Wall clock time and date at job start Mon Mar 30 2020 03:18:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86793 * 120.00271 * 2 1 4 4 H 1.48494 * 109.47000 * 269.99400 * 3 2 1 5 5 H 1.48497 * 109.47365 * 29.99722 * 3 2 1 6 6 H 1.48508 * 109.47001 * 149.99729 * 3 2 1 7 7 C 1.37883 * 119.99476 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99441 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99991 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46867 * 179.97438 * 9 7 2 11 11 H 1.09001 * 110.01969 * 306.39329 * 10 9 7 12 12 C 1.54463 * 110.12096 * 67.67544 * 10 9 7 13 13 C 1.54890 * 104.10368 * 142.72632 * 12 10 9 14 14 C 1.54887 * 102.91108 * 322.30112 * 13 12 10 15 15 C 1.53877 * 110.03103 * 184.99896 * 10 9 7 16 16 H 1.08997 * 110.07404 * 121.41137 * 15 10 9 17 17 N 1.46498 * 110.03212 * 0.02562 * 15 10 9 18 18 C 1.34428 * 126.82164 * 276.08723 * 17 15 10 19 19 N 1.30836 * 108.07490 * 179.89703 * 18 17 15 20 20 C 1.33239 * 109.82796 * 0.37857 * 19 18 17 21 21 N 1.30710 * 108.94889 * 359.76839 * 20 19 18 22 22 H 0.97003 * 119.99635 * 0.02562 * 1 2 3 23 23 H 1.08997 * 109.47141 * 59.99839 * 9 7 2 24 24 H 1.08996 * 109.47418 * 299.99415 * 9 7 2 25 25 H 1.09003 * 110.40626 * 24.13657 * 12 10 9 26 26 H 1.09003 * 110.65885 * 261.43882 * 12 10 9 27 27 H 1.09002 * 110.75897 * 203.89231 * 13 12 10 28 28 H 1.09006 * 110.75292 * 80.70460 * 13 12 10 29 29 H 1.09004 * 110.48468 * 156.53190 * 14 13 12 30 30 H 1.09004 * 110.48634 * 279.03637 * 14 13 12 31 31 H 1.08001 * 125.96696 * 0.03995 * 18 17 15 32 32 H 1.08005 * 125.52634 * 179.72688 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0462 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0844 -1.1942 0.0010 9 6 1.2508 -2.4992 0.0005 10 6 2.2450 -3.6622 0.0005 11 1 2.9494 -3.5510 -0.8239 12 6 3.0091 -3.7081 1.3422 13 6 3.1667 -5.2208 1.6352 14 6 1.8211 -5.8104 1.1446 15 6 1.4928 -4.9986 -0.1254 16 1 1.8319 -5.5368 -1.0105 17 7 0.0503 -4.7567 -0.2082 18 6 -0.7958 -4.5717 0.8198 19 7 -1.9947 -4.3852 0.3302 20 6 -1.9552 -4.4522 -0.9999 21 7 -0.7243 -4.6782 -1.3771 22 1 -0.4850 0.8401 -0.0004 23 1 0.6245 -2.5570 -0.8896 24 1 0.6239 -2.5567 0.8903 25 1 2.4271 -3.2259 2.1277 26 1 3.9860 -3.2345 1.2448 27 1 3.2988 -5.3958 2.7029 28 1 4.0003 -5.6388 1.0707 29 1 1.9331 -6.8675 0.9034 30 1 1.0464 -5.6722 1.8989 31 1 -0.5318 -4.5740 1.8670 32 1 -2.8029 -4.3387 -1.6595 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260915464.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:21 Heat of formation + Delta-G solvation = 79.346895 kcal Electronic energy + Delta-G solvation = -15412.398727 eV Core-core repulsion = 12988.497447 eV Total energy + Delta-G solvation = -2423.901280 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.54873 -38.10136 -33.09293 -32.29814 -30.57404 -30.26351 -27.33600 -25.94998 -22.89952 -21.82948 -21.51145 -20.01263 -18.94628 -16.71123 -16.33403 -15.29968 -14.62708 -14.59504 -14.25412 -13.97424 -13.60987 -12.98706 -12.31906 -11.77836 -11.67985 -11.57387 -11.23899 -10.94992 -10.81230 -10.65948 -10.51992 -10.34367 -9.84087 -9.44388 -9.29282 -9.11865 -9.02693 -8.85157 -8.33992 -5.98662 -4.02460 2.30883 2.92274 3.30658 3.37305 3.39272 3.62682 4.44385 4.64090 4.86378 4.89363 5.08568 5.33950 5.36406 5.52741 5.57864 5.77563 5.80858 5.90528 5.98905 6.01613 6.20943 6.32839 6.65027 6.82150 6.85678 7.01390 7.08816 7.47328 7.63240 7.75611 7.97640 8.39221 8.72549 9.03701 9.61446 11.11635 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025253 B = 0.010935 C = 0.008263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.493146 B = 2559.993555 C = 3387.819395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.054 0.946 9 C 0.035 3.965 10 C -0.099 4.099 11 H 0.072 0.928 12 C -0.106 4.106 13 C -0.125 4.125 14 C -0.131 4.131 15 C 0.151 3.849 16 H 0.096 0.904 17 N -0.351 5.351 18 C 0.262 3.738 19 N -0.551 5.551 20 C 0.190 3.810 21 N -0.320 5.320 22 H 0.260 0.740 23 H 0.021 0.979 24 H 0.015 0.985 25 H 0.071 0.929 26 H 0.065 0.935 27 H 0.068 0.932 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.206 0.794 32 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.125 -11.128 2.790 11.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.072 0.928 9 C -0.002 4.002 10 C -0.119 4.119 11 H 0.090 0.910 12 C -0.143 4.143 13 C -0.163 4.163 14 C -0.170 4.170 15 C 0.048 3.952 16 H 0.114 0.886 17 N -0.140 5.140 18 C -0.034 4.034 19 N -0.279 5.279 20 C -0.113 4.113 21 N -0.148 5.148 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.033 0.967 25 H 0.090 0.910 26 H 0.084 0.916 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.223 0.777 32 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges 2.972 -11.036 2.222 11.643 hybrid contribution 0.579 1.175 0.082 1.312 sum 3.551 -9.861 2.304 10.731 Atomic orbital electron populations 1.69986 1.05957 1.26517 1.50209 1.25017 0.94787 0.99136 0.95357 0.86649 0.79831 0.83772 0.78068 1.20757 1.21244 1.19915 1.21166 0.92827 0.90890 1.51094 0.92776 1.19178 0.93115 0.90504 0.97400 1.22320 0.98183 0.93763 0.97627 0.90954 1.22369 1.00543 0.93720 0.97714 1.22523 0.95830 0.97228 1.00672 1.22765 0.99061 0.98953 0.96183 1.22284 0.74903 0.98486 0.99484 0.88627 1.50371 1.08541 1.51209 1.03867 1.25545 0.85384 0.96093 0.96423 1.70450 1.22740 1.25090 1.09623 1.25722 0.94963 0.99090 0.91497 1.77908 1.04078 1.25758 1.07036 0.93028 0.96095 0.96687 0.90991 0.91618 0.91360 0.91522 0.91004 0.90660 0.77716 0.77588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.16 13.29 55.43 0.74 -26.42 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 4 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 7 C -0.52 -14.53 8.68 -34.44 -0.30 -14.83 16 8 H 0.05 1.46 7.71 -52.49 -0.40 1.05 16 9 C 0.04 0.89 3.22 -27.88 -0.09 0.80 16 10 C -0.10 -1.91 2.87 -89.39 -0.26 -2.17 16 11 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 12 C -0.11 -1.73 5.93 -24.97 -0.15 -1.87 16 13 C -0.12 -1.50 6.90 -24.74 -0.17 -1.67 16 14 C -0.13 -1.62 6.38 -25.07 -0.16 -1.78 16 15 C 0.15 2.47 4.02 -66.81 -0.27 2.20 16 16 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 17 N -0.35 -6.59 2.22 -55.02 -0.12 -6.71 16 18 C 0.26 4.82 9.87 -90.65 -0.89 3.93 16 19 N -0.55 -11.00 11.19 -15.83 -0.18 -11.18 16 20 C 0.19 3.64 13.03 -91.82 -1.20 2.44 16 21 N -0.32 -6.52 12.20 29.29 0.36 -6.17 16 22 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 23 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 24 H 0.01 0.40 6.59 -51.93 -0.34 0.06 16 25 H 0.07 1.28 7.77 -51.93 -0.40 0.88 16 26 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.90 6.06 -51.93 -0.31 0.58 16 31 H 0.21 3.07 6.98 -52.49 -0.37 2.70 16 32 H 0.21 3.13 8.06 -52.48 -0.42 2.70 16 LS Contribution 263.61 15.07 3.97 3.97 Total: -1.00 -33.06 263.61 -8.13 -41.19 By element: Atomic # 1 Polarization: 4.16 SS G_CDS: -4.30 Total: -0.14 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: -3.58 Total: -11.35 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: 0.79 Total: -50.48 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -33.06 -8.13 -41.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260915464.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.541 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds