Wall clock time and date at job start Mon Mar 30 2020 03:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 119.99847 * 2 1 4 4 H 1.48503 * 109.47162 * 359.97438 * 3 2 1 5 5 H 1.48504 * 109.47104 * 240.00125 * 3 2 1 6 6 H 1.48498 * 109.47300 * 119.99925 * 3 2 1 7 7 C 1.37876 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00443 * 342.14036 * 7 2 1 9 9 C 1.50705 * 119.99496 * 162.14223 * 7 2 1 10 10 H 1.08999 * 109.47427 * 54.44958 * 9 7 2 11 11 C 1.53000 * 109.47231 * 294.44503 * 9 7 2 12 12 C 1.52995 * 109.47484 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47055 * 59.99966 * 12 11 9 14 14 C 1.53000 * 109.47002 * 300.00329 * 13 12 11 15 15 C 1.52992 * 109.47178 * 60.00105 * 14 13 12 16 16 H 1.08998 * 109.47148 * 179.97438 * 15 14 13 17 17 N 1.46501 * 109.47286 * 59.99702 * 15 14 13 18 18 N 1.28604 * 124.62058 * 299.69761 * 17 15 14 19 19 C 1.31373 * 108.71952 * 179.82852 * 18 17 15 20 20 C 1.39678 * 105.90058 * 0.41659 * 19 18 17 21 21 N 1.28602 * 124.61983 * 119.99710 * 17 15 14 22 22 H 0.97002 * 119.99898 * 174.67230 * 1 2 3 23 23 H 1.08999 * 109.47287 * 300.00541 * 11 9 7 24 24 H 1.09001 * 109.47075 * 60.00318 * 11 9 7 25 25 H 1.08999 * 109.46927 * 300.00303 * 12 11 9 26 26 H 1.08998 * 109.47454 * 180.02562 * 12 11 9 27 27 H 1.09002 * 109.46721 * 180.02562 * 13 12 11 28 28 H 1.08999 * 109.46977 * 60.00368 * 13 12 11 29 29 H 1.08999 * 109.47287 * 299.99850 * 14 13 12 30 30 H 1.09002 * 109.46557 * 179.97438 * 14 13 12 31 31 H 1.08000 * 127.05007 * 180.16625 * 19 18 17 32 32 H 1.08001 * 127.05115 * 179.77400 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6964 -1.2125 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 1.5036 -2.1067 0.2878 9 6 3.4571 -1.2255 -0.3997 10 1 4.0169 -0.5143 0.2077 11 6 3.5875 -0.8484 -1.8767 12 6 5.0621 -0.8810 -2.2833 13 6 5.6202 -2.2888 -2.0652 14 6 5.4899 -2.6659 -0.5882 15 6 4.0153 -2.6333 -0.1817 16 1 3.9224 -2.9025 0.8704 17 7 3.2625 -3.5889 -0.9980 18 7 3.1704 -3.5415 -2.2799 19 6 2.4278 -4.5460 -2.6867 20 6 2.0478 -5.2334 -1.5317 21 7 2.5992 -4.5864 -0.5300 22 1 -0.4850 -0.8364 -0.0780 23 1 3.0277 -1.5596 -2.4841 24 1 3.1895 0.1544 -2.0322 25 1 5.6222 -0.1700 -1.6759 26 1 5.1550 -0.6119 -3.3354 27 1 6.6709 -2.3118 -2.3545 28 1 5.0601 -2.9997 -2.6726 29 1 6.0500 -1.9549 0.0192 30 1 5.8871 -3.6690 -0.4330 31 1 2.1620 -4.7881 -3.7051 32 1 1.4283 -6.1161 -1.4739 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260889060.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:22 Heat of formation + Delta-G solvation = 82.588707 kcal Electronic energy + Delta-G solvation = -15956.516504 eV Core-core repulsion = 13532.755799 eV Total energy + Delta-G solvation = -2423.760705 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.36752 -39.51876 -35.03713 -33.80340 -33.05475 -31.90665 -30.54168 -26.46613 -24.41554 -23.59988 -22.82204 -21.95085 -20.61158 -19.67041 -17.51119 -17.22019 -16.65075 -15.71858 -15.51771 -15.36921 -15.04560 -14.80254 -14.31241 -13.45079 -13.19322 -13.11523 -12.89942 -12.55510 -12.47795 -12.01431 -11.92670 -11.85778 -11.46166 -11.07668 -10.93020 -10.80437 -10.54686 -10.47558 -9.96881 -8.75088 -6.37895 1.13988 1.44962 1.52259 1.66022 1.71993 1.74852 2.49984 3.04282 3.43955 3.84381 3.93754 4.01207 4.26195 4.38063 4.49658 4.56538 4.63730 4.70503 4.74181 4.85640 4.95088 5.10279 5.24911 5.28700 5.39171 5.43747 5.51875 5.61487 5.80981 5.92102 6.02520 6.21371 6.52850 7.39107 7.65624 8.59948 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.027933 B = 0.013691 C = 0.010714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.156941 B = 2044.635995 C = 2612.661685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.941 5.941 2 C -0.019 4.019 3 Si 1.079 2.921 4 H -0.296 1.296 5 H -0.237 1.237 6 H -0.257 1.257 7 C -0.595 4.595 8 H 0.008 0.992 9 C 0.014 3.986 10 H 0.056 0.944 11 C -0.131 4.131 12 C -0.109 4.109 13 C -0.122 4.122 14 C -0.120 4.120 15 C 0.172 3.828 16 H 0.090 0.910 17 N -0.124 5.124 18 N -0.281 5.281 19 C -0.061 4.061 20 C -0.047 4.047 21 N -0.333 5.333 22 H 0.246 0.754 23 H 0.061 0.939 24 H 0.041 0.959 25 H 0.067 0.933 26 H 0.064 0.936 27 H 0.082 0.918 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.224 0.776 32 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.299 -5.425 -5.170 14.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.217 4.217 3 Si 0.900 3.100 4 H -0.223 1.223 5 H -0.162 1.162 6 H -0.182 1.182 7 C -0.632 4.632 8 H 0.026 0.974 9 C -0.006 4.006 10 H 0.074 0.926 11 C -0.169 4.169 12 C -0.147 4.147 13 C -0.160 4.160 14 C -0.158 4.158 15 C 0.072 3.928 16 H 0.108 0.892 17 N -0.026 5.026 18 N -0.124 5.124 19 C -0.241 4.241 20 C -0.228 4.228 21 N -0.175 5.175 22 H 0.054 0.946 23 H 0.079 0.921 24 H 0.059 0.941 25 H 0.085 0.915 26 H 0.083 0.917 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.127 0.873 30 H 0.088 0.912 31 H 0.240 0.760 32 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 12.807 -2.923 -4.309 13.825 hybrid contribution -1.528 -2.588 -0.261 3.016 sum 11.279 -5.510 -4.570 13.359 Atomic orbital electron populations 1.70979 1.08696 1.29051 1.48931 1.27263 0.95904 1.06446 0.92045 0.83690 0.75122 0.71373 0.79811 1.22309 1.16169 1.18151 1.22087 0.96973 0.94654 1.49510 0.97376 1.19317 0.94750 0.91483 0.95092 0.92597 1.22117 0.97122 1.00393 0.97236 1.21485 0.94959 0.97146 1.01063 1.21690 1.01389 0.97649 0.95227 1.21945 0.91557 1.03101 0.99237 1.21852 0.90992 0.87433 0.92568 0.89170 1.48184 1.33607 1.18602 1.02240 1.73886 1.20150 1.21552 0.96769 1.25393 1.01828 0.94155 1.02740 1.25221 1.04893 1.04073 0.88579 1.73945 1.11246 1.01815 1.30484 0.94560 0.92069 0.94066 0.91456 0.91716 0.89911 0.91066 0.87287 0.91189 0.75989 0.76218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.93 13.69 21.45 0.29 -60.64 16 2 C -0.02 -1.14 5.33 84.65 0.45 -0.69 16 3 Si 1.08 49.48 26.37 68.60 1.81 51.29 16 4 H -0.30 -14.03 7.11 99.48 0.71 -13.33 16 5 H -0.24 -9.59 5.61 99.48 0.56 -9.03 16 6 H -0.26 -10.62 7.11 99.48 0.71 -9.92 16 7 C -0.59 -34.06 8.48 25.60 0.22 -33.84 16 8 H 0.01 0.52 7.83 -2.91 -0.02 0.50 16 9 C 0.01 0.61 1.51 -11.54 -0.02 0.59 16 10 H 0.06 2.37 6.79 -2.39 -0.02 2.35 16 11 C -0.13 -5.50 4.60 30.59 0.14 -5.36 16 12 C -0.11 -3.43 5.92 30.59 0.18 -3.25 16 13 C -0.12 -3.50 5.64 30.59 0.17 -3.33 16 14 C -0.12 -3.53 5.64 30.59 0.17 -3.36 16 15 C 0.17 6.83 2.97 44.99 0.13 6.96 16 16 H 0.09 3.69 8.14 -2.39 -0.02 3.68 16 17 N -0.12 -5.22 3.15 -169.41 -0.53 -5.76 16 18 N -0.28 -11.11 6.06 -56.87 -0.34 -11.46 16 19 C -0.06 -2.03 12.20 85.11 1.04 -0.99 16 20 C -0.05 -1.60 12.20 85.11 1.04 -0.56 16 21 N -0.33 -14.11 12.05 -56.86 -0.69 -14.79 16 22 H 0.25 16.47 8.73 -92.71 -0.81 15.66 16 23 H 0.06 2.84 5.44 -2.39 -0.01 2.83 16 24 H 0.04 1.83 4.82 -2.39 -0.01 1.82 16 25 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 26 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.07 2.31 5.47 -2.39 -0.01 2.30 16 29 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 30 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.22 5.27 8.06 -2.91 -0.02 5.24 16 32 H 0.22 5.45 8.06 -2.91 -0.02 5.43 16 Total: -1.00 -72.56 249.69 4.99 -67.57 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.92 Total: 17.60 kcal Atomic # 6 Polarization: -47.35 SS G_CDS: 3.53 Total: -43.82 kcal Atomic # 7 Polarization: -91.37 SS G_CDS: -1.27 Total: -92.64 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 1.81 Total: 51.29 kcal Total: -72.56 4.99 -67.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889060.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.160 kcal (2) G-P(sol) polarization free energy of solvation -72.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.571 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds