Wall clock time and date at job start Mon Mar 30 2020 03:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86790 * 120.00046 * 2 1 4 4 H 1.48497 * 109.47351 * 0.02562 * 3 2 1 5 5 H 1.48506 * 109.46985 * 120.00028 * 3 2 1 6 6 H 1.48498 * 109.47371 * 239.99862 * 3 2 1 7 7 C 1.37872 * 119.99569 * 180.27565 * 2 1 3 8 8 H 1.08005 * 120.00261 * 341.81867 * 7 2 1 9 9 C 1.50699 * 120.00109 * 161.81401 * 7 2 1 10 10 C 1.53001 * 109.47569 * 294.45109 * 9 7 2 11 11 C 1.52993 * 109.47452 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47312 * 59.99457 * 11 10 9 13 13 N 1.46504 * 109.47041 * 60.00278 * 12 11 10 14 14 N 1.28593 * 124.61522 * 299.69709 * 13 12 11 15 15 C 1.31390 * 108.71693 * 179.83141 * 14 13 12 16 16 C 1.39674 * 105.89267 * 0.41247 * 15 14 13 17 17 N 1.28603 * 124.61681 * 119.99899 * 13 12 11 18 18 C 1.52999 * 109.47098 * 299.99987 * 12 11 10 19 19 C 1.52998 * 109.47324 * 174.44488 * 9 7 2 20 20 H 0.96998 * 120.00526 * 174.65737 * 1 2 3 21 21 H 1.09006 * 109.47048 * 54.44727 * 9 7 2 22 22 H 1.09006 * 109.46624 * 299.99878 * 10 9 7 23 23 H 1.09004 * 109.47050 * 59.98958 * 10 9 7 24 24 H 1.09004 * 109.46664 * 299.99624 * 11 10 9 25 25 H 1.09005 * 109.47194 * 179.97438 * 11 10 9 26 26 H 1.09007 * 109.47307 * 179.97438 * 12 11 10 27 27 H 1.07997 * 127.05307 * 180.16360 * 15 14 13 28 28 H 1.08006 * 127.04824 * 179.76704 * 16 15 14 29 29 H 1.08991 * 109.47659 * 299.99936 * 18 12 11 30 30 H 1.09000 * 109.46709 * 179.97438 * 18 12 11 31 31 H 1.08996 * 109.47263 * 299.99945 * 19 9 7 32 32 H 1.08995 * 109.47252 * 60.00380 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6963 1.2126 6 1 3.1029 1.6963 -1.2124 7 6 2.0044 -1.1940 -0.0057 8 1 1.5048 -2.1074 0.2817 9 6 3.4550 -1.2248 -0.4132 10 6 3.5782 -0.8441 -1.8900 11 6 5.0508 -0.8747 -2.3034 12 6 5.6110 -2.2825 -2.0913 13 7 4.8551 -3.2368 -2.9062 14 7 3.5917 -3.4505 -2.7974 15 6 3.2405 -4.3602 -3.6780 16 6 4.4118 -4.7113 -4.3530 17 7 5.3656 -3.9789 -3.8242 18 6 5.4879 -2.6632 -0.6145 19 6 4.0145 -2.6329 -0.2011 20 1 -0.4851 -0.8363 -0.0782 21 1 4.0178 -0.5150 0.1931 22 1 3.0153 -1.5538 -2.4963 23 1 3.1794 0.1591 -2.0410 24 1 5.6133 -0.1647 -1.6970 25 1 5.1385 -0.6039 -3.3557 26 1 6.6602 -2.3045 -2.3863 27 1 2.2501 -4.7580 -3.8430 28 1 4.5127 -5.4363 -5.1473 29 1 6.0503 -1.9533 -0.0081 30 1 5.8866 -3.6663 -0.4635 31 1 3.9269 -2.9041 0.8509 32 1 3.4518 -3.3427 -0.8074 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260889098.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:30 Heat of formation + Delta-G solvation = 84.059071 kcal Electronic energy + Delta-G solvation = -15705.119916 eV Core-core repulsion = 13281.422971 eV Total energy + Delta-G solvation = -2423.696945 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.45451 -39.51636 -35.31502 -33.56971 -33.04708 -31.70727 -30.82971 -26.55633 -23.96358 -23.62977 -23.51481 -21.70451 -20.60148 -19.56182 -17.51495 -17.35231 -16.70912 -15.80519 -15.52656 -15.33793 -15.00069 -14.70558 -14.45051 -13.51051 -13.25199 -13.11667 -12.90433 -12.47373 -12.33060 -12.18369 -11.93557 -11.76870 -11.54124 -11.09644 -10.98044 -10.68631 -10.55083 -10.36553 -10.08197 -8.65185 -6.26358 1.02384 1.46294 1.53633 1.55123 1.68885 1.73812 2.55370 3.11091 3.34933 3.70588 3.86898 3.94143 4.21104 4.35537 4.42147 4.59484 4.62567 4.65946 4.75757 4.81448 4.94064 5.02273 5.08220 5.20170 5.36643 5.47227 5.53094 5.70081 5.87779 6.03851 6.12293 6.30033 6.65670 7.49760 7.56932 8.69837 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.038499 B = 0.010024 C = 0.009228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.114662 B = 2792.703211 C = 3033.612934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C -0.027 4.027 3 Si 1.082 2.918 4 H -0.297 1.297 5 H -0.262 1.262 6 H -0.239 1.239 7 C -0.588 4.588 8 H 0.005 0.995 9 C 0.031 3.969 10 C -0.130 4.130 11 C -0.126 4.126 12 C 0.167 3.833 13 N -0.152 5.152 14 N -0.289 5.289 15 C -0.062 4.062 16 C -0.026 4.026 17 N -0.318 5.318 18 C -0.120 4.120 19 C -0.111 4.111 20 H 0.248 0.752 21 H 0.024 0.976 22 H 0.060 0.940 23 H 0.041 0.959 24 H 0.110 0.890 25 H 0.066 0.934 26 H 0.141 0.859 27 H 0.209 0.791 28 H 0.232 0.768 29 H 0.112 0.888 30 H 0.069 0.931 31 H 0.036 0.964 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.323 -5.250 -7.350 16.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.585 5.585 2 C -0.223 4.223 3 Si 0.903 3.097 4 H -0.224 1.224 5 H -0.187 1.187 6 H -0.163 1.163 7 C -0.626 4.626 8 H 0.024 0.976 9 C 0.012 3.988 10 C -0.168 4.168 11 C -0.165 4.165 12 C 0.068 3.932 13 N -0.054 5.054 14 N -0.131 5.131 15 C -0.243 4.243 16 C -0.208 4.208 17 N -0.159 5.159 18 C -0.159 4.159 19 C -0.149 4.149 20 H 0.057 0.943 21 H 0.042 0.958 22 H 0.078 0.922 23 H 0.060 0.940 24 H 0.128 0.872 25 H 0.085 0.915 26 H 0.159 0.841 27 H 0.226 0.774 28 H 0.248 0.752 29 H 0.130 0.870 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 14.867 -2.740 -6.505 16.458 hybrid contribution -1.455 -2.675 -0.395 3.070 sum 13.413 -5.414 -6.900 16.026 Atomic orbital electron populations 1.70964 1.08638 1.29183 1.49681 1.27268 0.96031 1.06463 0.92540 0.83648 0.75011 0.71473 0.79537 1.22365 1.18662 1.16299 1.22242 0.97916 0.94137 1.48312 0.97625 1.18820 0.93672 0.93865 0.92440 1.22114 0.95115 1.00416 0.99111 1.21979 0.97591 0.94620 1.02263 1.21941 0.95482 0.85909 0.89862 1.48605 1.03033 1.28887 1.24907 1.74397 0.98556 1.17503 1.22607 1.25436 1.02941 0.99071 0.96881 1.25303 0.88410 1.02940 1.04099 1.73941 1.29367 1.07516 1.05077 1.21937 0.97735 1.02892 0.93295 1.21614 0.95120 0.99009 0.99156 0.94345 0.95757 0.92187 0.94030 0.87168 0.91536 0.84103 0.77386 0.75212 0.87011 0.91265 0.94510 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.75 13.70 21.45 0.29 -61.46 16 2 C -0.03 -1.60 5.33 84.65 0.45 -1.15 16 3 Si 1.08 50.51 26.37 68.60 1.81 52.31 16 4 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 5 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 6 H -0.24 -9.73 5.61 99.48 0.56 -9.18 16 7 C -0.59 -34.54 8.82 25.60 0.23 -34.32 16 8 H 0.01 0.35 7.99 -2.91 -0.02 0.33 16 9 C 0.03 1.43 1.68 -11.54 -0.02 1.41 16 10 C -0.13 -5.51 4.60 30.59 0.14 -5.37 16 11 C -0.13 -3.88 5.64 30.59 0.17 -3.71 16 12 C 0.17 4.76 3.57 44.99 0.16 4.92 16 13 N -0.15 -5.03 3.70 -169.39 -0.63 -5.66 16 14 N -0.29 -10.86 6.06 -56.86 -0.34 -11.20 16 15 C -0.06 -1.87 12.20 85.11 1.04 -0.83 16 16 C -0.03 -0.65 12.19 85.11 1.04 0.39 16 17 N -0.32 -9.62 12.05 -56.87 -0.69 -10.30 16 18 C -0.12 -3.53 5.64 30.61 0.17 -3.36 16 19 C -0.11 -4.55 4.86 30.61 0.15 -4.40 16 20 H 0.25 16.51 8.73 -92.71 -0.81 15.70 16 21 H 0.02 1.08 6.79 -2.38 -0.02 1.06 16 22 H 0.06 2.83 5.47 -2.38 -0.01 2.81 16 23 H 0.04 1.86 4.82 -2.39 -0.01 1.85 16 24 H 0.11 2.78 8.14 -2.38 -0.02 2.76 16 25 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 26 H 0.14 3.02 8.14 -2.38 -0.02 3.00 16 27 H 0.21 5.04 8.06 -2.91 -0.02 5.02 16 28 H 0.23 3.54 8.06 -2.91 -0.02 3.52 16 29 H 0.11 2.67 8.14 -2.39 -0.02 2.65 16 30 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 2.77 5.45 -2.39 -0.01 2.75 16 Total: -1.00 -73.98 250.45 4.90 -69.08 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.92 Total: 13.63 kcal Atomic # 6 Polarization: -49.93 SS G_CDS: 3.53 Total: -46.40 kcal Atomic # 7 Polarization: -87.26 SS G_CDS: -1.36 Total: -88.62 kcal Atomic # 14 Polarization: 50.51 SS G_CDS: 1.81 Total: 52.31 kcal Total: -73.98 4.90 -69.08 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260889098.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.139 kcal (2) G-P(sol) polarization free energy of solvation -73.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds