Wall clock time and date at job start Mon Mar 30 2020 03:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00095 * 2 1 4 4 H 1.48500 * 109.47052 * 239.99880 * 3 2 1 5 5 H 1.48494 * 109.47118 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.46888 * 120.00473 * 3 2 1 7 7 C 1.37881 * 119.99530 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99341 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00550 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47395 * 179.97438 * 9 7 2 11 11 H 1.09006 * 110.43478 * 52.45618 * 10 9 7 12 12 C 1.54267 * 110.59797 * 289.84226 * 10 9 7 13 13 C 1.53883 * 106.59716 * 217.65400 * 12 10 9 14 14 C 1.54263 * 106.59700 * 0.02562 * 13 12 10 15 15 C 1.54882 * 110.48742 * 174.99924 * 10 9 7 16 16 H 1.09001 * 110.75896 * 38.25743 * 15 10 9 17 17 N 1.46497 * 110.75596 * 275.06998 * 15 10 9 18 18 C 1.34433 * 126.81976 * 274.99360 * 17 15 10 19 19 N 1.30830 * 108.07650 * 179.73774 * 18 17 15 20 20 C 1.33244 * 109.82956 * 0.27201 * 19 18 17 21 21 N 1.30709 * 108.94525 * 359.97438 * 20 19 18 22 22 H 0.97000 * 119.99918 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46721 * 59.99394 * 9 7 2 24 24 H 1.08999 * 109.46746 * 299.99890 * 9 7 2 25 25 H 1.08997 * 110.03114 * 336.93648 * 12 10 9 26 26 H 1.09005 * 110.03614 * 98.36957 * 12 10 9 27 27 H 1.08998 * 110.02770 * 119.28179 * 13 12 10 28 28 H 1.08999 * 110.03258 * 240.71569 * 13 12 10 29 29 H 1.09010 * 110.48256 * 264.93071 * 14 13 12 30 30 H 1.09000 * 110.48690 * 142.28598 * 14 13 12 31 31 H 1.08002 * 125.96533 * 0.02562 * 18 17 15 32 32 H 1.08000 * 125.52768 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 1 2.9662 -3.5473 0.8076 12 6 2.9693 -3.7556 -1.3607 13 6 3.1358 -5.2542 -1.6680 14 6 2.5064 -6.0190 -0.4854 15 6 1.4989 -5.0135 0.1246 16 1 0.5711 -4.9975 -0.4474 17 7 1.2344 -5.3310 1.5301 18 6 2.0702 -5.9389 2.3898 19 7 1.4654 -6.0331 3.5460 20 6 0.2453 -5.5041 3.4623 21 7 0.0563 -5.0635 2.2463 22 1 -0.4850 0.8401 0.0004 23 1 0.6239 -2.5567 -0.8903 24 1 0.6247 -2.5571 0.8897 25 1 2.3698 -3.2797 -2.1368 26 1 3.9464 -3.2767 -1.2969 27 1 2.6171 -5.5055 -2.5931 28 1 4.1937 -5.5026 -1.7532 29 1 3.2694 -6.2850 0.2463 30 1 1.9890 -6.9106 -0.8397 31 1 3.0687 -6.2847 2.1664 32 1 -0.4712 -5.4483 4.2685 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260915470.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:26 Heat of formation + Delta-G solvation = 70.071366 kcal Electronic energy + Delta-G solvation = -15049.677758 eV Core-core repulsion = 12625.374261 eV Total energy + Delta-G solvation = -2424.303498 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.71369 -38.15811 -33.19430 -32.50057 -30.87849 -30.30121 -27.43556 -25.94486 -23.01804 -22.08397 -21.45561 -19.87279 -19.28535 -17.21052 -16.16605 -15.28160 -14.94344 -14.71066 -14.29421 -13.84725 -13.64305 -13.10679 -12.48804 -12.03867 -11.82591 -11.57532 -11.33401 -10.99188 -10.87399 -10.71561 -10.52353 -10.22899 -9.90707 -9.66080 -9.48930 -9.39236 -9.23237 -8.84273 -8.36004 -6.00354 -4.03465 2.04337 2.69805 3.31311 3.31737 3.36469 3.38140 4.43143 4.57277 4.58574 4.85959 4.99907 5.15529 5.34479 5.35237 5.58882 5.71043 5.75466 5.82490 5.86564 5.96289 6.21267 6.29177 6.64281 6.67475 6.80054 6.81965 6.99417 7.21472 7.63887 7.77296 7.97509 8.37945 8.45017 9.02347 9.60267 11.10532 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026703 B = 0.008827 C = 0.007253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.331996 B = 3171.359886 C = 3859.786651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.031 3.969 10 C -0.087 4.087 11 H 0.066 0.934 12 C -0.108 4.108 13 C -0.122 4.122 14 C -0.130 4.130 15 C 0.145 3.855 16 H 0.109 0.891 17 N -0.351 5.351 18 C 0.242 3.758 19 N -0.556 5.556 20 C 0.181 3.819 21 N -0.303 5.303 22 H 0.261 0.739 23 H 0.018 0.982 24 H 0.022 0.978 25 H 0.074 0.926 26 H 0.065 0.935 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.211 0.789 32 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.013 -11.941 -0.768 12.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.006 4.006 10 C -0.107 4.107 11 H 0.085 0.915 12 C -0.146 4.146 13 C -0.160 4.160 14 C -0.169 4.169 15 C 0.043 3.957 16 H 0.127 0.873 17 N -0.140 5.140 18 C -0.055 4.055 19 N -0.284 5.284 20 C -0.122 4.122 21 N -0.131 5.131 22 H 0.071 0.929 23 H 0.036 0.964 24 H 0.041 0.959 25 H 0.092 0.908 26 H 0.083 0.917 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.227 0.773 32 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 4.327 -11.596 -0.801 12.403 hybrid contribution 0.627 1.033 -0.057 1.210 sum 4.954 -10.563 -0.858 11.699 Atomic orbital electron populations 1.69960 1.06004 1.26684 1.50415 1.25010 0.94815 0.99165 0.95349 0.86693 0.79618 0.83347 0.78555 1.20246 1.21270 1.20328 1.21118 0.92788 0.90871 1.51003 0.92846 1.19133 0.93207 0.90531 0.97688 1.22490 0.98050 0.93186 0.96941 0.91538 1.22069 1.01010 0.93832 0.97730 1.22130 1.00367 0.96373 0.97102 1.22721 0.97869 0.97699 0.98611 1.22819 1.00250 0.97170 0.75503 0.87339 1.50527 1.10303 1.41874 1.11337 1.25759 0.98436 0.95568 0.85720 1.70475 1.07869 1.26653 1.23398 1.25905 0.94433 0.96762 0.95065 1.78152 1.05068 1.23304 1.06552 0.92937 0.96401 0.95933 0.90773 0.91663 0.91633 0.91595 0.90968 0.91014 0.77286 0.77191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.52 -14.45 8.77 -34.44 -0.30 -14.75 16 8 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 9 C 0.03 0.80 4.37 -27.89 -0.12 0.67 16 10 C -0.09 -1.67 2.48 -88.97 -0.22 -1.89 16 11 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 12 C -0.11 -1.76 6.03 -25.61 -0.15 -1.91 16 13 C -0.12 -1.46 6.80 -25.61 -0.17 -1.63 16 14 C -0.13 -1.54 6.18 -25.09 -0.15 -1.70 16 15 C 0.14 2.36 3.50 -65.95 -0.23 2.13 16 16 H 0.11 1.88 8.06 -51.93 -0.42 1.46 16 17 N -0.35 -6.10 3.67 -54.19 -0.20 -6.30 16 18 C 0.24 3.69 11.76 -90.65 -1.07 2.62 16 19 N -0.56 -9.34 11.19 -15.83 -0.18 -9.51 16 20 C 0.18 3.05 13.03 -91.81 -1.20 1.86 16 21 N -0.30 -5.89 12.70 29.29 0.37 -5.52 16 22 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 23 H 0.02 0.48 7.96 -51.93 -0.41 0.06 16 24 H 0.02 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.07 1.31 7.72 -51.93 -0.40 0.91 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.07 0.74 6.34 -51.92 -0.33 0.41 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.21 2.27 6.85 -52.49 -0.36 1.91 16 32 H 0.21 2.71 8.06 -52.49 -0.42 2.29 16 LS Contribution 269.98 15.07 4.07 4.07 Total: -1.00 -32.66 269.98 -8.36 -41.02 By element: Atomic # 1 Polarization: 3.25 SS G_CDS: -4.42 Total: -1.17 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: -3.72 Total: -13.03 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.73 Total: -47.59 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -32.66 -8.36 -41.02 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260915470.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.092 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds