Wall clock time and date at job start Mon Mar 30 2020 03:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00244 * 2 1 4 4 H 1.48506 * 109.47008 * 269.99615 * 3 2 1 5 5 H 1.48500 * 109.47194 * 29.99097 * 3 2 1 6 6 H 1.48494 * 109.47387 * 149.99495 * 3 2 1 7 7 C 1.37884 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99515 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00047 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46960 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.01895 * 305.70330 * 10 9 7 12 12 C 1.54269 * 110.03227 * 67.09357 * 10 9 7 13 13 C 1.54886 * 104.19544 * 142.93793 * 12 10 9 14 14 C 1.54890 * 102.75126 * 322.06034 * 13 12 10 15 15 C 1.53879 * 110.07355 * 184.28139 * 10 9 7 16 16 H 1.09003 * 110.02660 * 121.40367 * 15 10 9 17 17 N 1.46503 * 110.02906 * 359.97438 * 15 10 9 18 18 C 1.35312 * 125.86959 * 274.70911 * 17 15 10 19 19 C 1.35353 * 106.17634 * 179.90723 * 18 17 15 20 20 N 1.33780 * 106.49438 * 0.35508 * 19 18 17 21 21 N 1.28628 * 108.88366 * 359.77019 * 20 19 18 22 22 H 0.96994 * 119.99905 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47224 * 60.00033 * 9 7 2 24 24 H 1.08994 * 109.47350 * 300.00047 * 9 7 2 25 25 H 1.08994 * 110.48595 * 261.62314 * 12 10 9 26 26 H 1.09000 * 110.48429 * 24.26544 * 12 10 9 27 27 H 1.09003 * 110.75073 * 80.37522 * 13 12 10 28 28 H 1.08996 * 110.75807 * 203.55460 * 13 12 10 29 29 H 1.09002 * 110.48212 * 156.61759 * 14 13 12 30 30 H 1.09000 * 110.48368 * 279.12766 * 14 13 12 31 31 H 1.07997 * 126.90803 * 0.02562 * 18 17 15 32 32 H 1.07992 * 126.75243 * 180.12928 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6998 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 1 2.9420 -3.5574 -0.8311 12 6 3.0174 -3.6972 1.3356 13 6 3.1840 -5.2070 1.6385 14 6 1.8341 -5.8015 1.1658 15 6 1.4929 -5.0002 -0.1074 16 1 1.8246 -5.5446 -0.9915 17 7 0.0494 -4.7600 -0.1772 18 6 -0.7789 -4.5946 0.8799 19 6 -2.0146 -4.3983 0.3637 20 7 -1.8848 -4.4604 -0.9664 21 7 -0.6499 -4.6757 -1.2546 22 1 -0.4850 0.8400 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6240 -2.5568 0.8902 25 1 3.9913 -3.2203 1.2256 26 1 2.4406 -3.2117 2.1228 27 1 4.0121 -5.6264 1.0670 28 1 3.3300 -5.3731 2.7058 29 1 1.9447 -6.8604 0.9319 30 1 1.0668 -5.6579 1.9266 31 1 -0.5080 -4.6133 1.9252 32 1 -2.9265 -4.2290 0.9167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260931035.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:40 Heat of formation + Delta-G solvation = 66.478371 kcal Electronic energy + Delta-G solvation = -15459.448989 eV Core-core repulsion = 13034.989688 eV Total energy + Delta-G solvation = -2424.459302 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.13062 -39.59494 -35.20529 -34.25053 -32.14796 -31.77772 -29.04235 -27.76062 -24.70806 -23.57087 -23.27344 -21.36516 -20.57089 -18.76825 -18.02878 -17.05645 -16.50607 -16.32462 -15.85434 -15.39497 -14.67539 -14.39131 -14.28178 -13.51085 -13.32026 -13.04441 -12.79159 -12.60209 -12.44438 -12.26548 -11.90928 -11.73534 -11.58265 -11.43171 -11.20371 -11.13294 -10.71514 -10.59546 -10.10501 -8.20844 -6.32113 0.86046 1.35438 1.36623 1.47158 1.65888 1.79041 2.37265 3.12435 3.40421 3.62135 3.76505 3.89916 4.21113 4.34627 4.36421 4.44937 4.50011 4.55283 4.74378 4.88080 4.99302 5.02785 5.12508 5.28808 5.31836 5.39644 5.46153 5.52750 5.69739 5.80409 5.92371 6.20948 6.85148 7.37063 7.69247 8.89973 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025642 B = 0.010941 C = 0.008308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.687105 B = 2558.628302 C = 3369.585266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.000 4.000 3 Si 0.959 3.041 4 H -0.279 1.279 5 H -0.284 1.284 6 H -0.257 1.257 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.044 3.956 10 C -0.098 4.098 11 H 0.069 0.931 12 C -0.103 4.103 13 C -0.108 4.108 14 C -0.121 4.121 15 C 0.129 3.871 16 H 0.115 0.885 17 N -0.261 5.261 18 C -0.034 4.034 19 C -0.070 4.070 20 N -0.318 5.318 21 N -0.129 5.129 22 H 0.260 0.740 23 H -0.027 1.027 24 H -0.001 1.001 25 H 0.066 0.934 26 H 0.053 0.947 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.086 0.914 31 H 0.215 0.785 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.483 -12.070 6.973 14.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.198 4.198 3 Si 0.784 3.216 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.181 1.181 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.007 3.993 10 C -0.117 4.117 11 H 0.087 0.913 12 C -0.141 4.141 13 C -0.145 4.145 14 C -0.159 4.159 15 C 0.028 3.972 16 H 0.133 0.867 17 N -0.055 5.055 18 C -0.186 4.186 19 C -0.228 4.228 20 N -0.183 5.183 21 N -0.107 5.107 22 H 0.068 0.932 23 H -0.009 1.009 24 H 0.017 0.983 25 H 0.085 0.915 26 H 0.072 0.928 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.232 0.768 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 5.383 -12.024 5.389 14.233 hybrid contribution -0.082 1.545 0.705 1.700 sum 5.300 -10.479 6.094 13.230 Atomic orbital electron populations 1.70139 1.07840 1.27405 1.51662 1.25957 0.95603 1.03265 0.95005 0.85537 0.78980 0.78901 0.78182 1.20524 1.20968 1.18092 1.21625 0.93418 0.92069 1.50144 0.91962 1.18977 0.93461 0.92592 0.94288 1.22175 0.97212 0.92469 0.99867 0.91268 1.22255 0.99438 0.97468 0.94922 1.22484 0.96095 0.93105 1.02844 1.22826 0.99485 0.99924 0.93701 1.22922 0.72401 0.98415 1.03468 0.86691 1.47613 1.10421 1.43158 1.04258 1.23890 0.90181 1.07471 0.97057 1.24021 1.00249 1.07614 0.90931 1.74902 1.09366 1.17885 1.16112 1.78074 0.98787 1.21346 1.12525 0.93150 1.00863 0.98268 0.91545 0.92827 0.89378 0.88636 0.87748 0.89592 0.76834 0.77268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.24 13.29 21.45 0.28 -57.95 16 2 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 3 Si 0.96 44.84 29.54 68.60 2.03 46.87 16 4 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 5 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 6 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 7 C -0.53 -29.98 8.67 25.60 0.22 -29.76 16 8 H 0.06 3.31 7.70 -2.91 -0.02 3.29 16 9 C 0.04 2.27 3.24 29.85 0.10 2.37 16 10 C -0.10 -3.65 2.88 -10.07 -0.03 -3.68 16 11 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 12 C -0.10 -3.09 5.87 31.67 0.19 -2.91 16 13 C -0.11 -2.05 6.91 31.88 0.22 -1.83 16 14 C -0.12 -2.45 6.36 31.67 0.20 -2.25 16 15 C 0.13 3.95 3.92 45.71 0.18 4.13 16 16 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 17 N -0.26 -9.79 2.01 -323.73 -0.65 -10.44 16 18 C -0.03 -1.15 8.85 83.49 0.74 -0.41 16 19 C -0.07 -2.58 12.06 83.73 1.01 -1.57 16 20 N -0.32 -14.27 12.41 -58.25 -0.72 -15.00 16 21 N -0.13 -5.78 12.49 37.02 0.46 -5.31 16 22 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 23 H -0.03 -1.65 7.08 -2.39 -0.02 -1.66 16 24 H 0.00 -0.05 6.59 -2.39 -0.02 -0.07 16 25 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.05 1.81 7.77 -2.39 -0.02 1.79 16 27 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.66 5.94 -2.39 -0.01 1.65 16 31 H 0.22 5.43 6.91 -2.91 -0.02 5.41 16 32 H 0.21 5.99 8.06 -2.91 -0.02 5.97 16 Total: -1.00 -75.00 262.47 5.79 -69.21 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: 1.10 Total: 8.11 kcal Atomic # 6 Polarization: -38.77 SS G_CDS: 3.29 Total: -35.49 kcal Atomic # 7 Polarization: -88.08 SS G_CDS: -0.63 Total: -88.70 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -75.00 5.79 -69.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260931035.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.688 kcal (2) G-P(sol) polarization free energy of solvation -74.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds