Wall clock time and date at job start Mon Mar 30 2020 03:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86790 * 120.00046 * 2 1 4 4 H 1.48497 * 109.47351 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46985 * 120.00028 * 3 2 1 6 6 H 1.48498 * 109.47371 * 239.99862 * 3 2 1 7 7 C 1.37872 * 119.99569 * 180.27565 * 2 1 3 8 8 H 1.08005 * 120.00261 * 341.81867 * 7 2 1 9 9 C 1.50699 * 120.00109 * 161.81401 * 7 2 1 10 10 C 1.53001 * 109.47569 * 294.45109 * 9 7 2 11 11 C 1.52993 * 109.47452 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47312 * 59.99457 * 11 10 9 13 13 N 1.46504 * 109.47041 * 60.00278 * 12 11 10 14 14 N 1.28593 * 124.61522 * 299.69709 * 13 12 11 15 15 C 1.31390 * 108.71693 * 179.83141 * 14 13 12 16 16 C 1.39674 * 105.89267 * 0.41247 * 15 14 13 17 17 N 1.28603 * 124.61681 * 119.99899 * 13 12 11 18 18 C 1.52999 * 109.47098 * 299.99987 * 12 11 10 19 19 C 1.52998 * 109.47324 * 174.44488 * 9 7 2 20 20 H 0.96998 * 120.00526 * 174.65737 * 1 2 3 21 21 H 1.09006 * 109.47048 * 54.44727 * 9 7 2 22 22 H 1.09006 * 109.46624 * 299.99878 * 10 9 7 23 23 H 1.09004 * 109.47050 * 59.98958 * 10 9 7 24 24 H 1.09004 * 109.46664 * 299.99624 * 11 10 9 25 25 H 1.09005 * 109.47194 * 179.97438 * 11 10 9 26 26 H 1.09007 * 109.47307 * 179.97438 * 12 11 10 27 27 H 1.07997 * 127.05307 * 180.16360 * 15 14 13 28 28 H 1.08006 * 127.04824 * 179.76704 * 16 15 14 29 29 H 1.08991 * 109.47659 * 299.99936 * 18 12 11 30 30 H 1.09000 * 109.46709 * 179.97438 * 18 12 11 31 31 H 1.08996 * 109.47263 * 299.99945 * 19 9 7 32 32 H 1.08995 * 109.47252 * 60.00380 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1029 1.6963 -1.2124 7 6 2.0044 -1.1940 -0.0057 8 1 1.5048 -2.1074 0.2817 9 6 3.4550 -1.2248 -0.4132 10 6 3.5782 -0.8441 -1.8900 11 6 5.0508 -0.8747 -2.3034 12 6 5.6110 -2.2825 -2.0913 13 7 4.8551 -3.2368 -2.9062 14 7 3.5917 -3.4505 -2.7974 15 6 3.2405 -4.3602 -3.6780 16 6 4.4118 -4.7113 -4.3530 17 7 5.3656 -3.9789 -3.8242 18 6 5.4879 -2.6632 -0.6145 19 6 4.0145 -2.6329 -0.2011 20 1 -0.4851 -0.8363 -0.0782 21 1 4.0178 -0.5150 0.1931 22 1 3.0153 -1.5538 -2.4963 23 1 3.1794 0.1591 -2.0410 24 1 5.6133 -0.1647 -1.6970 25 1 5.1385 -0.6039 -3.3557 26 1 6.6602 -2.3045 -2.3863 27 1 2.2501 -4.7580 -3.8430 28 1 4.5127 -5.4363 -5.1473 29 1 6.0503 -1.9533 -0.0081 30 1 5.8866 -3.6663 -0.4635 31 1 3.9269 -2.9041 0.8509 32 1 3.4518 -3.3427 -0.8074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260889098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:30 Heat of formation + Delta-G solvation = 105.866001 kcal Electronic energy + Delta-G solvation = -15704.174297 eV Core-core repulsion = 13281.422971 eV Total energy + Delta-G solvation = -2422.751326 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.24462 -38.03075 -33.45199 -32.10513 -31.52496 -30.22568 -29.32120 -24.73838 -22.50775 -22.40493 -21.99404 -20.14921 -19.07978 -17.37936 -16.25154 -16.04503 -15.32830 -14.48048 -14.15731 -13.64887 -13.27298 -13.24497 -12.66369 -11.95107 -11.78627 -11.51994 -11.31987 -11.16323 -10.71502 -10.58449 -10.35706 -10.08755 -9.77007 -9.62859 -9.37535 -8.98554 -8.88270 -8.59947 -8.15259 -6.32143 -3.92602 2.25169 2.69022 2.83401 3.42258 3.46622 3.65482 4.48559 4.58457 4.99469 5.08079 5.12912 5.35004 5.37643 5.58191 5.74665 5.84483 5.96063 6.00383 6.17856 6.29044 6.30389 6.47875 6.54495 6.59503 6.92877 7.07785 7.15381 7.24910 7.48347 7.78278 8.31973 8.50133 8.77658 9.03020 9.73605 11.04822 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038499 B = 0.010024 C = 0.009228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.114662 B = 2792.703211 C = 3033.612934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.029 3.971 3 Si 1.041 2.959 4 H -0.289 1.289 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.585 4.585 8 H 0.054 0.946 9 C 0.030 3.970 10 C -0.133 4.133 11 C -0.133 4.133 12 C 0.171 3.829 13 N -0.140 5.140 14 N -0.241 5.241 15 C -0.053 4.053 16 C -0.040 4.040 17 N -0.306 5.306 18 C -0.130 4.130 19 C -0.112 4.112 20 H 0.267 0.733 21 H 0.013 0.987 22 H 0.082 0.918 23 H 0.059 0.941 24 H 0.082 0.918 25 H 0.056 0.944 26 H 0.104 0.896 27 H 0.190 0.810 28 H 0.190 0.810 29 H 0.084 0.916 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.001 -5.612 -6.239 13.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.175 4.175 3 Si 0.870 3.130 4 H -0.215 1.215 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.623 4.623 8 H 0.072 0.928 9 C 0.011 3.989 10 C -0.170 4.170 11 C -0.172 4.172 12 C 0.072 3.928 13 N -0.043 5.043 14 N -0.082 5.082 15 C -0.234 4.234 16 C -0.222 4.222 17 N -0.147 5.147 18 C -0.169 4.169 19 C -0.149 4.149 20 H 0.076 0.924 21 H 0.031 0.969 22 H 0.100 0.900 23 H 0.077 0.923 24 H 0.100 0.900 25 H 0.074 0.926 26 H 0.122 0.878 27 H 0.207 0.793 28 H 0.207 0.793 29 H 0.102 0.898 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 11.517 -3.073 -5.396 13.085 hybrid contribution -0.312 -2.392 -0.722 2.518 sum 11.206 -5.465 -6.118 13.887 Atomic orbital electron populations 1.70822 1.07204 1.30310 1.46320 1.25706 0.96118 1.02284 0.93411 0.84129 0.75474 0.76362 0.77027 1.21521 1.21232 1.20129 1.21956 0.95012 0.96090 1.49260 0.92825 1.18860 0.97086 0.91761 0.91148 1.22337 0.91482 1.02287 1.00942 1.22041 1.01138 0.92838 1.01173 1.21759 0.93836 0.86946 0.90299 1.48449 1.03436 1.28166 1.24232 1.74446 0.97284 1.15711 1.20790 1.24937 1.01340 0.99748 0.97410 1.24631 0.89811 1.03455 1.04282 1.73960 1.28761 1.07078 1.04930 1.22012 1.01326 1.01123 0.92444 1.21739 0.91711 1.01318 1.00173 0.92354 0.96910 0.90016 0.92304 0.89985 0.92567 0.87791 0.79284 0.79349 0.89794 0.92533 0.93202 0.90082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.45 13.70 55.43 0.76 -27.69 16 2 C 0.03 0.84 5.33 -17.82 -0.09 0.75 16 3 Si 1.04 25.40 26.37 -169.99 -4.48 20.91 16 4 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.15 5.61 56.52 0.32 -5.83 16 7 C -0.59 -16.58 8.82 -34.44 -0.30 -16.89 16 8 H 0.05 1.66 7.99 -52.48 -0.42 1.24 16 9 C 0.03 0.71 1.68 -91.77 -0.15 0.56 16 10 C -0.13 -2.91 4.60 -26.73 -0.12 -3.03 16 11 C -0.13 -2.30 5.64 -26.74 -0.15 -2.45 16 12 C 0.17 2.76 3.57 -67.93 -0.24 2.51 16 13 N -0.14 -2.48 3.70 -4.89 -0.02 -2.50 16 14 N -0.24 -4.60 6.06 30.68 0.19 -4.41 16 15 C -0.05 -0.83 12.20 -17.21 -0.21 -1.04 16 16 C -0.04 -0.56 12.19 -17.21 -0.21 -0.77 16 17 N -0.31 -5.08 12.05 30.67 0.37 -4.71 16 18 C -0.13 -2.13 5.64 -26.70 -0.15 -2.28 16 19 C -0.11 -2.31 4.86 -26.70 -0.13 -2.44 16 20 H 0.27 8.32 8.73 -40.82 -0.36 7.96 16 21 H 0.01 0.30 6.79 -51.93 -0.35 -0.05 16 22 H 0.08 1.92 5.47 -51.93 -0.28 1.63 16 23 H 0.06 1.37 4.82 -51.93 -0.25 1.12 16 24 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.10 1.39 8.14 -51.92 -0.42 0.97 16 27 H 0.19 2.36 8.06 -52.49 -0.42 1.94 16 28 H 0.19 1.84 8.06 -52.48 -0.42 1.42 16 29 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.79 5.45 -51.93 -0.28 1.51 16 LS Contribution 250.45 15.07 3.77 3.77 Total: -1.00 -32.24 250.45 -5.39 -37.63 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.21 Total: 2.06 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -1.77 Total: -25.07 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 1.30 Total: -39.31 kcal Atomic # 14 Polarization: 25.40 SS G_CDS: -4.48 Total: 20.91 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -32.24 -5.39 -37.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.498 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds