Wall clock time and date at job start Mon Mar 30 2020 03:15:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86797 * 119.99995 * 2 1 4 4 H 1.48494 * 109.47410 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47147 * 299.99924 * 3 2 1 6 6 H 1.48504 * 109.47099 * 59.99832 * 3 2 1 7 7 C 1.37881 * 120.00041 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99976 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99732 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46730 * 179.97438 * 9 7 2 11 11 H 1.09002 * 110.01895 * 54.29951 * 10 9 7 12 12 C 1.54273 * 110.07278 * 292.87841 * 10 9 7 13 13 C 1.54888 * 104.19469 * 217.08410 * 12 10 9 14 14 C 1.54882 * 102.74855 * 37.94442 * 13 12 10 15 15 C 1.53873 * 110.03127 * 175.68940 * 10 9 7 16 16 H 1.08996 * 110.03511 * 238.61485 * 15 10 9 17 17 N 1.46497 * 110.03110 * 0.02562 * 15 10 9 18 18 C 1.35310 * 125.87477 * 84.71723 * 17 15 10 19 19 C 1.35347 * 106.18119 * 179.90245 * 18 17 15 20 20 N 1.33768 * 106.49344 * 0.35155 * 19 18 17 21 21 N 1.28634 * 108.88713 * 359.77101 * 20 19 18 22 22 H 0.97004 * 119.99794 * 0.02562 * 1 2 3 23 23 H 1.09000 * 109.47100 * 59.99892 * 9 7 2 24 24 H 1.09003 * 109.46979 * 299.99616 * 9 7 2 25 25 H 1.09001 * 110.48533 * 335.76669 * 12 10 9 26 26 H 1.08999 * 110.48202 * 98.40596 * 12 10 9 27 27 H 1.08998 * 110.75533 * 279.63020 * 13 12 10 28 28 H 1.09003 * 110.74944 * 156.25917 * 13 12 10 29 29 H 1.09000 * 110.49014 * 203.37558 * 14 13 12 30 30 H 1.09001 * 110.48811 * 80.73570 * 14 13 12 31 31 H 1.08007 * 126.90899 * 0.02562 * 18 17 15 32 32 H 1.08002 * 126.75327 * 180.12117 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6621 0.0005 11 1 2.9420 -3.5573 0.8322 12 6 3.0176 -3.6984 -1.3345 13 6 3.1833 -5.2085 -1.6364 14 6 1.8330 -5.8018 -1.1636 15 6 1.4921 -4.9995 0.1092 16 1 1.8233 -5.5438 0.9935 17 7 0.0489 -4.7583 0.1795 18 6 -0.7780 -4.5819 -0.8770 19 6 -2.0148 -4.3934 -0.3607 20 7 -1.8846 -4.4550 0.9692 21 7 -0.6498 -4.6724 1.2571 22 1 -0.4850 0.8401 -0.0004 23 1 0.6247 -2.5571 -0.8897 24 1 0.6241 -2.5567 0.8904 25 1 2.4411 -3.2129 -2.1220 26 1 3.9918 -3.2221 -1.2246 27 1 4.0110 -5.6282 -1.0646 28 1 3.3260 -5.3755 -2.7041 29 1 1.9427 -6.8606 -0.9291 30 1 1.0653 -5.6561 -1.9235 31 1 -0.5060 -4.5917 -1.9223 32 1 -2.9267 -4.2227 -0.9135 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260931037.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:15:43 Heat of formation + Delta-G solvation = 66.470631 kcal Electronic energy + Delta-G solvation = -15461.437990 eV Core-core repulsion = 13036.978353 eV Total energy + Delta-G solvation = -2424.459637 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.13250 -39.59571 -35.20545 -34.25093 -32.14387 -31.78124 -29.04213 -27.76194 -24.71135 -23.56749 -23.27228 -21.36544 -20.57286 -18.77014 -18.02602 -17.05529 -16.50300 -16.32786 -15.85026 -15.39829 -14.67693 -14.39788 -14.28585 -13.50584 -13.32001 -13.04644 -12.80398 -12.60030 -12.43894 -12.26076 -11.90957 -11.73391 -11.58665 -11.43339 -11.19266 -11.13075 -10.71544 -10.60269 -10.10284 -8.21095 -6.32238 0.85831 1.34677 1.36133 1.48108 1.66270 1.78963 2.37089 3.12302 3.40412 3.62245 3.76366 3.90133 4.21071 4.34637 4.36534 4.44987 4.50097 4.55306 4.74429 4.88079 4.99275 5.02766 5.12499 5.28710 5.31900 5.39633 5.46311 5.52821 5.69708 5.80387 5.92358 6.20926 6.85228 7.37009 7.69235 8.89895 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025633 B = 0.010952 C = 0.008313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.069506 B = 2556.080573 C = 3367.376785 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.001 4.001 3 Si 0.959 3.041 4 H -0.258 1.258 5 H -0.277 1.277 6 H -0.286 1.286 7 C -0.533 4.533 8 H 0.062 0.938 9 C 0.043 3.957 10 C -0.098 4.098 11 H 0.069 0.931 12 C -0.103 4.103 13 C -0.108 4.108 14 C -0.121 4.121 15 C 0.129 3.871 16 H 0.115 0.885 17 N -0.261 5.261 18 C -0.034 4.034 19 C -0.070 4.070 20 N -0.318 5.318 21 N -0.129 5.129 22 H 0.260 0.740 23 H -0.001 1.001 24 H -0.027 1.027 25 H 0.053 0.947 26 H 0.066 0.934 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.215 0.785 32 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.484 -12.062 -6.964 14.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.784 3.216 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.212 1.212 7 C -0.571 4.571 8 H 0.080 0.920 9 C 0.006 3.994 10 C -0.117 4.117 11 H 0.087 0.913 12 C -0.141 4.141 13 C -0.145 4.145 14 C -0.159 4.159 15 C 0.028 3.972 16 H 0.133 0.867 17 N -0.055 5.055 18 C -0.186 4.186 19 C -0.228 4.228 20 N -0.183 5.183 21 N -0.107 5.107 22 H 0.068 0.932 23 H 0.018 0.982 24 H -0.008 1.008 25 H 0.072 0.928 26 H 0.085 0.915 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.231 0.769 32 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 5.387 -12.024 -5.375 14.230 hybrid contribution -0.093 1.554 -0.717 1.714 sum 5.294 -10.470 -6.092 13.220 Atomic orbital electron populations 1.70148 1.07834 1.27330 1.51751 1.25955 0.95603 1.03264 0.95026 0.85484 0.79346 0.79228 0.77522 1.18170 1.20278 1.21226 1.21651 0.93419 0.92060 1.50005 0.91967 1.18991 0.93474 0.92602 0.94320 1.22176 0.97206 0.92477 0.99873 0.91284 1.22257 0.99445 0.97466 0.94918 1.22488 0.96089 0.93109 1.02833 1.22833 0.99485 0.99917 0.93695 1.22924 0.72411 0.98416 1.03482 0.86700 1.47614 1.10473 1.43108 1.04261 1.23882 0.90205 1.07395 0.97076 1.24017 1.00201 1.07673 0.90930 1.74898 1.09362 1.17878 1.16117 1.78076 0.98832 1.21324 1.12497 0.93158 0.98226 1.00830 0.92801 0.91536 0.89356 0.88631 0.87747 0.89618 0.76871 0.77268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.20 13.29 21.45 0.28 -57.91 16 2 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 3 Si 0.96 44.86 29.54 68.60 2.03 46.89 16 4 H -0.26 -11.31 7.11 99.48 0.71 -10.61 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 7 C -0.53 -29.90 8.67 25.60 0.22 -29.68 16 8 H 0.06 3.31 7.70 -2.91 -0.02 3.29 16 9 C 0.04 2.23 3.24 29.85 0.10 2.33 16 10 C -0.10 -3.65 2.88 -10.07 -0.03 -3.68 16 11 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 12 C -0.10 -3.09 5.87 31.67 0.19 -2.90 16 13 C -0.11 -2.05 6.91 31.88 0.22 -1.83 16 14 C -0.12 -2.45 6.37 31.67 0.20 -2.25 16 15 C 0.13 3.94 3.91 45.72 0.18 4.12 16 16 H 0.12 3.23 8.14 -2.39 -0.02 3.21 16 17 N -0.26 -9.79 2.02 -323.74 -0.66 -10.45 16 18 C -0.03 -1.14 8.80 83.49 0.73 -0.41 16 19 C -0.07 -2.58 12.05 83.73 1.01 -1.57 16 20 N -0.32 -14.27 12.41 -58.26 -0.72 -15.00 16 21 N -0.13 -5.77 12.48 37.02 0.46 -5.31 16 22 H 0.26 15.41 8.31 -92.71 -0.77 14.64 16 23 H 0.00 -0.03 6.56 -2.39 -0.02 -0.05 16 24 H -0.03 -1.63 7.07 -2.39 -0.02 -1.64 16 25 H 0.05 1.81 7.77 -2.39 -0.02 1.80 16 26 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 29 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 30 H 0.09 1.66 5.96 -2.39 -0.01 1.64 16 31 H 0.21 5.45 6.94 -2.91 -0.02 5.43 16 32 H 0.21 6.00 8.06 -2.91 -0.02 5.97 16 Total: -1.00 -74.96 262.44 5.78 -69.18 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 1.10 Total: 8.05 kcal Atomic # 6 Polarization: -38.73 SS G_CDS: 3.28 Total: -35.45 kcal Atomic # 7 Polarization: -88.04 SS G_CDS: -0.63 Total: -88.67 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.03 Total: 46.89 kcal Total: -74.96 5.78 -69.18 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260931037.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.654 kcal (2) G-P(sol) polarization free energy of solvation -74.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds