Wall clock time and date at job start Mon Mar 30 2020 02:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00205 * 2 1 4 4 H 1.48500 * 109.47161 * 240.00359 * 3 2 1 5 5 H 1.48503 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47151 * 120.00224 * 3 2 1 7 7 C 1.37878 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00055 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.39770 * 126.08899 * 265.02265 * 10 9 7 12 12 N 1.30842 * 108.32428 * 179.97438 * 11 10 9 13 13 N 1.40066 * 108.38786 * 0.02562 * 12 11 10 14 14 C 1.46500 * 126.04653 * 179.97438 * 13 12 11 15 15 C 1.53782 * 113.61567 * 300.03253 * 14 13 12 16 16 C 1.53781 * 87.08260 * 89.11128 * 15 14 13 17 17 C 1.53786 * 87.17350 * 25.39213 * 16 15 14 18 18 C 1.35258 * 107.91129 * 0.26559 * 13 12 11 19 19 N 1.39210 * 126.21577 * 179.73865 * 18 13 12 20 20 H 0.97001 * 120.00094 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47879 * 60.00136 * 9 7 2 22 22 H 1.08997 * 109.47355 * 299.99759 * 9 7 2 23 23 H 1.07999 * 125.84172 * 359.97438 * 11 10 9 24 24 H 1.08998 * 112.85283 * 168.82866 * 14 13 12 25 25 H 1.09001 * 113.61250 * 334.55945 * 15 14 13 26 26 H 1.08997 * 113.61225 * 203.65786 * 15 14 13 27 27 H 1.09002 * 113.61445 * 139.98212 * 16 15 14 28 28 H 1.09002 * 113.61408 * 270.79943 * 16 15 14 29 29 H 1.08993 * 113.61491 * 89.15923 * 17 16 15 30 30 H 1.09000 * 113.61138 * 220.06261 * 17 16 15 31 31 H 0.96997 * 120.00738 * 359.97438 * 19 18 13 32 32 H 0.97000 * 119.99370 * 179.97438 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.6907 -4.3341 -1.1258 12 7 3.5271 -5.2584 -0.7281 13 7 3.6292 -5.1911 0.6672 14 6 4.4609 -6.0508 1.5131 15 6 4.1147 -7.5450 1.4020 16 6 5.1266 -7.6129 0.2460 17 6 5.8225 -6.3994 0.8848 18 6 2.8192 -4.1964 1.0961 19 7 2.6262 -3.8052 2.4181 20 1 -0.4850 0.8400 0.0004 21 1 0.6239 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.4050 -4.1376 -2.1486 24 1 4.5302 -5.6939 2.5407 25 1 3.0862 -7.7331 1.0937 26 1 4.4092 -8.1275 2.2749 27 1 5.7348 -8.5175 0.2507 28 1 4.6894 -7.4018 -0.7299 29 1 6.5848 -6.6681 1.6160 30 1 6.1708 -5.6640 0.1595 31 1 3.0969 -4.2619 3.1328 32 1 2.0210 -3.0758 2.6245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260859812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:09 Heat of formation + Delta-G solvation = 94.150895 kcal Electronic energy + Delta-G solvation = -14882.514284 eV Core-core repulsion = 12459.254953 eV Total energy + Delta-G solvation = -2423.259331 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.64709 -38.06831 -33.90602 -33.11651 -30.99261 -28.92743 -26.16398 -25.65671 -24.95569 -22.60397 -21.01897 -19.11474 -18.69762 -16.90563 -16.13634 -15.53400 -15.18530 -14.78696 -14.42776 -14.28083 -13.41049 -12.63072 -12.45152 -12.30271 -12.16510 -11.65886 -11.12976 -10.89551 -10.71932 -10.52552 -10.47653 -10.42128 -10.29043 -9.84049 -9.32863 -9.23582 -8.28816 -8.02722 -6.63380 -5.87568 -3.92180 2.81195 2.95961 3.37493 3.41907 3.45118 3.92209 4.41036 4.43816 4.55446 4.66437 4.83913 4.91340 5.42769 5.47463 5.55775 5.63829 5.79720 5.93318 6.05817 6.11705 6.37786 6.47377 6.58349 7.02481 7.24481 7.61717 7.79298 7.94572 8.07568 8.13362 8.30142 8.57246 8.76181 9.14164 9.71081 11.18827 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049180 B = 0.006674 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.197578 B = 4194.555410 C = 4226.740753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.280 1.280 7 C -0.502 4.502 8 H 0.051 0.949 9 C 0.098 3.902 10 C -0.257 4.257 11 C 0.073 3.927 12 N -0.330 5.330 13 N -0.392 5.392 14 C 0.144 3.856 15 C -0.151 4.151 16 C -0.132 4.132 17 C -0.143 4.143 18 C 0.346 3.654 19 N -0.856 5.856 20 H 0.259 0.741 21 H 0.023 0.977 22 H 0.014 0.986 23 H 0.173 0.827 24 H 0.095 0.905 25 H 0.072 0.928 26 H 0.088 0.912 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.385 0.615 32 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.907 -12.238 4.860 15.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.145 4.145 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.206 1.206 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.060 3.940 10 C -0.273 4.273 11 C -0.112 4.112 12 N -0.152 5.152 13 N -0.182 5.182 14 C 0.039 3.961 15 C -0.189 4.189 16 C -0.170 4.170 17 C -0.181 4.181 18 C 0.122 3.878 19 N -0.407 5.407 20 H 0.069 0.931 21 H 0.041 0.959 22 H 0.033 0.967 23 H 0.190 0.810 24 H 0.113 0.887 25 H 0.091 0.909 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.116 0.884 29 H 0.105 0.895 30 H 0.096 0.904 31 H 0.212 0.788 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 8.591 -13.138 4.473 16.323 hybrid contribution -0.052 1.816 0.726 1.956 sum 8.539 -11.322 5.199 15.104 Atomic orbital electron populations 1.69947 1.05902 1.26488 1.51521 1.25012 0.94780 0.98913 0.95800 0.86716 0.79568 0.83506 0.78512 1.20363 1.21437 1.20551 1.21230 0.92908 0.90507 1.49393 0.93037 1.17433 0.91277 0.88194 0.97093 1.20041 1.11426 1.06526 0.89293 1.23462 0.94936 0.93221 0.99541 1.77173 1.25529 1.25716 0.86775 1.47815 1.37219 1.28038 1.05093 1.21776 0.91675 0.90252 0.92357 1.23326 1.00904 0.95183 0.99531 1.22852 0.97354 0.97235 0.99526 1.23206 0.95264 0.99166 1.00451 1.17698 0.93120 0.90059 0.86879 1.41462 1.54507 1.42783 1.01931 0.93094 0.95900 0.96742 0.80987 0.88717 0.90921 0.89390 0.92068 0.88376 0.89472 0.90415 0.78812 0.74719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 2 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.50 -14.16 9.09 -34.44 -0.31 -14.48 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.10 2.56 5.21 -29.04 -0.15 2.41 16 10 C -0.26 -5.85 5.32 -104.79 -0.56 -6.40 16 11 C 0.07 1.53 11.95 -17.40 -0.21 1.32 16 12 N -0.33 -6.47 10.90 30.60 0.33 -6.14 16 13 N -0.39 -7.07 3.70 -53.08 -0.20 -7.26 16 14 C 0.14 1.95 4.78 -67.02 -0.32 1.63 16 15 C -0.15 -1.77 7.88 -25.92 -0.20 -1.98 16 16 C -0.13 -1.59 7.69 -25.92 -0.20 -1.79 16 17 C -0.14 -1.74 7.70 -25.82 -0.20 -1.93 16 18 C 0.35 6.88 7.94 -153.40 -1.22 5.66 16 19 N -0.86 -14.15 9.10 31.11 0.28 -13.87 16 20 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 21 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.01 0.39 7.78 -51.93 -0.40 -0.02 16 23 H 0.17 3.23 8.06 -52.49 -0.42 2.81 16 24 H 0.09 1.08 7.15 -51.93 -0.37 0.71 16 25 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.10 1.42 7.08 -51.93 -0.37 1.05 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.39 4.93 7.86 -40.82 -0.32 4.61 16 32 H 0.42 7.29 8.32 -40.82 -0.34 6.95 16 LS Contribution 272.02 15.07 4.10 4.10 Total: -1.00 -31.62 272.02 -7.54 -39.16 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -4.30 Total: 7.23 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: -3.47 Total: -14.08 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 1.16 Total: -53.21 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -31.62 -7.54 -39.16 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260859812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.312 kcal (2) G-P(sol) polarization free energy of solvation -31.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds