -11.61382 -11.52480 -11.02906 -10.78215 -10.67464 -10.38513 -9.74969 -9.05203 -8.06612 -6.19569 1.02726 1.42976 1.44944 1.56475 1.79254 2.08354 2.46404 3.00435 3.20872 3.93360 4.06332 4.23700 4.36240 4.36940 4.53505 4.66083 4.74958 4.87980 4.90604 4.96357 5.03122 5.18086 5.28110 5.37902 5.54763 5.64225 5.80800 6.00091 6.15688 6.37817 6.41764 6.63480 6.85977 6.90999 7.48259 8.98953 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.071807 B = 0.006345 C = 0.006032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 389.838810 B = 4411.871757 C = 4640.904165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.279 1.279 7 C -0.531 4.531 8 H 0.053 0.947 9 C 0.042 3.958 10 C -0.100 4.100 11 C 0.077 3.923 12 N -0.457 5.457 13 C 0.236 3.764 14 C -0.305 4.305 15 C 0.097 3.903 16 N -0.470 5.470 17 H 0.453 0.547 18 N -0.371 5.371 19 C 0.080 3.920 20 C -0.095 4.095 21 H 0.261 0.739 22 H -0.010 1.010 23 H 0.057 0.943 24 H 0.059 0.941 25 H 0.024 0.976 26 H 0.077 0.923 27 H 0.155 0.845 28 H 0.230 0.770 29 H 0.018 0.982 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.621 -14.565 5.018 15.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.185 4.185 3 Si 0.781 3.219 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.205 1.205 7 C -0.569 4.569 8 H 0.071 0.929 9 C 0.023 3.977 10 C -0.138 4.138 11 C -0.050 4.050 12 N -0.179 5.179 13 C -0.020 4.020 14 C -0.336 4.336 15 C -0.052 4.052 16 N -0.181 5.181 17 H 0.300 0.700 18 N -0.202 5.202 19 C -0.047 4.047 20 C -0.133 4.133 21 H 0.070 0.930 22 H 0.008 0.992 23 H 0.075 0.925 24 H 0.078 0.922 25 H 0.042 0.958 26 H 0.095 0.905 27 H 0.173 0.827 28 H 0.246 0.754 29 H 0.037 0.963 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.915 -14.745 4.353 15.648 hybrid contribution -0.457 0.901 -0.277 1.048 sum -3.372 -13.844 4.076 14.820 Atomic orbital electron populations 1.70008 1.07145 1.27097 1.51550 1.25733 0.95688 1.02328 0.94769 0.85550 0.79060 0.79729 0.77569 1.19275 1.20769 1.20469 1.21562 0.93051 0.91945 1.50333 0.92922 1.18702 0.93152 0.92620 0.93224 1.21603 0.98137 0.93214 1.00829 1.21918 0.95731 0.98633 0.88722 1.59392 1.21350 0.99353 1.37766 1.21288 0.95166 0.91295 0.94279 1.21509 1.09371 0.98659 1.04042 1.23171 0.97464 0.95055 0.89470 1.46022 1.37772 1.13849 1.20432 0.70028 1.77404 1.22562 0.98074 1.22186 1.22155 0.92090 0.90184 1.00247 1.21480 0.99515 0.93833 0.98505 0.92984 0.99209 0.92462 0.92216 0.95765 0.90466 0.82697 0.75378 0.96325 0.89395 0.90947 0.94152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.34 11.37 21.45 0.24 -53.10 16 2 C 0.01 0.74 5.31 84.66 0.45 1.19 16 3 Si 0.96 44.07 29.54 68.60 2.03 46.09 16 4 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.53 -29.89 8.56 25.60 0.22 -29.67 16 8 H 0.05 2.92 7.75 -2.91 -0.02 2.90 16 9 C 0.04 2.16 2.16 -11.46 -0.02 2.14 16 10 C -0.10 -4.44 5.32 30.65 0.16 -4.27 16 11 C 0.08 3.13 4.89 86.33 0.42 3.55 16 12 N -0.46 -18.04 4.75 -700.66 -3.33 -21.37 16 13 C 0.24 8.27 6.59 133.39 0.88 9.15 16 14 C -0.31 -8.24 10.09 22.11 0.22 -8.02 16 15 C 0.10 1.77 11.98 83.52 1.00 2.77 16 16 N -0.47 -10.13 7.35 -57.63 -0.42 -10.55 16 17 H 0.45 6.05 8.96 -213.33 -1.91 4.14 16 18 N -0.37 -12.28 11.73 -54.54 -0.64 -12.92 16 19 C 0.08 3.29 5.34 86.32 0.46 3.75 16 20 C -0.09 -4.62 5.12 30.65 0.16 -4.46 16 21 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 22 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 23 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 24 H 0.06 2.54 8.14 -2.38 -0.02 2.52 16 25 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 26 H 0.08 2.94 7.93 -2.39 -0.02 2.92 16 27 H 0.16 3.80 7.90 -2.91 -0.02 3.77 16 28 H 0.23 1.49 8.06 -2.91 -0.02 1.46 16 29 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 3.18 7.44 -2.39 -0.02 3.17 16 31 H 0.07 3.90 6.17 -2.39 -0.01 3.88 16 32 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -68.04 262.78 1.03 -67.01 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -0.80 Total: 8.73 kcal Atomic # 6 Polarization: -27.84 SS G_CDS: 3.95 Total: -23.89 kcal Atomic # 7 Polarization: -93.80 SS G_CDS: -4.15 Total: -97.94 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.09 kcal Total: -68.04 1.03 -67.01 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260808760.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.601 kcal (2) G-P(sol) polarization free energy of solvation -68.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.012 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds