Wall clock time and date at job start Mon Mar 30 2020 03:15:43
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31517 * 1
3 3 Si 1.86797 * 119.99995 * 2 1
4 4 H 1.48494 * 109.47410 * 179.97438 * 3 2 1
5 5 H 1.48494 * 109.47147 * 299.99924 * 3 2 1
6 6 H 1.48504 * 109.47099 * 59.99832 * 3 2 1
7 7 C 1.37881 * 120.00041 * 179.97438 * 2 1 3
8 8 H 1.07994 * 119.99976 * 180.02562 * 7 2 1
9 9 C 1.50702 * 119.99732 * 0.02562 * 7 2 1
10 10 C 1.53000 * 109.46730 * 179.97438 * 9 7 2
11 11 H 1.09002 * 110.01895 * 54.29951 * 10 9 7
12 12 C 1.54273 * 110.07278 * 292.87841 * 10 9 7
13 13 C 1.54888 * 104.19469 * 217.08410 * 12 10 9
14 14 C 1.54882 * 102.74855 * 37.94442 * 13 12 10
15 15 C 1.53873 * 110.03127 * 175.68940 * 10 9 7
16 16 H 1.08996 * 110.03511 * 238.61485 * 15 10 9
17 17 N 1.46497 * 110.03110 * 0.02562 * 15 10 9
18 18 C 1.35310 * 125.87477 * 84.71723 * 17 15 10
19 19 C 1.35347 * 106.18119 * 179.90245 * 18 17 15
20 20 N 1.33768 * 106.49344 * 0.35155 * 19 18 17
21 21 N 1.28634 * 108.88713 * 359.77101 * 20 19 18
22 22 H 0.97004 * 119.99794 * 0.02562 * 1 2 3
23 23 H 1.09000 * 109.47100 * 59.99892 * 9 7 2
24 24 H 1.09003 * 109.46979 * 299.99616 * 9 7 2
25 25 H 1.09001 * 110.48533 * 335.76669 * 12 10 9
26 26 H 1.08999 * 110.48202 * 98.40596 * 12 10 9
27 27 H 1.08998 * 110.75533 * 279.63020 * 13 12 10
28 28 H 1.09003 * 110.74944 * 156.25917 * 13 12 10
29 29 H 1.09000 * 110.49014 * 203.37558 * 14 13 12
30 30 H 1.09001 * 110.48811 * 80.73570 * 14 13 12
31 31 H 1.08007 * 126.90899 * 0.02562 * 18 17 15
32 32 H 1.08002 * 126.75327 * 180.12117 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2492 1.6177 0.0000
4 1 3.7091 1.3464 0.0006
5 1 1.8904 2.3964 -1.2125
6 1 1.8904 2.3964 1.2125
7 6 2.0046 -1.1941 0.0005
8 1 3.0845 -1.1941 0.0010
9 6 1.2510 -2.4992 0.0005
10 6 2.2453 -3.6621 0.0005
11 1 2.9420 -3.5573 0.8322
12 6 3.0176 -3.6984 -1.3345
13 6 3.1833 -5.2085 -1.6364
14 6 1.8330 -5.8018 -1.1636
15 6 1.4921 -4.9995 0.1092
16 1 1.8233 -5.5438 0.9935
17 7 0.0489 -4.7583 0.1795
18 6 -0.7780 -4.5819 -0.8770
19 6 -2.0148 -4.3934 -0.3607
20 7 -1.8846 -4.4550 0.9692
21 7 -0.6498 -4.6724 1.2571
22 1 -0.4850 0.8401 -0.0004
23 1 0.6247 -2.5571 -0.8897
24 1 0.6241 -2.5567 0.8904
25 1 2.4411 -3.2129 -2.1220
26 1 3.9918 -3.2221 -1.2246
27 1 4.0110 -5.6282 -1.0646
28 1 3.3260 -5.3755 -2.7041
29 1 1.9427 -6.8606 -0.9291
30 1 1.0653 -5.6561 -1.9235
31 1 -0.5060 -4.5917 -1.9223
32 1 -2.9267 -4.2227 -0.9135
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260931037.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:15:43
Heat of formation + Delta-G solvation = 66.470631 kcal
Electronic energy + Delta-G solvation = -15461.437990 eV
Core-core repulsion = 13036.978353 eV
Total energy + Delta-G solvation = -2424.459637 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 221.122 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-44.13250 -39.59571 -35.20545 -34.25093 -32.14387 -31.78124 -29.04213 -27.76194
-24.71135 -23.56749 -23.27228 -21.36544 -20.57286 -18.77014 -18.02602 -17.05529
-16.50300 -16.32786 -15.85026 -15.39829 -14.67693 -14.39788 -14.28585 -13.50584
-13.32001 -13.04644 -12.80398 -12.60030 -12.43894 -12.26076 -11.90957 -11.73391
-11.58665 -11.43339 -11.19266 -11.13075 -10.71544 -10.60269 -10.10284 -8.21095
-6.32238 0.85831 1.34677 1.36133 1.48108 1.66270 1.78963 2.37089
3.12302 3.40412 3.62245 3.76366 3.90133 4.21071 4.34637 4.36534
4.44987 4.50097 4.55306 4.74429 4.88079 4.99275 5.02766 5.12499
5.28710 5.31900 5.39633 5.46311 5.52821 5.69708 5.80387 5.92358
6.20926 6.85228 7.37009 7.69235 8.89895
Molecular weight = 221.12amu
Principal moments of inertia in cm(-1)
A = 0.025633 B = 0.010952 C = 0.008313
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1092.069506 B = 2556.080573 C = 3367.376785
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.930 5.930
2 C -0.001 4.001
3 Si 0.959 3.041
4 H -0.258 1.258
5 H -0.277 1.277
6 H -0.286 1.286
7 C -0.533 4.533
8 H 0.062 0.938
9 C 0.043 3.957
10 C -0.098 4.098
11 H 0.069 0.931
12 C -0.103 4.103
13 C -0.108 4.108
14 C -0.121 4.121
15 C 0.129 3.871
16 H 0.115 0.885
17 N -0.261 5.261
18 C -0.034 4.034
19 C -0.070 4.070
20 N -0.318 5.318
21 N -0.129 5.129
22 H 0.260 0.740
23 H -0.001 1.001
24 H -0.027 1.027
25 H 0.053 0.947
26 H 0.066 0.934
27 H 0.088 0.912
28 H 0.095 0.905
29 H 0.104 0.896
30 H 0.085 0.915
31 H 0.215 0.785
32 H 0.211 0.789
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.484 -12.062 -6.964 14.969
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.571 5.571
2 C -0.198 4.198
3 Si 0.784 3.216
4 H -0.182 1.182
5 H -0.203 1.203
6 H -0.212 1.212
7 C -0.571 4.571
8 H 0.080 0.920
9 C 0.006 3.994
10 C -0.117 4.117
11 H 0.087 0.913
12 C -0.141 4.141
13 C -0.145 4.145
14 C -0.159 4.159
15 C 0.028 3.972
16 H 0.133 0.867
17 N -0.055 5.055
18 C -0.186 4.186
19 C -0.228 4.228
20 N -0.183 5.183
21 N -0.107 5.107
22 H 0.068 0.932
23 H 0.018 0.982
24 H -0.008 1.008
25 H 0.072 0.928
26 H 0.085 0.915
27 H 0.106 0.894
28 H 0.114 0.886
29 H 0.123 0.877
30 H 0.104 0.896
31 H 0.231 0.769
32 H 0.227 0.773
Dipole moment (debyes) X Y Z Total
from point charges 5.387 -12.024 -5.375 14.230
hybrid contribution -0.093 1.554 -0.717 1.714
sum 5.294 -10.470 -6.092 13.220
Atomic orbital electron populations
1.70148 1.07834 1.27330 1.51751 1.25955 0.95603 1.03264 0.95026
0.85484 0.79346 0.79228 0.77522 1.18170 1.20278 1.21226 1.21651
0.93419 0.92060 1.50005 0.91967 1.18991 0.93474 0.92602 0.94320
1.22176 0.97206 0.92477 0.99873 0.91284 1.22257 0.99445 0.97466
0.94918 1.22488 0.96089 0.93109 1.02833 1.22833 0.99485 0.99917
0.93695 1.22924 0.72411 0.98416 1.03482 0.86700 1.47614 1.10473
1.43108 1.04261 1.23882 0.90205 1.07395 0.97076 1.24017 1.00201
1.07673 0.90930 1.74898 1.09362 1.17878 1.16117 1.78076 0.98832
1.21324 1.12497 0.93158 0.98226 1.00830 0.92801 0.91536 0.89356
0.88631 0.87747 0.89618 0.76871 0.77268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16
2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16
3 Si 0.96 44.86 29.54 68.60 2.03 46.89 16
4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16
5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16
6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16
7 C -0.53 -29.90 8.67 25.60 0.22 -29.68 16
8 H 0.06 3.31 7.70 -2.91 -0.02 3.29 16
9 C 0.04 2.23 3.24 29.85 0.10 2.33 16
10 C -0.10 -3.65 2.88 -10.07 -0.03 -3.68 16
11 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16
12 C -0.10 -3.09 5.87 31.67 0.19 -2.90 16
13 C -0.11 -2.05 6.91 31.88 0.22 -1.83 16
14 C -0.12 -2.45 6.37 31.67 0.20 -2.25 16
15 C 0.13 3.94 3.91 45.72 0.18 4.12 16
16 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16
17 N -0.26 -9.79 2.02 -323.74 -0.66 -10.45 16
18 C -0.03 -1.14 8.80 83.49 0.73 -0.41 16
19 C -0.07 -2.58 12.05 83.73 1.01 -1.57 16
20 N -0.32 -14.27 12.41 -58.26 -0.72 -15.00 16
21 N -0.13 -5.77 12.48 37.02 0.46 -5.31 16
22 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16
23 H 0.00 -0.03 6.56 -2.39 -0.02 -0.05 16
24 H -0.03 -1.63 7.07 -2.39 -0.02 -1.64 16
25 H 0.05 1.81 7.77 -2.39 -0.02 1.80 16
26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16
27 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16
28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16
29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16
30 H 0.09 1.66 5.96 -2.39 -0.01 1.64 16
31 H 0.21 5.45 6.94 -2.91 -0.02 5.43 16
32 H 0.21 6.00 8.06 -2.91 -0.02 5.97 16
Total: -1.00 -74.96 262.44 5.78 -69.18
By element:
Atomic # 1 Polarization: 6.95 SS G_CDS: 1.10 Total: 8.05 kcal
Atomic # 6 Polarization: -38.73 SS G_CDS: 3.28 Total: -35.45 kcal
Atomic # 7 Polarization: -88.04 SS G_CDS: -0.63 Total: -88.67 kcal
Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal
Total: -74.96 5.78 -69.18 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260931037.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 135.654 kcal
(2) G-P(sol) polarization free energy of solvation -74.964 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.691 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.184 kcal
(6) G-S(sol) free energy of system = (1) + (5) 66.471 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds