Wall clock time and date at job start Mon Mar 30 2020 03:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99995 * 2 1 4 4 H 1.48494 * 109.47410 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47147 * 299.99924 * 3 2 1 6 6 H 1.48504 * 109.47099 * 59.99832 * 3 2 1 7 7 C 1.37881 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99732 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46730 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.01895 * 54.29951 * 10 9 7 12 12 C 1.54273 * 110.07278 * 292.87841 * 10 9 7 13 13 C 1.54888 * 104.19469 * 217.08410 * 12 10 9 14 14 C 1.54882 * 102.74855 * 37.94442 * 13 12 10 15 15 C 1.53873 * 110.03127 * 175.68940 * 10 9 7 16 16 H 1.08996 * 110.03511 * 238.61485 * 15 10 9 17 17 N 1.46497 * 110.03110 * 0.02562 * 15 10 9 18 18 C 1.35310 * 125.87477 * 84.71723 * 17 15 10 19 19 C 1.35347 * 106.18119 * 179.90245 * 18 17 15 20 20 N 1.33768 * 106.49344 * 0.35155 * 19 18 17 21 21 N 1.28634 * 108.88713 * 359.77101 * 20 19 18 22 22 H 0.97004 * 119.99794 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47100 * 59.99892 * 9 7 2 24 24 H 1.09003 * 109.46979 * 299.99616 * 9 7 2 25 25 H 1.09001 * 110.48533 * 335.76669 * 12 10 9 26 26 H 1.08999 * 110.48202 * 98.40596 * 12 10 9 27 27 H 1.08998 * 110.75533 * 279.63020 * 13 12 10 28 28 H 1.09003 * 110.74944 * 156.25917 * 13 12 10 29 29 H 1.09000 * 110.49014 * 203.37558 * 14 13 12 30 30 H 1.09001 * 110.48811 * 80.73570 * 14 13 12 31 31 H 1.08007 * 126.90899 * 0.02562 * 18 17 15 32 32 H 1.08002 * 126.75327 * 180.12117 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9420 -3.5573 0.8322 12 6 3.0176 -3.6984 -1.3345 13 6 3.1833 -5.2085 -1.6364 14 6 1.8330 -5.8018 -1.1636 15 6 1.4921 -4.9995 0.1092 16 1 1.8233 -5.5438 0.9935 17 7 0.0489 -4.7583 0.1795 18 6 -0.7780 -4.5819 -0.8770 19 6 -2.0148 -4.3934 -0.3607 20 7 -1.8846 -4.4550 0.9692 21 7 -0.6498 -4.6724 1.2571 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8904 25 1 2.4411 -3.2129 -2.1220 26 1 3.9918 -3.2221 -1.2246 27 1 4.0110 -5.6282 -1.0646 28 1 3.3260 -5.3755 -2.7041 29 1 1.9427 -6.8606 -0.9291 30 1 1.0653 -5.6561 -1.9235 31 1 -0.5060 -4.5917 -1.9223 32 1 -2.9267 -4.2227 -0.9135 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260931037.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:43 Heat of formation + Delta-G solvation = 88.010051 kcal Electronic energy + Delta-G solvation = -15460.503971 eV Core-core repulsion = 13036.978353 eV Total energy + Delta-G solvation = -2423.525618 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.66490 -38.26568 -33.16222 -32.83865 -30.51348 -30.22366 -27.77232 -25.98513 -22.94429 -22.12281 -21.72641 -20.19375 -19.10715 -16.93866 -16.50494 -15.38606 -15.01227 -14.55015 -14.50644 -14.09014 -13.21396 -13.00812 -12.38388 -12.05207 -11.73042 -11.42303 -11.08152 -10.98151 -10.86015 -10.71425 -10.57053 -10.39744 -10.22950 -9.88612 -9.46606 -9.15931 -9.10418 -8.68060 -8.34091 -6.00826 -4.04775 2.31278 2.99654 3.27553 3.29028 3.36660 3.39328 4.42636 4.55170 4.79491 5.00003 5.11874 5.34138 5.41608 5.53278 5.59256 5.73512 5.74075 5.87596 5.89903 5.94602 6.14634 6.21663 6.43325 6.61295 6.75941 6.79400 6.88823 7.31009 7.59689 7.70033 7.94602 8.35751 9.01197 9.20547 9.59363 11.09635 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025633 B = 0.010952 C = 0.008313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.069506 B = 2556.080573 C = 3367.376785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.059 3.941 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.055 0.945 9 C 0.029 3.971 10 C -0.098 4.098 11 H 0.076 0.924 12 C -0.105 4.105 13 C -0.125 4.125 14 C -0.131 4.131 15 C 0.136 3.864 16 H 0.104 0.896 17 N -0.263 5.263 18 C -0.037 4.037 19 C -0.057 4.057 20 N -0.281 5.281 21 N -0.087 5.087 22 H 0.260 0.740 23 H 0.018 0.982 24 H 0.021 0.979 25 H 0.072 0.928 26 H 0.066 0.934 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.179 0.821 32 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.620 -11.036 -5.275 12.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.008 4.008 10 C -0.117 4.117 11 H 0.095 0.905 12 C -0.143 4.143 13 C -0.163 4.163 14 C -0.170 4.170 15 C 0.034 3.966 16 H 0.122 0.878 17 N -0.056 5.056 18 C -0.189 4.189 19 C -0.215 4.215 20 N -0.146 5.146 21 N -0.066 5.066 22 H 0.070 0.930 23 H 0.037 0.963 24 H 0.039 0.961 25 H 0.091 0.909 26 H 0.085 0.915 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.196 0.804 32 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.495 -10.981 -3.700 12.103 hybrid contribution 0.492 1.206 -1.240 1.798 sum 3.987 -9.775 -4.940 11.655 Atomic orbital electron populations 1.69994 1.05978 1.26474 1.50162 1.25019 0.94793 0.99189 0.95298 0.86581 0.80060 0.84029 0.77603 1.19777 1.21046 1.21024 1.21163 0.92862 0.90744 1.51164 0.92641 1.19250 0.93204 0.90676 0.97647 1.22285 0.98210 0.93195 0.98045 0.90543 1.22335 1.00545 0.93810 0.97579 1.22533 0.95732 0.97189 1.00809 1.22784 0.99240 0.98941 0.96020 1.22624 0.74101 0.99489 1.00404 0.87781 1.47357 1.09588 1.44120 1.04549 1.23267 0.90724 1.09064 0.95836 1.23355 0.98303 1.08104 0.91716 1.74978 1.08849 1.16674 1.14102 1.78164 0.98340 1.19248 1.10892 0.93032 0.96325 0.96063 0.90919 0.91479 0.91400 0.91262 0.90863 0.90257 0.80352 0.80245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.52 -14.43 8.67 -34.44 -0.30 -14.73 16 8 H 0.06 1.48 7.70 -52.49 -0.40 1.08 16 9 C 0.03 0.74 3.24 -27.88 -0.09 0.65 16 10 C -0.10 -1.85 2.88 -89.50 -0.26 -2.11 16 11 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 12 C -0.10 -1.68 5.87 -25.07 -0.15 -1.83 16 13 C -0.12 -1.47 6.91 -24.74 -0.17 -1.64 16 14 C -0.13 -1.60 6.37 -25.07 -0.16 -1.76 16 15 C 0.14 2.18 3.91 -66.81 -0.26 1.92 16 16 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 17 N -0.26 -4.96 2.02 -53.68 -0.11 -5.06 16 18 C -0.04 -0.65 8.80 -17.05 -0.15 -0.80 16 19 C -0.06 -1.05 12.05 -17.74 -0.21 -1.27 16 20 N -0.28 -6.11 12.41 30.23 0.38 -5.74 16 21 N -0.09 -1.90 12.48 60.35 0.75 -1.14 16 22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 23 H 0.02 0.49 6.56 -51.93 -0.34 0.15 16 24 H 0.02 0.61 7.07 -51.93 -0.37 0.24 16 25 H 0.07 1.28 7.77 -51.93 -0.40 0.87 16 26 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.08 0.94 5.96 -51.93 -0.31 0.63 16 31 H 0.18 2.49 6.94 -52.48 -0.36 2.13 16 32 H 0.18 2.64 8.06 -52.49 -0.42 2.21 16 LS Contribution 262.44 15.07 3.95 3.95 Total: -1.00 -33.02 262.44 -5.44 -38.46 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -4.28 Total: -0.89 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -1.85 Total: -19.97 kcal Atomic # 7 Polarization: -40.01 SS G_CDS: 1.76 Total: -38.25 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -33.02 -5.44 -38.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260931037.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.467 kcal (2) G-P(sol) polarization free energy of solvation -33.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds