Wall clock time and date at job start Mon Mar 30 2020 03:15:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86797 * 119.99995 * 2 1
4 4 H 1.48494 * 109.47410 * 179.97438 * 3 2 1
5 5 H 1.48494 * 109.47147 * 299.99924 * 3 2 1
6 6 H 1.48504 * 109.47099 * 59.99832 * 3 2 1
7 7 C 1.37881 * 120.00041 * 179.97438 * 2 1 3
8 8 H 1.07994 * 119.99976 * 180.02562 * 7 2 1
9 9 C 1.50702 * 119.99732 * 0.02562 * 7 2 1
10 10 C 1.53000 * 109.46730 * 179.97438 * 9 7 2
11 11 H 1.09002 * 110.01895 * 54.29951 * 10 9 7
12 12 C 1.54273 * 110.07278 * 292.87841 * 10 9 7
13 13 C 1.54888 * 104.19469 * 217.08410 * 12 10 9
14 14 C 1.54882 * 102.74855 * 37.94442 * 13 12 10
15 15 C 1.53873 * 110.03127 * 175.68940 * 10 9 7
16 16 H 1.08996 * 110.03511 * 238.61485 * 15 10 9
17 17 N 1.46497 * 110.03110 * 0.02562 * 15 10 9
18 18 C 1.35310 * 125.87477 * 84.71723 * 17 15 10
19 19 C 1.35347 * 106.18119 * 179.90245 * 18 17 15
20 20 N 1.33768 * 106.49344 * 0.35155 * 19 18 17
21 21 N 1.28634 * 108.88713 * 359.77101 * 20 19 18
22 22 H 0.97004 * 119.99794 * 0.02562 * 1 2 3
23 23 H 1.09000 * 109.47100 * 59.99892 * 9 7 2
24 24 H 1.09003 * 109.46979 * 299.99616 * 9 7 2
25 25 H 1.09001 * 110.48533 * 335.76669 * 12 10 9
26 26 H 1.08999 * 110.48202 * 98.40596 * 12 10 9
27 27 H 1.08998 * 110.75533 * 279.63020 * 13 12 10
28 28 H 1.09003 * 110.74944 * 156.25917 * 13 12 10
29 29 H 1.09000 * 110.49014 * 203.37558 * 14 13 12
30 30 H 1.09001 * 110.48811 * 80.73570 * 14 13 12
31 31 H 1.08007 * 126.90899 * 0.02562 * 18 17 15
32 32 H 1.08002 * 126.75327 * 180.12117 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3464 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0046 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 6 2.2453 -3.6621 0.0005
11 1 2.9420 -3.5573 0.8322
12 6 3.0176 -3.6984 -1.3345
13 6 3.1833 -5.2085 -1.6364
14 6 1.8330 -5.8018 -1.1636
15 6 1.4921 -4.9995 0.1092
16 1 1.8233 -5.5438 0.9935
17 7 0.0489 -4.7583 0.1795
18 6 -0.7780 -4.5819 -0.8770
19 6 -2.0148 -4.3934 -0.3607
20 7 -1.8846 -4.4550 0.9692
21 7 -0.6498 -4.6724 1.2571
22 1 -0.4850 0.8401 -0.0004
23 1 0.6247 -2.5571 -0.8897
24 1 0.6241 -2.5567 0.8904
25 1 2.4411 -3.2129 -2.1220
26 1 3.9918 -3.2221 -1.2246
27 1 4.0110 -5.6282 -1.0646
28 1 3.3260 -5.3755 -2.7041
29 1 1.9427 -6.8606 -0.9291
30 1 1.0653 -5.6561 -1.9235
31 1 -0.5060 -4.5917 -1.9223
32 1 -2.9267 -4.2227 -0.9135
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260931037.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:15:43
Heat of formation + Delta-G solvation = 88.010051 kcal
Electronic energy + Delta-G solvation = -15460.503971 eV
Core-core repulsion = 13036.978353 eV
Total energy + Delta-G solvation = -2423.525618 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 221.122 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-42.66490 -38.26568 -33.16222 -32.83865 -30.51348 -30.22366 -27.77232 -25.98513
-22.94429 -22.12281 -21.72641 -20.19375 -19.10715 -16.93866 -16.50494 -15.38606
-15.01227 -14.55015 -14.50644 -14.09014 -13.21396 -13.00812 -12.38388 -12.05207
-11.73042 -11.42303 -11.08152 -10.98151 -10.86015 -10.71425 -10.57053 -10.39744
-10.22950 -9.88612 -9.46606 -9.15931 -9.10418 -8.68060 -8.34091 -6.00826
-4.04775 2.31278 2.99654 3.27553 3.29028 3.36660 3.39328 4.42636
4.55170 4.79491 5.00003 5.11874 5.34138 5.41608 5.53278 5.59256
5.73512 5.74075 5.87596 5.89903 5.94602 6.14634 6.21663 6.43325
6.61295 6.75941 6.79400 6.88823 7.31009 7.59689 7.70033 7.94602
8.35751 9.01197 9.20547 9.59363 11.09635
Molecular weight = 221.12amu
Principal moments of inertia in cm(-1)
A = 0.025633 B = 0.010952 C = 0.008313
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1092.069506 B = 2556.080573 C = 3367.376785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.887 5.887
2 C 0.059 3.941
3 Si 0.889 3.111
4 H -0.273 1.273
5 H -0.284 1.284
6 H -0.284 1.284
7 C -0.521 4.521
8 H 0.055 0.945
9 C 0.029 3.971
10 C -0.098 4.098
11 H 0.076 0.924
12 C -0.105 4.105
13 C -0.125 4.125
14 C -0.131 4.131
15 C 0.136 3.864
16 H 0.104 0.896
17 N -0.263 5.263
18 C -0.037 4.037
19 C -0.057 4.057
20 N -0.281 5.281
21 N -0.087 5.087
22 H 0.260 0.740
23 H 0.018 0.982
24 H 0.021 0.979
25 H 0.072 0.928
26 H 0.066 0.934
27 H 0.067 0.933
28 H 0.069 0.931
29 H 0.073 0.927
30 H 0.079 0.921
31 H 0.179 0.821
32 H 0.180 0.820
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.620 -11.036 -5.275 12.756
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.526 5.526
2 C -0.143 4.143
3 Si 0.717 3.283
4 H -0.198 1.198
5 H -0.210 1.210
6 H -0.210 1.210
7 C -0.559 4.559
8 H 0.074 0.926
9 C -0.008 4.008
10 C -0.117 4.117
11 H 0.095 0.905
12 C -0.143 4.143
13 C -0.163 4.163
14 C -0.170 4.170
15 C 0.034 3.966
16 H 0.122 0.878
17 N -0.056 5.056
18 C -0.189 4.189
19 C -0.215 4.215
20 N -0.146 5.146
21 N -0.066 5.066
22 H 0.070 0.930
23 H 0.037 0.963
24 H 0.039 0.961
25 H 0.091 0.909
26 H 0.085 0.915
27 H 0.086 0.914
28 H 0.087 0.913
29 H 0.091 0.909
30 H 0.097 0.903
31 H 0.196 0.804
32 H 0.198 0.802
Dipole moment (debyes) X Y Z Total
from point charges 3.495 -10.981 -3.700 12.103
hybrid contribution 0.492 1.206 -1.240 1.798
sum 3.987 -9.775 -4.940 11.655
Atomic orbital electron populations
1.69994 1.05978 1.26474 1.50162 1.25019 0.94793 0.99189 0.95298
0.86581 0.80060 0.84029 0.77603 1.19777 1.21046 1.21024 1.21163
0.92862 0.90744 1.51164 0.92641 1.19250 0.93204 0.90676 0.97647
1.22285 0.98210 0.93195 0.98045 0.90543 1.22335 1.00545 0.93810
0.97579 1.22533 0.95732 0.97189 1.00809 1.22784 0.99240 0.98941
0.96020 1.22624 0.74101 0.99489 1.00404 0.87781 1.47357 1.09588
1.44120 1.04549 1.23267 0.90724 1.09064 0.95836 1.23355 0.98303
1.08104 0.91716 1.74978 1.08849 1.16674 1.14102 1.78164 0.98340
1.19248 1.10892 0.93032 0.96325 0.96063 0.90919 0.91479 0.91400
0.91262 0.90863 0.90257 0.80352 0.80245
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.89 -27.04 13.29 55.43 0.74 -26.31 16
2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16
3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16
4 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16
5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16
6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16
7 C -0.52 -14.43 8.67 -34.44 -0.30 -14.73 16
8 H 0.06 1.48 7.70 -52.49 -0.40 1.08 16
9 C 0.03 0.74 3.24 -27.88 -0.09 0.65 16
10 C -0.10 -1.85 2.88 -89.50 -0.26 -2.11 16
11 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16
12 C -0.10 -1.68 5.87 -25.07 -0.15 -1.83 16
13 C -0.12 -1.47 6.91 -24.74 -0.17 -1.64 16
14 C -0.13 -1.60 6.37 -25.07 -0.16 -1.76 16
15 C 0.14 2.18 3.91 -66.81 -0.26 1.92 16
16 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16
17 N -0.26 -4.96 2.02 -53.68 -0.11 -5.06 16
18 C -0.04 -0.65 8.80 -17.05 -0.15 -0.80 16
19 C -0.06 -1.05 12.05 -17.74 -0.21 -1.27 16
20 N -0.28 -6.11 12.41 30.23 0.38 -5.74 16
21 N -0.09 -1.90 12.48 60.35 0.75 -1.14 16
22 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16
23 H 0.02 0.49 6.56 -51.93 -0.34 0.15 16
24 H 0.02 0.61 7.07 -51.93 -0.37 0.24 16
25 H 0.07 1.28 7.77 -51.93 -0.40 0.87 16
26 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16
27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16
30 H 0.08 0.94 5.96 -51.93 -0.31 0.63 16
31 H 0.18 2.49 6.94 -52.48 -0.36 2.13 16
32 H 0.18 2.64 8.06 -52.49 -0.42 2.21 16
LS Contribution 262.44 15.07 3.95 3.95
Total: -1.00 -33.02 262.44 -5.44 -38.46
By element:
Atomic # 1 Polarization: 3.39 SS G_CDS: -4.28 Total: -0.89 kcal
Atomic # 6 Polarization: -18.13 SS G_CDS: -1.85 Total: -19.97 kcal
Atomic # 7 Polarization: -40.01 SS G_CDS: 1.76 Total: -38.25 kcal
Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal
Total LS contribution 3.95 Total: 3.95 kcal
Total: -33.02 -5.44 -38.46 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260931037.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 126.467 kcal
(2) G-P(sol) polarization free energy of solvation -33.017 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.450 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.440 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.457 kcal
(6) G-S(sol) free energy of system = (1) + (5) 88.010 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds