Wall clock time and date at job start Mon Mar 30 2020 03:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86806 * 120.00009 * 2 1 4 4 H 1.48492 * 109.47119 * 274.99511 * 3 2 1 5 5 H 1.48503 * 109.46741 * 34.99557 * 3 2 1 6 6 H 1.48500 * 109.47186 * 154.99320 * 3 2 1 7 7 C 1.37878 * 120.00312 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00205 * 189.44811 * 7 2 1 9 9 C 1.50692 * 120.00016 * 9.44181 * 7 2 1 10 10 H 1.09005 * 109.47318 * 305.46361 * 9 7 2 11 11 C 1.53004 * 109.47304 * 65.46250 * 9 7 2 12 12 C 1.52993 * 109.47393 * 180.02562 * 11 9 7 13 13 C 1.53001 * 109.47274 * 300.00046 * 12 11 9 14 14 C 1.52995 * 109.47261 * 59.99981 * 13 12 11 15 15 C 1.53001 * 109.47434 * 185.46340 * 9 7 2 16 16 H 1.09001 * 109.46752 * 299.99798 * 15 9 7 17 17 N 1.46500 * 109.47113 * 59.99927 * 15 9 7 18 18 C 1.34423 * 126.82490 * 85.00256 * 17 15 9 19 19 N 1.30827 * 108.08067 * 179.97438 * 18 17 15 20 20 C 1.33245 * 109.82850 * 359.97438 * 19 18 17 21 21 N 1.30715 * 108.94248 * 0.26371 * 20 19 18 22 22 H 0.96994 * 119.99887 * 359.97438 * 1 2 3 23 23 H 1.08999 * 109.46799 * 299.99737 * 11 9 7 24 24 H 1.08997 * 109.46598 * 60.00053 * 11 9 7 25 25 H 1.09005 * 109.47389 * 60.00012 * 12 11 9 26 26 H 1.08997 * 109.47544 * 179.97438 * 12 11 9 27 27 H 1.08996 * 109.47339 * 180.02562 * 13 12 11 28 28 H 1.09001 * 109.46752 * 299.99787 * 13 12 11 29 29 H 1.09002 * 109.47445 * 180.02562 * 14 13 12 30 30 H 1.09001 * 109.47396 * 60.00200 * 14 13 12 31 31 H 1.08005 * 125.95855 * 359.97438 * 18 17 15 32 32 H 1.07999 * 125.52336 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.3911 2.1074 -1.3947 5 1 1.5033 2.6199 0.8030 6 1 3.5955 1.4121 0.5918 7 6 2.0046 -1.1940 -0.0005 8 1 3.0736 -1.2004 0.1530 9 6 1.2665 -2.4902 -0.2152 10 1 0.4567 -2.5716 0.5099 11 6 0.6878 -2.5191 -1.6313 12 6 -0.0621 -3.8347 -1.8490 13 6 0.9033 -5.0080 -1.6686 14 6 1.4819 -4.9791 -0.2526 15 6 2.2323 -3.6630 -0.0349 16 1 3.0420 -3.5816 -0.7601 17 7 2.7864 -3.6354 1.3210 18 6 2.2317 -4.1569 2.4288 19 7 3.0363 -3.9243 3.4338 20 6 4.1103 -3.2601 3.0086 21 7 4.0007 -3.0551 1.7223 22 1 -0.4850 0.8400 0.0004 23 1 -0.0003 -1.6836 -1.7596 24 1 1.4976 -2.4377 -2.3563 25 1 -0.8719 -3.9158 -1.1239 26 1 -0.4748 -3.8552 -2.8577 27 1 0.3691 -5.9453 -1.8241 28 1 1.7130 -4.9270 -2.3937 29 1 2.1700 -5.8147 -0.1241 30 1 0.6722 -5.0601 0.4726 31 1 1.2867 -4.6772 2.4802 32 1 4.9351 -2.9388 3.6274 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260918067.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:18:18 Heat of formation + Delta-G solvation = 52.498699 kcal Electronic energy + Delta-G solvation = -15512.491954 eV Core-core repulsion = 13087.426448 eV Total energy + Delta-G solvation = -2425.065506 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.83881 -39.40709 -34.91264 -34.27792 -32.05039 -31.40212 -29.97405 -26.79734 -24.47379 -23.17023 -22.50098 -21.97506 -20.34903 -18.56103 -17.91014 -16.79328 -16.18659 -15.93037 -15.34974 -15.06374 -14.87951 -14.65098 -14.10839 -13.60293 -13.43284 -13.06966 -12.91038 -12.67320 -12.32324 -12.08110 -11.90485 -11.82187 -11.36530 -11.23681 -10.82867 -10.73716 -10.55437 -10.47491 -10.10703 -8.18257 -6.22466 0.95280 1.30833 1.33820 1.43403 1.67602 2.17492 2.38168 3.13270 3.59224 3.69805 3.95457 4.05556 4.20148 4.34721 4.50551 4.55278 4.62816 4.77702 4.87683 4.91196 5.14424 5.19232 5.30333 5.42271 5.45622 5.55756 5.65614 5.72747 5.89272 5.92175 6.21386 6.33138 6.87397 7.31391 7.43181 8.89485 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.019984 B = 0.014277 C = 0.009200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.776197 B = 1960.755060 C = 3042.634319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.021 3.979 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.286 1.286 6 H -0.280 1.280 7 C -0.521 4.521 8 H 0.046 0.954 9 C 0.047 3.953 10 H 0.009 0.991 11 C -0.097 4.097 12 C -0.117 4.117 13 C -0.101 4.101 14 C -0.118 4.118 15 C 0.163 3.837 16 H 0.078 0.922 17 N -0.346 5.346 18 C 0.244 3.756 19 N -0.577 5.577 20 C 0.172 3.828 21 N -0.349 5.349 22 H 0.259 0.741 23 H 0.043 0.957 24 H 0.038 0.962 25 H 0.054 0.946 26 H 0.068 0.932 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.241 0.759 32 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.103 -10.629 -1.578 10.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.762 3.238 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.205 1.205 7 C -0.560 4.560 8 H 0.065 0.935 9 C 0.027 3.973 10 H 0.027 0.973 11 C -0.136 4.136 12 C -0.155 4.155 13 C -0.139 4.139 14 C -0.157 4.157 15 C 0.061 3.939 16 H 0.096 0.904 17 N -0.134 5.134 18 C -0.052 4.052 19 N -0.306 5.306 20 C -0.130 4.130 21 N -0.177 5.177 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.057 0.943 25 H 0.073 0.927 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.257 0.743 32 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 1.415 -10.222 -1.762 10.469 hybrid contribution 0.200 1.586 0.079 1.600 sum 1.615 -8.637 -1.684 8.946 Atomic orbital electron populations 1.70036 1.06708 1.26964 1.51570 1.25498 0.95416 1.01604 0.95250 0.85900 0.78792 0.80946 0.78198 1.19742 1.21173 1.20536 1.21452 0.94015 0.92369 1.48121 0.93548 1.18950 0.92751 0.91036 0.94517 0.97324 1.21384 0.98511 0.97164 0.96573 1.21600 0.98118 0.94375 1.01395 1.21435 0.98930 0.98957 0.94617 1.21943 0.99968 0.93876 0.99896 1.21770 0.96323 0.98208 0.77607 0.90385 1.50574 1.14133 1.38553 1.10119 1.26359 1.00229 0.96836 0.81803 1.70451 1.05367 1.23291 1.31472 1.26427 0.98617 0.97203 0.90782 1.77929 1.02897 1.20923 1.15959 0.93162 0.93846 0.94336 0.92728 0.91286 0.88546 0.91526 0.89961 0.90237 0.74340 0.74659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.55 12.16 21.45 0.26 -52.29 16 2 C 0.02 1.19 5.20 84.66 0.44 1.63 16 3 Si 0.93 45.40 29.55 68.60 2.03 47.43 16 4 H -0.27 -12.71 7.11 99.48 0.71 -12.01 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 6 H -0.28 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.52 -28.55 8.06 25.60 0.21 -28.34 16 8 H 0.05 2.68 7.13 -2.91 -0.02 2.66 16 9 C 0.05 2.16 1.68 -11.54 -0.02 2.14 16 10 H 0.01 0.45 8.09 -2.38 -0.02 0.43 16 11 C -0.10 -4.08 5.04 30.59 0.15 -3.93 16 12 C -0.12 -3.59 5.92 30.59 0.18 -3.41 16 13 C -0.10 -2.44 5.92 30.59 0.18 -2.25 16 14 C -0.12 -3.15 4.86 30.61 0.15 -3.00 16 15 C 0.16 6.13 2.64 45.01 0.12 6.24 16 16 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 17 N -0.35 -13.70 3.13 -331.35 -1.04 -14.74 16 18 C 0.24 8.59 11.78 180.36 2.12 10.72 16 19 N -0.58 -21.54 11.19 -204.00 -2.28 -23.82 16 20 C 0.17 6.38 13.03 180.76 2.36 8.74 16 21 N -0.35 -14.88 12.05 -61.24 -0.74 -15.62 16 22 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 23 H 0.04 2.12 6.90 -2.39 -0.02 2.11 16 24 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 25 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 30 H 0.08 1.96 7.22 -2.39 -0.02 1.94 16 31 H 0.24 6.28 7.32 -2.91 -0.02 6.26 16 32 H 0.24 6.65 8.06 -2.91 -0.02 6.62 16 Total: -1.00 -66.93 263.55 5.22 -61.72 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 1.10 Total: 8.78 kcal Atomic # 6 Polarization: -17.35 SS G_CDS: 5.89 Total: -11.46 kcal Atomic # 7 Polarization: -102.67 SS G_CDS: -3.80 Total: -106.47 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -66.93 5.22 -61.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260918067.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.214 kcal (2) G-P(sol) polarization free energy of solvation -66.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds