Wall clock time and date at job start Mon Mar 30 2020 03:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48497 * 109.47196 * 240.00130 * 3 2 1 5 5 H 1.48494 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46819 * 120.00635 * 3 2 1 7 7 C 1.37884 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99746 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47390 * 300.00241 * 9 7 2 11 11 C 1.52997 * 109.47242 * 60.00271 * 9 7 2 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.46626 * 299.99539 * 12 11 9 14 14 C 1.52997 * 109.46991 * 60.00378 * 13 12 11 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 12 16 16 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 17 17 N 1.46507 * 109.47258 * 179.97438 * 15 14 13 18 18 N 1.28598 * 124.61814 * 299.70732 * 17 15 14 19 19 C 1.31384 * 108.71545 * 179.82669 * 18 17 15 20 20 C 1.39673 * 105.90071 * 0.41405 * 19 18 17 21 21 N 1.28597 * 124.61570 * 120.00050 * 17 15 14 22 22 H 0.96996 * 119.99725 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47502 * 60.00161 * 11 9 7 24 24 H 1.09001 * 109.47289 * 299.99957 * 11 9 7 25 25 H 1.08993 * 109.46955 * 60.00011 * 12 11 9 26 26 H 1.09000 * 109.47050 * 179.97438 * 12 11 9 27 27 H 1.09002 * 109.46719 * 180.02562 * 13 12 11 28 28 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 29 29 H 1.09001 * 109.47289 * 179.97438 * 14 13 12 30 30 H 1.09000 * 109.47611 * 59.99933 * 14 13 12 31 31 H 1.07996 * 127.04820 * 180.15157 * 19 18 17 32 32 H 1.08003 * 127.05135 * 179.77517 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2495 12 6 -0.3946 -3.9047 -1.2491 13 6 0.5993 -5.0679 -1.2495 14 6 1.4793 -4.9871 -0.0005 15 6 2.2448 -3.6625 -0.0009 16 1 2.8712 -3.6050 -0.8910 17 7 3.0871 -3.5848 1.1953 18 7 2.6461 -3.6195 2.4028 19 6 3.6657 -3.5313 3.2267 20 6 4.8014 -3.4272 2.4203 21 7 4.3676 -3.4673 1.1808 22 1 -0.4849 0.8400 0.0004 23 1 0.9973 -2.5221 -2.1397 24 1 -0.3373 -1.7514 -1.2491 25 1 -1.0209 -3.9621 -0.3590 26 1 -1.0219 -3.9620 -2.1387 27 1 0.0539 -6.0117 -1.2497 28 1 1.2256 -5.0105 -2.1396 29 1 2.1871 -5.8161 -0.0005 30 1 0.8530 -5.0447 0.8897 31 1 3.6322 -3.5340 4.3062 32 1 5.8261 -3.3334 2.7484 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260889062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:27 Heat of formation + Delta-G solvation = 87.993029 kcal Electronic energy + Delta-G solvation = -15569.959762 eV Core-core repulsion = 13146.433406 eV Total energy + Delta-G solvation = -2423.526356 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.74685 -37.82525 -32.98447 -32.51823 -31.61299 -29.61687 -28.67657 -24.97722 -22.92945 -22.09617 -21.33761 -20.20063 -18.78273 -16.75445 -16.34333 -15.54415 -14.67576 -14.38655 -14.14056 -13.66566 -13.30697 -13.11728 -12.29350 -12.09374 -11.67242 -11.03965 -10.93930 -10.78940 -10.66246 -10.54973 -10.34050 -10.01811 -9.95027 -9.73141 -9.52596 -9.44839 -8.87967 -8.46762 -8.30202 -6.04728 -4.11190 2.70885 3.18017 3.20894 3.30272 3.33950 3.38439 4.39857 4.90829 5.25370 5.33455 5.34573 5.51309 5.64877 5.89333 5.92296 5.96721 6.12819 6.20778 6.27904 6.39910 6.50780 6.65942 6.74881 6.78289 6.88571 7.09725 7.18057 7.58558 7.65681 7.87520 8.01140 8.29432 8.90128 9.18801 9.53734 11.00893 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.020199 B = 0.014451 C = 0.009285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.858742 B = 1937.054147 C = 3014.753208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.054 0.946 9 C 0.048 3.952 10 H 0.044 0.956 11 C -0.108 4.108 12 C -0.125 4.125 13 C -0.109 4.109 14 C -0.124 4.124 15 C 0.171 3.829 16 H 0.100 0.900 17 N -0.110 5.110 18 N -0.273 5.273 19 C -0.054 4.054 20 C -0.053 4.053 21 N -0.294 5.294 22 H 0.262 0.738 23 H 0.039 0.961 24 H 0.101 0.899 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.185 0.815 32 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.923 -7.887 0.830 8.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.072 0.928 9 C 0.029 3.971 10 H 0.062 0.938 11 C -0.147 4.147 12 C -0.162 4.162 13 C -0.147 4.147 14 C -0.163 4.163 15 C 0.071 3.929 16 H 0.118 0.882 17 N -0.012 5.012 18 N -0.115 5.115 19 C -0.236 4.236 20 C -0.234 4.234 21 N -0.136 5.136 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.119 0.881 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.202 0.798 32 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 1.993 -7.824 -0.290 8.079 hybrid contribution 1.195 1.119 0.945 1.891 sum 3.188 -6.705 0.655 7.453 Atomic orbital electron populations 1.69844 1.05785 1.26659 1.50313 1.24872 0.94822 0.98959 0.94795 0.86669 0.79653 0.83122 0.78697 1.20182 1.21179 1.20409 1.21040 0.92795 0.90342 1.51265 0.92798 1.19025 0.91882 0.89986 0.96251 0.93794 1.21633 0.99467 0.96014 0.97587 1.21702 0.97658 0.96136 1.00723 1.21465 0.97699 0.98796 0.96772 1.21885 0.98805 0.95509 1.00113 1.22094 0.91619 0.98259 0.80902 0.88225 1.48303 1.01996 1.45312 1.05585 1.73957 1.28274 1.17553 0.91732 1.24561 0.88986 1.09133 1.00872 1.24516 1.01106 1.08967 0.88764 1.73967 0.96701 1.18459 1.24469 0.92844 0.94255 0.88096 0.92468 0.93192 0.92379 0.92166 0.92807 0.90729 0.79812 0.79838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.04 11.32 55.43 0.63 -24.41 16 2 C 0.07 1.87 5.30 -17.82 -0.09 1.77 16 3 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.52 -14.20 8.19 -34.44 -0.28 -14.49 16 8 H 0.05 1.54 7.67 -52.49 -0.40 1.14 16 9 C 0.05 1.17 1.66 -91.77 -0.15 1.02 16 10 H 0.04 1.20 8.13 -51.93 -0.42 0.78 16 11 C -0.11 -2.40 4.98 -26.73 -0.13 -2.54 16 12 C -0.12 -2.23 5.92 -26.73 -0.16 -2.39 16 13 C -0.11 -1.71 5.92 -26.73 -0.16 -1.87 16 14 C -0.12 -2.19 5.37 -26.73 -0.14 -2.33 16 15 C 0.17 3.60 2.46 -67.93 -0.17 3.43 16 16 H 0.10 2.09 8.14 -51.93 -0.42 1.67 16 17 N -0.11 -2.40 3.22 -4.89 -0.02 -2.41 16 18 N -0.27 -5.89 11.69 30.67 0.36 -5.53 16 19 C -0.05 -0.98 12.20 -17.21 -0.21 -1.19 16 20 C -0.05 -0.93 12.20 -17.21 -0.21 -1.14 16 21 N -0.29 -6.21 12.05 30.68 0.37 -5.84 16 22 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 23 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.10 2.54 6.07 -51.93 -0.32 2.22 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 31 H 0.18 2.49 8.06 -52.49 -0.42 2.07 16 32 H 0.18 2.41 8.06 -52.48 -0.42 1.99 16 LS Contribution 264.76 15.07 3.99 3.99 Total: -1.00 -30.21 264.76 -5.90 -36.12 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -4.50 Total: 0.99 kcal Atomic # 6 Polarization: -18.00 SS G_CDS: -1.71 Total: -19.71 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 1.34 Total: -38.19 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.21 -5.90 -36.12 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.108 kcal (2) G-P(sol) polarization free energy of solvation -30.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds