Wall clock time and date at job start Mon Mar 30 2020 03:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99977 * 2 1 4 4 H 1.48505 * 109.46998 * 270.00060 * 3 2 1 5 5 H 1.48499 * 109.47094 * 30.00062 * 3 2 1 6 6 H 1.48498 * 109.47121 * 150.00160 * 3 2 1 7 7 C 1.37880 * 120.00246 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99755 * 359.97438 * 7 2 1 10 10 H 1.08992 * 109.47284 * 300.00393 * 9 7 2 11 11 C 1.53002 * 109.46958 * 60.00311 * 9 7 2 12 12 C 1.52997 * 109.46978 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.47164 * 299.99874 * 12 11 9 14 14 C 1.52997 * 109.47127 * 59.99836 * 13 12 11 15 15 C 1.52996 * 109.46990 * 179.97438 * 9 7 2 16 16 H 1.09004 * 109.47368 * 60.00232 * 15 9 7 17 17 N 1.46500 * 109.47368 * 300.00176 * 15 9 7 18 18 N 1.28601 * 124.61855 * 299.69909 * 17 15 9 19 19 C 1.31384 * 108.71624 * 179.82991 * 18 17 15 20 20 C 1.39678 * 105.89907 * 0.41308 * 19 18 17 21 21 N 1.28599 * 124.61767 * 119.99971 * 17 15 9 22 22 H 0.96991 * 120.00061 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47097 * 299.99808 * 11 9 7 24 24 H 1.09001 * 109.47142 * 59.99773 * 11 9 7 25 25 H 1.09001 * 109.47375 * 59.99908 * 12 11 9 26 26 H 1.09000 * 109.47140 * 179.97438 * 12 11 9 27 27 H 1.08998 * 109.46505 * 299.99708 * 13 12 11 28 28 H 1.08996 * 109.46884 * 180.02562 * 13 12 11 29 29 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 30 30 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 31 31 H 1.08001 * 127.04881 * 180.16403 * 19 18 17 32 32 H 1.08001 * 127.04329 * 179.76869 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2495 12 6 -0.3944 -3.9046 -1.2492 13 6 0.5994 -5.0680 -1.2495 14 6 1.4795 -4.9872 -0.0006 15 6 2.2453 -3.6620 -0.0018 16 1 2.8727 -3.6047 0.8877 17 7 3.0867 -3.5839 -1.1986 18 7 2.6459 -3.6295 -2.4058 19 6 3.6639 -3.5297 -3.2304 20 6 4.8001 -3.4254 -2.4247 21 7 4.3672 -3.4659 -1.1849 22 1 -0.4850 0.8400 0.0004 23 1 -0.3373 -1.7514 -1.2491 24 1 0.9974 -2.5220 -2.1397 25 1 -1.0208 -3.9621 -0.3590 26 1 -1.0217 -3.9620 -2.1388 27 1 1.2257 -5.0104 -2.1397 28 1 0.0540 -6.0117 -1.2497 29 1 2.1878 -5.8157 -0.0010 30 1 0.8531 -5.0447 0.8896 31 1 3.6296 -3.5322 -4.3098 32 1 5.8245 -3.3305 -2.7536 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260889059.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:19 Heat of formation + Delta-G solvation = 85.328318 kcal Electronic energy + Delta-G solvation = -15911.931070 eV Core-core repulsion = 13488.289164 eV Total energy + Delta-G solvation = -2423.641906 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.26709 -39.35261 -34.96630 -33.70676 -32.94323 -31.34329 -30.43929 -26.87403 -24.38454 -23.48019 -22.90426 -21.94015 -20.53233 -18.54243 -17.43771 -17.10572 -16.65069 -16.06359 -15.40481 -15.38097 -14.69072 -14.49797 -14.07094 -13.53113 -13.21049 -12.97083 -12.79946 -12.60647 -12.39231 -12.20631 -11.93223 -11.86523 -11.66777 -10.95091 -10.86550 -10.84070 -10.47381 -10.39105 -9.84404 -8.14320 -6.27161 1.24886 1.31959 1.33859 1.43230 1.75326 1.85339 2.36357 3.12843 3.55088 3.92432 4.03848 4.13053 4.35743 4.50197 4.63244 4.66721 4.73061 4.83001 4.90571 4.94449 5.15573 5.20779 5.36844 5.38414 5.53502 5.54925 5.65825 5.72114 5.94839 6.08655 6.18933 6.40786 6.79959 7.39450 7.76792 8.88816 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025913 B = 0.013401 C = 0.010272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.270064 B = 2088.934483 C = 2725.239745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.022 3.978 3 Si 0.943 3.057 4 H -0.281 1.281 5 H -0.277 1.277 6 H -0.275 1.275 7 C -0.527 4.527 8 H 0.037 0.963 9 C 0.045 3.955 10 H 0.028 0.972 11 C -0.112 4.112 12 C -0.106 4.106 13 C -0.120 4.120 14 C -0.119 4.119 15 C 0.169 3.831 16 H 0.093 0.907 17 N -0.124 5.124 18 N -0.284 5.284 19 C -0.062 4.062 20 C -0.043 4.043 21 N -0.330 5.330 22 H 0.261 0.739 23 H 0.052 0.948 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.097 0.903 31 H 0.222 0.778 32 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.951 -8.852 -4.132 10.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.177 4.177 3 Si 0.769 3.231 4 H -0.208 1.208 5 H -0.202 1.202 6 H -0.199 1.199 7 C -0.565 4.565 8 H 0.056 0.944 9 C 0.025 3.975 10 H 0.046 0.954 11 C -0.150 4.150 12 C -0.144 4.144 13 C -0.157 4.157 14 C -0.157 4.157 15 C 0.069 3.931 16 H 0.111 0.889 17 N -0.026 5.026 18 N -0.126 5.126 19 C -0.242 4.242 20 C -0.225 4.225 21 N -0.172 5.172 22 H 0.070 0.930 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.115 0.885 31 H 0.238 0.762 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 3.019 -8.806 -2.979 9.774 hybrid contribution 0.938 1.452 -0.643 1.844 sum 3.956 -7.354 -3.621 9.102 Atomic orbital electron populations 1.69989 1.06691 1.27037 1.50966 1.25536 0.95588 1.01724 0.94895 0.85790 0.78873 0.80441 0.77964 1.20760 1.20212 1.19946 1.21299 0.92170 0.92181 1.50882 0.94445 1.18913 0.92390 0.90426 0.95760 0.95389 1.21596 0.98852 0.96256 0.98345 1.21442 0.97385 0.95262 1.00278 1.21683 0.97790 0.98000 0.98258 1.21891 0.98937 0.93924 1.00964 1.21941 0.91146 0.98680 0.81379 0.88889 1.48144 1.01955 1.46976 1.05502 1.73961 1.28546 1.18128 0.91992 1.25397 0.88575 1.07695 1.02563 1.25226 1.02878 1.06689 0.87668 1.73939 0.96858 1.19965 1.26418 0.92951 0.92953 0.92840 0.93336 0.92789 0.90618 0.90644 0.91034 0.88453 0.76164 0.75979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.35 11.32 21.45 0.24 -52.10 16 2 C 0.02 1.24 5.30 84.66 0.45 1.69 16 3 Si 0.94 45.13 29.54 68.60 2.03 47.15 16 4 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 6 H -0.27 -13.03 7.11 99.48 0.71 -12.33 16 7 C -0.53 -29.44 8.19 25.60 0.21 -29.23 16 8 H 0.04 2.17 7.67 -2.91 -0.02 2.15 16 9 C 0.04 2.19 1.93 -11.54 -0.02 2.17 16 10 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 11 C -0.11 -5.37 4.69 30.59 0.14 -5.22 16 12 C -0.11 -4.03 5.92 30.60 0.18 -3.85 16 13 C -0.12 -3.94 5.64 30.60 0.17 -3.77 16 14 C -0.12 -3.90 5.64 30.61 0.17 -3.73 16 15 C 0.17 6.98 2.96 45.01 0.13 7.11 16 16 H 0.09 3.85 8.14 -2.39 -0.02 3.83 16 17 N -0.12 -5.16 3.22 -169.33 -0.54 -5.70 16 18 N -0.28 -11.26 6.06 -56.86 -0.34 -11.60 16 19 C -0.06 -2.00 12.20 85.11 1.04 -0.96 16 20 C -0.04 -1.40 12.20 85.11 1.04 -0.36 16 21 N -0.33 -13.31 12.05 -56.86 -0.69 -13.99 16 22 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 23 H 0.05 2.86 6.07 -2.39 -0.01 2.85 16 24 H 0.05 2.67 5.47 -2.39 -0.01 2.65 16 25 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 26 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.08 2.68 5.45 -2.39 -0.01 2.67 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.07 2.10 8.14 -2.39 -0.02 2.09 16 30 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.22 5.04 8.06 -2.91 -0.02 5.02 16 32 H 0.22 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -64.98 254.23 5.31 -59.66 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.10 Total: 12.74 kcal Atomic # 6 Polarization: -39.67 SS G_CDS: 3.52 Total: -36.15 kcal Atomic # 7 Polarization: -82.07 SS G_CDS: -1.33 Total: -83.40 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.15 kcal Total: -64.98 5.31 -59.66 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889059.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.990 kcal (2) G-P(sol) polarization free energy of solvation -64.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.662 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds