Wall clock time and date at job start Mon Mar 30 2020 03:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.35714 * 126.22177 * 2 1 4 4 N 1.40795 * 126.06634 * 359.93479 * 3 2 1 5 5 C 1.40220 * 107.86355 * 180.20637 * 3 2 1 6 6 N 1.30864 * 108.36559 * 359.61155 * 5 3 2 7 7 N 1.35969 * 126.22912 * 179.97438 * 2 1 3 8 8 C 1.46500 * 126.06734 * 0.03893 * 7 2 1 9 9 C 1.50697 * 112.85379 * 293.03087 * 8 7 2 10 10 H 1.07996 * 120.00748 * 121.46659 * 9 8 7 11 11 C 1.37881 * 119.99445 * 301.46774 * 9 8 7 12 12 N 1.31512 * 120.00137 * 354.32236 * 11 9 8 13 13 Si 1.86805 * 119.99687 * 174.32961 * 11 9 8 14 14 H 1.48500 * 109.47382 * 59.99480 * 13 11 9 15 15 H 1.48499 * 109.46999 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46942 * 299.99589 * 13 11 9 17 17 C 1.53784 * 113.61476 * 161.71752 * 8 7 2 18 18 C 1.53779 * 87.08240 * 270.88863 * 17 8 7 19 19 C 1.53776 * 87.08197 * 334.56470 * 18 17 8 20 20 H 1.08998 * 109.47325 * 85.12944 * 1 2 3 21 21 H 1.09007 * 109.47032 * 205.13004 * 1 2 3 22 22 H 1.09001 * 109.47377 * 325.12910 * 1 2 3 23 23 H 0.96995 * 120.00324 * 0.02562 * 4 3 2 24 24 H 0.97001 * 119.99545 * 179.72490 * 4 3 2 25 25 H 1.08001 * 125.81580 * 179.74945 * 5 3 2 26 26 H 0.97000 * 119.99916 * 185.01706 * 12 11 9 27 27 H 1.09002 * 113.61081 * 25.43527 * 17 8 7 28 28 H 1.09003 * 113.61393 * 156.33465 * 17 8 7 29 29 H 1.08998 * 113.60935 * 220.01559 * 18 17 8 30 30 H 1.08998 * 113.61588 * 89.11532 * 18 17 8 31 31 H 1.08996 * 113.61890 * 270.88447 * 19 18 17 32 32 H 1.09005 * 113.69229 * 139.99242 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3089 1.0949 0.0000 4 7 1.8805 2.4361 -0.0013 5 6 3.6397 0.6532 -0.0048 6 7 3.6399 -0.6554 0.0008 7 7 2.3105 -1.0968 0.0005 8 6 1.8650 -2.4924 0.0003 9 6 1.1688 -2.8847 1.2779 10 1 0.1541 -3.2532 1.2489 11 6 1.8274 -2.7731 2.4841 12 7 3.0971 -2.4316 2.5109 13 14 0.9161 -3.1073 4.0802 14 1 0.4072 -4.5024 4.0770 15 1 1.8413 -2.9210 5.2267 16 1 -0.2244 -2.1646 4.2057 17 6 2.9525 -3.4862 -0.4411 18 6 2.4543 -3.2711 -1.8799 19 6 1.0947 -2.8930 -1.2690 20 1 -0.3634 0.0873 -1.0239 21 1 -0.3633 -0.9305 0.4365 22 1 -0.3634 0.8431 0.5875 23 1 0.9328 2.6425 -0.0019 24 1 2.5332 3.1536 0.0029 25 1 4.5153 1.2854 -0.0098 26 1 3.5796 -2.4237 3.3524 27 1 3.9674 -3.1262 -0.2721 28 1 2.7945 -4.4992 -0.0710 29 1 2.4273 -4.1848 -2.4737 30 1 2.9469 -2.4456 -2.3938 31 1 0.4287 -3.7438 -1.1254 32 1 0.6085 -2.0544 -1.7676 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260883809.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:30:27 Heat of formation + Delta-G solvation = 76.305945 kcal Electronic energy + Delta-G solvation = -15768.292066 eV Core-core repulsion = 13344.258920 eV Total energy + Delta-G solvation = -2424.033146 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.70858 -39.07320 -34.69679 -34.43820 -32.80684 -29.93909 -28.19348 -26.80108 -26.23151 -24.41520 -22.11751 -20.55866 -19.62506 -18.71768 -16.89554 -16.76055 -16.49385 -15.97131 -15.50858 -15.17310 -14.88819 -14.26541 -13.62845 -13.36567 -13.29190 -13.05555 -12.88467 -12.75239 -12.55227 -12.35705 -11.88749 -11.56676 -11.50995 -11.26879 -10.83215 -10.69690 -10.40651 -9.46153 -8.12625 -7.56114 -6.31486 1.38209 1.41132 1.47066 1.59875 2.25018 2.38431 2.44506 3.22791 3.57870 3.99654 4.09657 4.16686 4.33228 4.34412 4.62873 4.70918 4.86316 4.90559 4.99627 5.09303 5.11614 5.19761 5.44948 5.54545 5.60508 5.64887 5.71329 6.06335 6.18512 6.69058 6.95577 7.12910 7.37501 7.43686 7.60314 8.88883 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.022837 B = 0.014150 C = 0.011422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.792468 B = 1978.370816 C = 2450.766338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.014 4.014 3 C 0.022 3.978 4 N -0.869 5.869 5 C -0.050 4.050 6 N -0.293 5.293 7 N -0.294 5.294 8 C 0.274 3.726 9 C -0.539 4.539 10 H 0.072 0.928 11 C 0.035 3.965 12 N -0.872 5.872 13 Si 0.945 3.055 14 H -0.264 1.264 15 H -0.294 1.294 16 H -0.272 1.272 17 C -0.115 4.115 18 C -0.131 4.131 19 C -0.130 4.130 20 H 0.077 0.923 21 H 0.063 0.937 22 H 0.075 0.925 23 H 0.396 0.604 24 H 0.399 0.601 25 H 0.180 0.820 26 H 0.256 0.744 27 H 0.039 0.961 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.099 0.901 32 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.904 4.575 -5.439 8.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.146 4.146 3 C -0.086 4.086 4 N -0.419 5.419 5 C -0.235 4.235 6 N -0.118 5.118 7 N -0.080 5.080 8 C 0.193 3.807 9 C -0.578 4.578 10 H 0.090 0.910 11 C -0.170 4.170 12 N -0.507 5.507 13 Si 0.771 3.229 14 H -0.188 1.188 15 H -0.220 1.220 16 H -0.197 1.197 17 C -0.153 4.153 18 C -0.168 4.168 19 C -0.169 4.169 20 H 0.095 0.905 21 H 0.082 0.918 22 H 0.094 0.906 23 H 0.224 0.776 24 H 0.228 0.772 25 H 0.197 0.803 26 H 0.065 0.935 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.117 0.883 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.013 3.378 -5.326 7.475 hybrid contribution -0.439 0.955 1.336 1.700 sum -4.452 4.334 -3.990 7.384 Atomic orbital electron populations 1.20176 0.87140 1.03040 1.02176 1.20694 0.95155 0.86838 1.11885 1.17491 0.91539 0.86667 1.12932 1.41194 1.08942 1.00829 1.90981 1.23580 0.96921 0.92808 1.10226 1.77056 1.01252 1.11753 1.21721 1.48888 1.01199 1.05698 1.52254 1.19198 0.92789 0.75190 0.93481 1.21348 1.00754 1.44641 0.91012 0.90999 1.25775 0.95365 0.93833 1.02048 1.70219 1.09125 1.44602 1.26714 0.85816 0.78545 0.79169 0.79358 1.18845 1.22048 1.19680 1.22819 0.98661 0.98917 0.94925 1.22778 0.96915 1.00891 0.96232 1.23308 0.96495 1.01151 0.95963 0.90464 0.91814 0.90583 0.77598 0.77241 0.80288 0.93499 0.94174 0.91024 0.89855 0.92425 0.88289 0.92101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.39 9.25 71.23 0.66 -1.73 16 2 C -0.01 -0.63 6.66 41.33 0.28 -0.36 16 3 C 0.02 0.91 7.22 37.60 0.27 1.18 16 4 N -0.87 -25.80 9.19 -51.74 -0.48 -26.27 16 5 C -0.05 -2.22 12.03 85.32 1.03 -1.19 16 6 N -0.29 -14.93 11.60 -56.78 -0.66 -15.58 16 7 N -0.29 -14.40 3.07 -294.75 -0.90 -15.30 16 8 C 0.27 13.14 0.38 3.39 0.00 13.14 16 9 C -0.54 -27.74 7.32 25.60 0.19 -27.55 16 10 H 0.07 3.54 7.82 -2.91 -0.02 3.52 16 11 C 0.04 1.89 5.39 84.66 0.46 2.34 16 12 N -0.87 -50.52 12.73 21.45 0.27 -50.25 16 13 Si 0.95 42.65 29.54 68.60 2.03 44.68 16 14 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 15 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 16 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 17 C -0.11 -5.39 6.92 31.12 0.22 -5.17 16 18 C -0.13 -5.04 7.99 31.12 0.25 -4.79 16 19 C -0.13 -5.11 7.16 31.12 0.22 -4.89 16 20 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 21 H 0.06 2.48 6.77 -2.38 -0.02 2.47 16 22 H 0.08 2.35 7.80 -2.39 -0.02 2.33 16 23 H 0.40 10.08 8.36 -92.71 -0.77 9.31 16 24 H 0.40 9.86 8.96 -92.71 -0.83 9.02 16 25 H 0.18 6.60 8.06 -2.91 -0.02 6.57 16 26 H 0.26 14.57 8.32 -92.71 -0.77 13.80 16 27 H 0.04 2.11 7.46 -2.39 -0.02 2.09 16 28 H 0.07 3.34 8.10 -2.39 -0.02 3.32 16 29 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.10 3.56 8.09 -2.39 -0.02 3.54 16 32 H 0.06 2.26 7.51 -2.38 -0.02 2.24 16 Total: -1.00 -64.34 269.44 3.36 -60.99 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: -0.47 Total: 30.75 kcal Atomic # 6 Polarization: -32.57 SS G_CDS: 3.56 Total: -29.01 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -1.77 Total: -107.41 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -64.34 3.36 -60.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260883809.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.295 kcal (2) G-P(sol) polarization free energy of solvation -64.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds