Wall clock time and date at job start Mon Mar 30 2020 03:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86803 * 119.99772 * 2 1 4 4 H 1.48495 * 109.46990 * 270.00079 * 3 2 1 5 5 H 1.48501 * 109.47060 * 30.00564 * 3 2 1 6 6 H 1.48501 * 109.46741 * 150.00179 * 3 2 1 7 7 C 1.37877 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99797 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00082 * 0.02562 * 7 2 1 10 10 H 1.09004 * 109.46922 * 299.99771 * 9 7 2 11 11 C 1.53001 * 109.47396 * 59.99730 * 9 7 2 12 12 C 1.52999 * 109.47361 * 180.02562 * 11 9 7 13 13 C 1.52998 * 109.46918 * 300.00093 * 12 11 9 14 14 C 1.53001 * 109.47180 * 59.99796 * 13 12 11 15 15 C 1.52998 * 109.47109 * 179.97438 * 9 7 2 16 16 H 1.08993 * 109.47430 * 59.99679 * 15 9 7 17 17 N 1.46505 * 109.47234 * 299.99742 * 15 9 7 18 18 C 1.34427 * 126.82423 * 204.41585 * 17 15 9 19 19 N 1.30830 * 108.07773 * 179.89297 * 18 17 15 20 20 C 1.33244 * 109.82586 * 0.37654 * 19 18 17 21 21 N 1.30711 * 108.94952 * 359.76969 * 20 19 18 22 22 H 0.96995 * 120.00170 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.46824 * 300.00571 * 11 9 7 24 24 H 1.09004 * 109.47051 * 60.00121 * 11 9 7 25 25 H 1.08996 * 109.46841 * 59.99900 * 12 11 9 26 26 H 1.08993 * 109.46751 * 180.02562 * 12 11 9 27 27 H 1.08999 * 109.47040 * 179.97438 * 13 12 11 28 28 H 1.09004 * 109.47073 * 299.99877 * 13 12 11 29 29 H 1.09002 * 109.46824 * 179.97438 * 14 13 12 30 30 H 1.09004 * 109.47051 * 60.00067 * 14 13 12 31 31 H 1.08000 * 125.95996 * 0.03274 * 18 17 15 32 32 H 1.07999 * 125.52247 * 179.79757 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0017 10 1 0.6242 -2.5575 0.8881 11 6 0.3719 -2.5795 -1.2513 12 6 -0.3935 -3.9042 -1.2521 13 6 0.6004 -5.0674 -1.2523 14 6 1.4796 -4.9871 -0.0027 15 6 2.2454 -3.6620 -0.0027 16 1 2.8721 -3.6051 0.8872 17 7 3.0877 -3.5834 -1.1989 18 6 3.7343 -4.5988 -1.7972 19 7 4.3730 -4.1190 -2.8333 20 6 4.1657 -2.8059 -2.9237 21 7 3.3848 -2.4311 -1.9448 22 1 -0.4850 0.8400 0.0004 23 1 -0.3364 -1.7509 -1.2510 24 1 0.9989 -2.5211 -2.1411 25 1 -1.0204 -3.9621 -0.3624 26 1 -1.0194 -3.9615 -2.1426 27 1 0.0551 -6.0112 -1.2524 28 1 1.2274 -5.0095 -2.1420 29 1 2.1874 -5.8161 -0.0026 30 1 0.8526 -5.0451 0.8871 31 1 3.7260 -5.6309 -1.4794 32 1 4.5760 -2.1566 -3.6829 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260918062.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:10 Heat of formation + Delta-G solvation = 67.086479 kcal Electronic energy + Delta-G solvation = -15859.683937 eV Core-core repulsion = 13435.251005 eV Total energy + Delta-G solvation = -2424.432932 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.84817 -39.31993 -34.88014 -33.83160 -32.12806 -31.09819 -30.20970 -26.76521 -24.28571 -23.17647 -22.28702 -22.03029 -20.35740 -18.50201 -17.25225 -16.88230 -16.47573 -15.71229 -15.47975 -15.06091 -14.57805 -14.47899 -13.97269 -13.52011 -13.29532 -13.01709 -12.83978 -12.76678 -12.50448 -12.14322 -11.79457 -11.62086 -11.37496 -10.81301 -10.73257 -10.54339 -10.42665 -10.28135 -10.10972 -8.00318 -6.03892 1.09638 1.37575 1.40790 1.48128 1.77748 2.25131 2.48388 3.28676 3.65627 3.74291 3.98576 4.07157 4.19434 4.40118 4.49207 4.68098 4.72368 4.83063 4.93753 4.93925 5.11100 5.21128 5.32335 5.41255 5.57053 5.64035 5.75572 5.78901 5.98737 6.13351 6.30869 6.50324 6.99383 7.43701 7.58261 9.04563 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.026981 B = 0.013205 C = 0.010024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.508199 B = 2119.840602 C = 2792.648776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.010 3.990 3 Si 0.939 3.061 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.476 4.476 8 H 0.048 0.952 9 C 0.049 3.951 10 H 0.022 0.978 11 C -0.100 4.100 12 C -0.120 4.120 13 C -0.108 4.108 14 C -0.120 4.120 15 C 0.157 3.843 16 H 0.082 0.918 17 N -0.347 5.347 18 C 0.236 3.764 19 N -0.575 5.575 20 C 0.147 3.853 21 N -0.304 5.304 22 H 0.254 0.746 23 H 0.051 0.949 24 H 0.020 0.980 25 H 0.057 0.943 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.043 0.957 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.251 0.749 32 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.954 -11.674 -0.665 12.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.186 4.186 3 Si 0.768 3.232 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.514 4.514 8 H 0.067 0.933 9 C 0.030 3.970 10 H 0.040 0.960 11 C -0.139 4.139 12 C -0.157 4.157 13 C -0.146 4.146 14 C -0.158 4.158 15 C 0.055 3.945 16 H 0.100 0.900 17 N -0.138 5.138 18 C -0.059 4.059 19 N -0.304 5.304 20 C -0.155 4.155 21 N -0.131 5.131 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.039 0.961 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.107 0.893 28 H 0.062 0.938 29 H 0.120 0.880 30 H 0.115 0.885 31 H 0.267 0.733 32 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 2.725 -10.989 -0.679 11.342 hybrid contribution 0.206 1.467 -0.057 1.482 sum 2.931 -9.522 -0.736 9.990 Atomic orbital electron populations 1.69991 1.06671 1.26232 1.53733 1.25457 0.95377 1.01439 0.96323 0.85843 0.78769 0.81129 0.77474 1.21385 1.21367 1.20008 1.21299 0.92550 0.91250 1.46340 0.93339 1.18783 0.92314 0.91383 0.94511 0.96025 1.21371 0.98435 0.96381 0.97681 1.21607 0.97972 0.95591 1.00540 1.21471 0.97381 0.98427 0.97307 1.21997 0.99286 0.94443 1.00099 1.21791 0.91385 0.98685 0.82651 0.89992 1.50599 1.35755 1.04760 1.22706 1.26545 0.91431 0.97689 0.90284 1.70433 1.28411 1.10073 1.21513 1.26501 0.97917 0.92214 0.98904 1.78724 1.18459 1.08639 1.07297 0.93732 0.93059 0.96093 0.92456 0.93519 0.89259 0.93780 0.87969 0.88451 0.73319 0.76023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.95 11.32 21.45 0.24 -53.71 16 2 C 0.01 0.59 5.30 84.65 0.45 1.03 16 3 Si 0.94 46.07 29.54 68.60 2.03 48.10 16 4 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 5 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 6 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 7 C -0.48 -25.73 6.89 25.60 0.18 -25.55 16 8 H 0.05 2.71 6.79 -2.91 -0.02 2.69 16 9 C 0.05 2.28 1.86 -11.54 -0.02 2.25 16 10 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 11 C -0.10 -4.69 4.79 30.59 0.15 -4.55 16 12 C -0.12 -4.27 5.92 30.59 0.18 -4.09 16 13 C -0.11 -2.97 5.73 30.59 0.18 -2.79 16 14 C -0.12 -3.00 5.08 30.61 0.16 -2.84 16 15 C 0.16 5.57 3.05 45.01 0.14 5.71 16 16 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 17 N -0.35 -12.80 2.85 -331.37 -0.94 -13.74 16 18 C 0.24 7.11 10.65 180.36 1.92 9.03 16 19 N -0.58 -19.84 11.19 -204.00 -2.28 -22.12 16 20 C 0.15 5.50 13.03 180.76 2.36 7.86 16 21 N -0.30 -13.29 8.46 -61.24 -0.52 -13.80 16 22 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 23 H 0.05 2.82 6.07 -2.39 -0.01 2.80 16 24 H 0.02 1.03 6.57 -2.38 -0.02 1.02 16 25 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.04 1.32 6.66 -2.38 -0.02 1.31 16 29 H 0.10 1.72 7.24 -2.39 -0.02 1.70 16 30 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 31 H 0.25 4.67 7.34 -2.91 -0.02 4.65 16 32 H 0.22 6.84 8.06 -2.91 -0.02 6.82 16 Total: -1.00 -67.49 252.85 5.31 -62.18 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: 1.11 Total: 7.03 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 5.68 Total: -13.93 kcal Atomic # 7 Polarization: -99.88 SS G_CDS: -3.50 Total: -103.38 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -67.49 5.31 -62.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260918062.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.268 kcal (2) G-P(sol) polarization free energy of solvation -67.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds