Wall clock time and date at job start Mon Mar 30 2020 03:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99977 * 2 1 4 4 H 1.48505 * 109.46998 * 270.00060 * 3 2 1 5 5 H 1.48499 * 109.47094 * 30.00062 * 3 2 1 6 6 H 1.48498 * 109.47121 * 150.00160 * 3 2 1 7 7 C 1.37880 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99755 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47284 * 300.00393 * 9 7 2 11 11 C 1.53002 * 109.46958 * 60.00311 * 9 7 2 12 12 C 1.52997 * 109.46978 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.47164 * 299.99874 * 12 11 9 14 14 C 1.52997 * 109.47127 * 59.99836 * 13 12 11 15 15 C 1.52996 * 109.46990 * 179.97438 * 9 7 2 16 16 H 1.09004 * 109.47368 * 60.00232 * 15 9 7 17 17 N 1.46500 * 109.47368 * 300.00176 * 15 9 7 18 18 N 1.28601 * 124.61855 * 299.69909 * 17 15 9 19 19 C 1.31384 * 108.71624 * 179.82991 * 18 17 15 20 20 C 1.39678 * 105.89907 * 0.41308 * 19 18 17 21 21 N 1.28599 * 124.61767 * 119.99971 * 17 15 9 22 22 H 0.96991 * 120.00061 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47097 * 299.99808 * 11 9 7 24 24 H 1.09001 * 109.47142 * 59.99773 * 11 9 7 25 25 H 1.09001 * 109.47375 * 59.99908 * 12 11 9 26 26 H 1.09000 * 109.47140 * 179.97438 * 12 11 9 27 27 H 1.08998 * 109.46505 * 299.99708 * 13 12 11 28 28 H 1.08996 * 109.46884 * 180.02562 * 13 12 11 29 29 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 30 30 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 31 31 H 1.08001 * 127.04881 * 180.16403 * 19 18 17 32 32 H 1.08001 * 127.04329 * 179.76869 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2495 12 6 -0.3944 -3.9046 -1.2492 13 6 0.5994 -5.0680 -1.2495 14 6 1.4795 -4.9872 -0.0006 15 6 2.2453 -3.6620 -0.0018 16 1 2.8727 -3.6047 0.8877 17 7 3.0867 -3.5839 -1.1986 18 7 2.6459 -3.6295 -2.4058 19 6 3.6639 -3.5297 -3.2304 20 6 4.8001 -3.4254 -2.4247 21 7 4.3672 -3.4659 -1.1849 22 1 -0.4850 0.8400 0.0004 23 1 -0.3373 -1.7514 -1.2491 24 1 0.9974 -2.5220 -2.1397 25 1 -1.0208 -3.9621 -0.3590 26 1 -1.0217 -3.9620 -2.1388 27 1 1.2257 -5.0104 -2.1397 28 1 0.0540 -6.0117 -1.2497 29 1 2.1878 -5.8157 -0.0010 30 1 0.8531 -5.0447 0.8896 31 1 3.6296 -3.5322 -4.3098 32 1 5.8245 -3.3305 -2.7536 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260889059.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:19 Heat of formation + Delta-G solvation = 103.017108 kcal Electronic energy + Delta-G solvation = -15911.164027 eV Core-core repulsion = 13488.289164 eV Total energy + Delta-G solvation = -2422.874863 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -42.81265 -37.73110 -32.97245 -32.20050 -31.46804 -29.53689 -28.90596 -24.91854 -22.85643 -22.06974 -21.17191 -20.37693 -18.94771 -16.53938 -15.83382 -15.58137 -14.86246 -14.41201 -13.96706 -13.87667 -13.23142 -12.73975 -12.21540 -11.80985 -11.51412 -11.38387 -10.97085 -10.93148 -10.72048 -10.53581 -10.32365 -9.96788 -9.95962 -9.37184 -9.24234 -9.10291 -8.66675 -8.47096 -8.25764 -6.03914 -4.10853 2.72798 3.18913 3.22924 3.28571 3.35030 3.39668 4.40140 4.92649 5.26684 5.38694 5.45286 5.55516 5.71653 5.93270 6.06340 6.15741 6.21690 6.28538 6.39032 6.46229 6.65966 6.76642 6.86609 6.94231 7.03961 7.22537 7.42800 7.58725 7.73947 8.01061 8.07255 8.36042 8.90541 9.21108 9.54198 11.01190 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025913 B = 0.013401 C = 0.010272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.270064 B = 2088.934483 C = 2725.239745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.067 3.933 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.517 4.517 8 H 0.055 0.945 9 C 0.044 3.956 10 H 0.049 0.951 11 C -0.121 4.121 12 C -0.112 4.112 13 C -0.127 4.127 14 C -0.125 4.125 15 C 0.168 3.832 16 H 0.099 0.901 17 N -0.104 5.104 18 N -0.259 5.259 19 C -0.065 4.065 20 C -0.052 4.052 21 N -0.296 5.296 22 H 0.261 0.739 23 H 0.089 0.911 24 H 0.065 0.935 25 H 0.045 0.955 26 H 0.043 0.957 27 H 0.085 0.915 28 H 0.044 0.956 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.183 0.817 32 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 -7.841 -3.241 9.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.135 4.135 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.555 4.555 8 H 0.073 0.927 9 C 0.025 3.975 10 H 0.067 0.933 11 C -0.159 4.159 12 C -0.150 4.150 13 C -0.164 4.164 14 C -0.164 4.164 15 C 0.068 3.932 16 H 0.117 0.883 17 N -0.007 5.007 18 N -0.101 5.101 19 C -0.245 4.245 20 C -0.233 4.233 21 N -0.138 5.138 22 H 0.071 0.929 23 H 0.107 0.893 24 H 0.084 0.916 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.103 0.897 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.101 0.899 31 H 0.200 0.800 32 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 2.242 -7.790 -2.103 8.374 hybrid contribution 1.108 1.117 -0.846 1.786 sum 3.350 -6.673 -2.949 8.028 Atomic orbital electron populations 1.69874 1.05788 1.26503 1.50316 1.24878 0.94806 0.98964 0.94823 0.86620 0.79957 0.83503 0.78148 1.20744 1.21139 1.19906 1.21084 0.92842 0.90324 1.51240 0.92697 1.19051 0.91897 0.90066 0.96490 0.93273 1.21810 0.99706 0.95149 0.99222 1.21535 0.97171 0.96634 0.99654 1.21750 0.98335 0.97728 0.98613 1.21893 0.98767 0.95431 1.00318 1.22137 0.91638 0.98356 0.81060 0.88276 1.48229 1.01855 1.45199 1.05450 1.74010 1.27132 1.17232 0.91756 1.24656 0.89288 1.09566 1.00954 1.24477 1.01023 1.08977 0.88796 1.73967 0.96705 1.18659 1.24440 0.92941 0.89251 0.91630 0.93583 0.93823 0.89720 0.93760 0.92873 0.89944 0.79987 0.80001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.02 11.32 55.43 0.63 -24.40 16 2 C 0.07 1.86 5.30 -17.82 -0.09 1.76 16 3 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 4 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.12 8.19 -34.44 -0.28 -14.40 16 8 H 0.05 1.56 7.67 -52.49 -0.40 1.16 16 9 C 0.04 1.07 1.93 -91.77 -0.18 0.89 16 10 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 11 C -0.12 -2.85 4.69 -26.73 -0.13 -2.98 16 12 C -0.11 -2.19 5.92 -26.73 -0.16 -2.35 16 13 C -0.13 -2.23 5.64 -26.73 -0.15 -2.38 16 14 C -0.13 -2.17 5.64 -26.71 -0.15 -2.32 16 15 C 0.17 3.48 2.96 -67.90 -0.20 3.28 16 16 H 0.10 2.02 8.14 -51.93 -0.42 1.60 16 17 N -0.10 -2.21 3.22 -4.87 -0.02 -2.22 16 18 N -0.26 -5.29 6.06 30.68 0.19 -5.10 16 19 C -0.06 -1.12 12.20 -17.21 -0.21 -1.33 16 20 C -0.05 -0.90 12.20 -17.21 -0.21 -1.11 16 21 N -0.30 -6.12 12.05 30.68 0.37 -5.75 16 22 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 23 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 24 H 0.07 1.62 5.47 -51.93 -0.28 1.33 16 25 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.59 5.45 -51.93 -0.28 1.31 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.18 2.42 8.06 -52.49 -0.42 2.00 16 32 H 0.18 2.37 8.06 -52.49 -0.42 1.95 16 LS Contribution 254.23 15.07 3.83 3.83 Total: -1.00 -29.77 254.23 -6.01 -35.77 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -4.22 Total: 2.07 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -1.76 Total: -20.94 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 1.17 Total: -37.47 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -29.77 -6.01 -35.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889059.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.788 kcal (2) G-P(sol) polarization free energy of solvation -29.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds