Wall clock time and date at job start Mon Mar 30 2020 02:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86804 * 120.00205 * 2 1 4 4 H 1.48500 * 109.47161 * 240.00359 * 3 2 1 5 5 H 1.48503 * 109.46995 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47151 * 120.00224 * 3 2 1 7 7 C 1.37878 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00055 * 179.97438 * 7 2 1 9 9 C 1.50692 * 120.00064 * 359.97438 * 7 2 1 10 10 C 1.50706 * 109.47257 * 180.02562 * 9 7 2 11 11 C 1.39770 * 126.08899 * 265.02265 * 10 9 7 12 12 N 1.30842 * 108.32428 * 179.97438 * 11 10 9 13 13 N 1.40066 * 108.38786 * 0.02562 * 12 11 10 14 14 C 1.46500 * 126.04653 * 179.97438 * 13 12 11 15 15 C 1.53782 * 113.61567 * 300.03253 * 14 13 12 16 16 C 1.53781 * 87.08260 * 89.11128 * 15 14 13 17 17 C 1.53786 * 87.17350 * 25.39213 * 16 15 14 18 18 C 1.35258 * 107.91129 * 0.26559 * 13 12 11 19 19 N 1.39210 * 126.21577 * 179.73865 * 18 13 12 20 20 H 0.97001 * 120.00094 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47879 * 60.00136 * 9 7 2 22 22 H 1.08997 * 109.47355 * 299.99759 * 9 7 2 23 23 H 1.07999 * 125.84172 * 359.97438 * 11 10 9 24 24 H 1.08998 * 112.85283 * 168.82866 * 14 13 12 25 25 H 1.09001 * 113.61250 * 334.55945 * 15 14 13 26 26 H 1.08997 * 113.61225 * 203.65786 * 15 14 13 27 27 H 1.09002 * 113.61445 * 139.98212 * 16 15 14 28 28 H 1.09002 * 113.61408 * 270.79943 * 16 15 14 29 29 H 1.08993 * 113.61491 * 89.15923 * 17 16 15 30 30 H 1.09000 * 113.61138 * 220.06261 * 17 16 15 31 31 H 0.96997 * 120.00738 * 359.97438 * 19 18 13 32 32 H 0.97000 * 119.99370 * 179.97438 * 19 18 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 6 2.2302 -3.6446 -0.0005 11 6 2.6907 -4.3341 -1.1258 12 7 3.5271 -5.2584 -0.7281 13 7 3.6292 -5.1911 0.6672 14 6 4.4609 -6.0508 1.5131 15 6 4.1147 -7.5450 1.4020 16 6 5.1266 -7.6129 0.2460 17 6 5.8225 -6.3994 0.8848 18 6 2.8192 -4.1964 1.0961 19 7 2.6262 -3.8052 2.4181 20 1 -0.4850 0.8400 0.0004 21 1 0.6239 -2.5568 -0.8903 22 1 0.6247 -2.5571 0.8897 23 1 2.4050 -4.1376 -2.1486 24 1 4.5302 -5.6939 2.5407 25 1 3.0862 -7.7331 1.0937 26 1 4.4092 -8.1275 2.2749 27 1 5.7348 -8.5175 0.2507 28 1 4.6894 -7.4018 -0.7299 29 1 6.5848 -6.6681 1.6160 30 1 6.1708 -5.6640 0.1595 31 1 3.0969 -4.2619 3.1328 32 1 2.0210 -3.0758 2.6245 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260859812.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:59:09 Heat of formation + Delta-G solvation = 74.185467 kcal Electronic energy + Delta-G solvation = -14883.380050 eV Core-core repulsion = 12459.254953 eV Total energy + Delta-G solvation = -2424.125097 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.10705 -39.17754 -35.51552 -35.07965 -32.71547 -30.60666 -27.94223 -26.59594 -26.23762 -24.55962 -22.36654 -20.73212 -19.95866 -18.36704 -18.11493 -16.97007 -16.52529 -16.17409 -16.01738 -15.69051 -14.77754 -14.30757 -14.17996 -13.83623 -13.31502 -13.17816 -13.06474 -12.68011 -12.46856 -11.99071 -11.78637 -11.66777 -11.54948 -11.37907 -11.31469 -11.02613 -10.48289 -9.49295 -8.36189 -7.95438 -6.18970 1.28416 1.42077 1.44359 1.52315 1.60305 2.20954 2.50643 3.07147 3.21135 3.40133 3.65602 3.86395 3.95676 4.24769 4.44586 4.74660 4.76627 4.83469 4.90099 5.02498 5.06899 5.18797 5.26883 5.44049 5.50590 5.78010 5.86902 5.94370 6.11061 6.40175 6.63752 6.90880 6.93859 7.27610 7.48832 8.99979 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.049180 B = 0.006674 C = 0.006623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 569.197578 B = 4194.555410 C = 4226.740753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.956 3.044 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.513 4.513 8 H 0.043 0.957 9 C 0.114 3.886 10 C -0.302 4.302 11 C 0.059 3.941 12 N -0.329 5.329 13 N -0.384 5.384 14 C 0.118 3.882 15 C -0.137 4.137 16 C -0.135 4.135 17 C -0.134 4.134 18 C 0.354 3.646 19 N -0.842 5.842 20 H 0.262 0.738 21 H -0.007 1.007 22 H -0.003 1.003 23 H 0.181 0.819 24 H 0.123 0.877 25 H 0.050 0.950 26 H 0.127 0.873 27 H 0.087 0.913 28 H 0.066 0.934 29 H 0.125 0.875 30 H 0.050 0.950 31 H 0.406 0.594 32 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.880 -12.990 6.467 17.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.192 4.192 3 Si 0.782 3.218 4 H -0.201 1.201 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.552 4.552 8 H 0.061 0.939 9 C 0.075 3.925 10 C -0.318 4.318 11 C -0.125 4.125 12 N -0.152 5.152 13 N -0.174 5.174 14 C 0.016 3.984 15 C -0.175 4.175 16 C -0.172 4.172 17 C -0.171 4.171 18 C 0.127 3.873 19 N -0.393 5.393 20 H 0.071 0.929 21 H 0.011 0.989 22 H 0.015 0.985 23 H 0.198 0.802 24 H 0.140 0.860 25 H 0.069 0.931 26 H 0.145 0.855 27 H 0.106 0.894 28 H 0.085 0.915 29 H 0.143 0.857 30 H 0.069 0.931 31 H 0.236 0.764 32 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 10.596 -13.929 6.106 18.536 hybrid contribution -0.639 1.956 0.274 2.076 sum 9.956 -11.973 6.381 16.828 Atomic orbital electron populations 1.70068 1.07412 1.27519 1.52203 1.25817 0.95610 1.02488 0.95255 0.85647 0.78343 0.79084 0.78775 1.20053 1.20754 1.19473 1.21443 0.92554 0.91763 1.49396 0.93866 1.17086 0.91337 0.89323 0.94707 1.19802 1.13188 1.07383 0.91426 1.23608 0.95491 0.93585 0.99848 1.77133 1.24872 1.25028 0.88125 1.48121 1.36767 1.27740 1.04756 1.22415 0.92094 0.90978 0.92962 1.23332 0.99615 0.93855 1.00747 1.22810 0.97781 0.98428 0.98200 1.23244 0.95143 0.98225 1.00536 1.17683 0.92384 0.89789 0.87424 1.41409 1.54174 1.42467 1.01287 0.92889 0.98896 0.98492 0.80205 0.85956 0.93070 0.85491 0.89445 0.91484 0.85682 0.93061 0.76392 0.75106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.24 13.29 21.45 0.28 -55.95 16 2 C 0.01 0.33 5.46 84.66 0.46 0.79 16 3 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 4 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 5 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 7 C -0.51 -29.58 9.09 25.60 0.23 -29.34 16 8 H 0.04 2.51 7.74 -2.91 -0.02 2.49 16 9 C 0.11 6.19 5.21 29.10 0.15 6.34 16 10 C -0.30 -14.08 5.32 -19.98 -0.11 -14.19 16 11 C 0.06 2.54 11.95 85.21 1.02 3.56 16 12 N -0.33 -12.98 10.90 -57.09 -0.62 -13.61 16 13 N -0.38 -13.44 3.70 -321.86 -1.19 -14.63 16 14 C 0.12 2.85 4.78 45.58 0.22 3.07 16 15 C -0.14 -2.78 7.88 31.12 0.25 -2.53 16 16 C -0.13 -2.90 7.69 31.12 0.24 -2.66 16 17 C -0.13 -2.84 7.70 31.18 0.24 -2.60 16 18 C 0.35 13.92 7.94 131.42 1.04 14.97 16 19 N -0.84 -26.75 9.10 -55.50 -0.51 -27.25 16 20 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 21 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 22 H 0.00 -0.18 7.78 -2.39 -0.02 -0.20 16 23 H 0.18 7.09 8.06 -2.91 -0.02 7.07 16 24 H 0.12 2.28 7.15 -2.39 -0.02 2.26 16 25 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 26 H 0.13 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.07 1.88 7.08 -2.39 -0.02 1.86 16 29 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.41 9.32 7.86 -92.71 -0.73 8.59 16 32 H 0.42 14.25 8.32 -92.71 -0.77 13.48 16 Total: -1.00 -69.47 272.02 3.37 -66.10 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -0.37 Total: 21.06 kcal Atomic # 6 Polarization: -26.34 SS G_CDS: 3.74 Total: -22.59 kcal Atomic # 7 Polarization: -109.41 SS G_CDS: -2.03 Total: -111.44 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -69.47 3.37 -66.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260859812.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.287 kcal (2) G-P(sol) polarization free energy of solvation -69.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds