Wall clock time and date at job start Mon Mar 30 2020 03:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38627 * 120.39981 * 2 1 4 4 C 1.38589 * 118.56094 * 180.02562 * 3 2 1 5 5 C 1.50692 * 120.40359 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47089 * 303.67850 * 5 4 3 7 7 C 1.52993 * 109.47261 * 63.68071 * 5 4 3 8 8 C 1.50708 * 109.47007 * 183.68109 * 5 4 3 9 9 H 1.07995 * 119.99673 * 235.27082 * 8 5 4 10 10 C 1.37874 * 120.00114 * 55.26563 * 8 5 4 11 11 N 1.31508 * 119.99916 * 191.18282 * 10 8 5 12 12 Si 1.86799 * 119.99983 * 11.19159 * 10 8 5 13 13 H 1.48493 * 109.47318 * 84.65288 * 12 10 8 14 14 H 1.48498 * 109.47001 * 204.65584 * 12 10 8 15 15 H 1.48503 * 109.46777 * 324.65068 * 12 10 8 16 16 N 1.32297 * 119.19178 * 359.72413 * 4 3 2 17 17 C 1.32477 * 120.74198 * 0.54381 * 16 4 3 18 18 N 1.38414 * 119.21468 * 179.71604 * 17 16 4 19 19 N 1.32257 * 120.40508 * 180.02562 * 2 1 3 20 20 H 1.09001 * 109.47125 * 269.98077 * 1 2 3 21 21 H 1.09005 * 109.47284 * 29.98158 * 1 2 3 22 22 H 1.09002 * 109.47378 * 149.98127 * 1 2 3 23 23 H 1.07996 * 120.72490 * 359.97438 * 3 2 1 24 24 H 1.08992 * 109.47043 * 66.17518 * 6 5 4 25 25 H 1.09001 * 109.47188 * 186.17401 * 6 5 4 26 26 H 1.08998 * 109.47031 * 306.17204 * 6 5 4 27 27 H 1.09004 * 109.47478 * 59.99899 * 7 5 4 28 28 H 1.09003 * 109.47487 * 179.97438 * 7 5 4 29 29 H 1.09001 * 109.46951 * 299.99801 * 7 5 4 30 30 H 0.97004 * 120.00152 * 179.97438 * 11 10 8 31 31 H 0.97003 * 119.99259 * 179.73743 * 18 17 16 32 32 H 0.96999 * 120.00076 * 359.46160 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2084 1.1957 0.0000 4 6 3.5936 1.1512 -0.0005 5 6 4.3976 2.4258 -0.0011 6 6 3.9926 3.2836 -1.2016 7 6 4.1293 3.1986 1.2917 8 6 5.8648 2.0941 -0.0929 9 1 6.5507 2.4686 0.6526 10 6 6.3315 1.3126 -1.1284 11 7 7.5585 0.8404 -1.0945 12 14 5.2212 0.9246 -2.5796 13 1 5.2889 2.0334 -3.5650 14 1 5.6692 -0.3369 -3.2223 15 1 3.8227 0.7688 -2.1050 16 7 4.2015 -0.0238 0.0045 17 6 3.5014 -1.1485 -0.0008 18 7 4.1699 -2.3604 -0.0012 19 7 2.1763 -1.1407 -0.0005 20 1 -0.3633 -0.0003 1.0277 21 1 -0.3634 0.8902 -0.5136 22 1 -0.3634 -0.8898 -0.5141 23 1 1.6869 2.1414 -0.0004 24 1 2.9613 3.6147 -1.0801 25 1 4.6479 4.1523 -1.2650 26 1 4.0802 2.6950 -2.1148 27 1 4.4178 2.5875 2.1469 28 1 4.7111 4.1203 1.2915 29 1 3.0680 3.4385 1.3580 30 1 7.8867 0.2902 -1.8229 31 1 3.6685 -3.1908 -0.0012 32 1 5.1397 -2.3794 -0.0056 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260852771.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:26:10 Heat of formation + Delta-G solvation = 61.394194 kcal Electronic energy + Delta-G solvation = -15690.742632 eV Core-core repulsion = 13266.062864 eV Total energy + Delta-G solvation = -2424.679768 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.40048 -36.29199 -34.55497 -32.40222 -31.63891 -29.92350 -27.62217 -26.52124 -25.07953 -22.83614 -21.97527 -19.14743 -17.51030 -16.72641 -15.75986 -15.20034 -14.88178 -14.74589 -14.28800 -13.47370 -12.99207 -12.81057 -12.66863 -12.27925 -12.22484 -12.07267 -11.47232 -10.99548 -10.59318 -10.37189 -10.19279 -10.10180 -9.98262 -9.54354 -9.19123 -8.69068 -8.36116 -8.01669 -7.59313 -5.95814 -3.93781 1.91679 2.04086 3.36534 3.42512 3.48344 3.81583 4.54126 4.71771 4.80629 5.10224 5.44776 5.54834 5.73195 5.80491 5.92433 5.94664 6.09565 6.18995 6.26455 6.37867 6.46721 6.60059 6.66771 6.76152 6.96894 7.19459 7.30490 7.65118 7.78728 7.90283 8.19836 8.58566 9.03171 9.26799 9.72398 11.16600 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025584 B = 0.015306 C = 0.012138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.160359 B = 1828.933052 C = 2306.308062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.195 3.805 3 C -0.300 4.300 4 C 0.262 3.738 5 C 0.069 3.931 6 C -0.138 4.138 7 C -0.114 4.114 8 C -0.503 4.503 9 H 0.075 0.925 10 C 0.109 3.891 11 N -0.893 5.893 12 Si 0.898 3.102 13 H -0.297 1.297 14 H -0.307 1.307 15 H -0.273 1.273 16 N -0.522 5.522 17 C 0.552 3.448 18 N -0.830 5.830 19 N -0.594 5.594 20 H 0.077 0.923 21 H 0.074 0.926 22 H 0.072 0.928 23 H 0.132 0.868 24 H 0.035 0.965 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.035 0.965 30 H 0.259 0.741 31 H 0.405 0.595 32 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.455 -1.024 1.547 11.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.049 3.951 3 C -0.325 4.325 4 C 0.114 3.886 5 C 0.067 3.933 6 C -0.196 4.196 7 C -0.172 4.172 8 C -0.539 4.539 9 H 0.093 0.907 10 C -0.094 4.094 11 N -0.530 5.530 12 Si 0.732 3.268 13 H -0.225 1.225 14 H -0.235 1.235 15 H -0.200 1.200 16 N -0.244 5.244 17 C 0.193 3.807 18 N -0.380 5.380 19 N -0.320 5.320 20 H 0.095 0.905 21 H 0.093 0.907 22 H 0.091 0.909 23 H 0.150 0.850 24 H 0.054 0.946 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.234 0.766 32 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -10.823 -1.991 1.480 11.104 hybrid contribution -0.738 -0.074 -0.995 1.241 sum -11.561 -2.065 0.485 11.754 Atomic orbital electron populations 1.20654 0.89054 1.03029 1.02760 1.21160 0.96226 0.87912 0.89832 1.22234 0.96447 0.99212 1.14611 1.22129 0.90040 0.94484 0.81959 1.17726 0.95998 0.86499 0.93041 1.22203 0.98922 1.00106 0.98350 1.21627 0.98760 0.99674 0.97149 1.20520 0.89051 1.32590 1.11782 0.90664 1.24708 0.93955 0.93145 0.97554 1.69931 1.16912 1.34073 1.32131 0.87059 0.81399 0.75768 0.82530 1.22543 1.23494 1.20013 1.68097 1.39281 0.97070 1.19906 1.19539 0.84983 0.87576 0.88593 1.41639 1.09671 1.03368 1.83288 1.67510 1.08123 1.31057 1.25294 0.90482 0.90726 0.90861 0.85019 0.94590 0.91772 0.94391 0.93374 0.92402 0.94626 0.93075 0.76593 0.75475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.27 10.22 36.00 0.37 -0.90 16 2 C 0.20 3.63 6.82 -82.27 -0.56 3.06 16 3 C -0.30 -5.90 8.51 -39.31 -0.33 -6.24 16 4 C 0.26 6.06 3.02 -82.27 -0.25 5.81 16 5 C 0.07 1.60 0.59 -156.82 -0.09 1.51 16 6 C -0.14 -2.92 7.63 37.16 0.28 -2.64 16 7 C -0.11 -2.23 8.27 37.15 0.31 -1.92 16 8 C -0.50 -13.98 8.24 -34.44 -0.28 -14.26 16 9 H 0.08 2.26 7.99 -52.49 -0.42 1.84 16 10 C 0.11 3.17 4.73 -17.82 -0.08 3.09 16 11 N -0.89 -27.38 13.96 55.43 0.77 -26.61 16 12 Si 0.90 23.82 22.23 -169.99 -3.78 20.04 16 13 H -0.30 -7.73 7.04 56.52 0.40 -7.33 16 14 H -0.31 -8.38 7.11 56.52 0.40 -7.98 16 15 H -0.27 -7.12 4.65 56.52 0.26 -6.86 16 16 N -0.52 -12.83 6.30 -10.15 -0.06 -12.90 16 17 C 0.55 12.09 8.67 -322.80 -2.80 9.29 16 18 N -0.83 -14.89 9.07 29.76 0.27 -14.63 16 19 N -0.59 -12.10 10.40 -10.15 -0.11 -12.20 16 20 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 21 H 0.07 0.82 8.10 -51.93 -0.42 0.40 16 22 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 23 H 0.13 2.20 7.34 -52.49 -0.39 1.82 16 24 H 0.04 0.63 7.49 -51.93 -0.39 0.24 16 25 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 26 H 0.04 0.87 3.34 -51.93 -0.17 0.70 16 27 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 29 H 0.03 0.59 7.68 -51.93 -0.40 0.19 16 30 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 31 H 0.40 5.86 8.94 -40.82 -0.37 5.49 16 32 H 0.41 7.34 8.94 -40.82 -0.37 6.98 16 LS Contribution 256.28 15.07 3.86 3.86 Total: -1.00 -33.10 256.28 -6.80 -39.90 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -4.31 Total: 5.73 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -3.45 Total: -3.20 kcal Atomic # 7 Polarization: -67.20 SS G_CDS: 0.87 Total: -66.33 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -3.78 Total: 20.04 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -33.10 -6.80 -39.90 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260852771.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.289 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.895 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds