Wall clock time and date at job start Mon Mar 30 2020 03:19:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00150 * 2 1 4 4 H 1.48509 * 109.47231 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.47768 * 300.00389 * 3 2 1 6 6 H 1.48503 * 109.47105 * 60.00476 * 3 2 1 7 7 C 1.37884 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99554 * 179.72247 * 7 2 1 9 9 C 1.50698 * 119.99760 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.47116 * 299.71907 * 9 7 2 11 11 C 1.52997 * 109.47714 * 59.72388 * 9 7 2 12 12 C 1.53003 * 109.47006 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.47181 * 299.99516 * 12 11 9 14 14 C 1.52997 * 109.46756 * 60.00331 * 13 12 11 15 15 H 1.09004 * 109.46918 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47457 * 60.00064 * 14 13 12 17 17 C 1.35494 * 126.98182 * 209.82707 * 16 14 13 18 18 N 1.30526 * 107.30433 * 179.83216 * 17 16 14 19 19 N 1.28592 * 109.67411 * 0.43769 * 18 17 16 20 20 C 1.30526 * 109.67622 * 359.72225 * 19 18 17 21 21 C 1.53004 * 109.47521 * 299.99654 * 14 13 12 22 22 H 0.97002 * 119.99663 * 359.97438 * 1 2 3 23 23 H 1.09004 * 109.46918 * 299.99862 * 11 9 7 24 24 H 1.09000 * 109.47222 * 59.99584 * 11 9 7 25 25 H 1.09001 * 109.46930 * 60.00268 * 12 11 9 26 26 H 1.09003 * 109.46398 * 179.97438 * 12 11 9 27 27 H 1.08996 * 109.47224 * 179.97438 * 13 12 11 28 28 H 1.09000 * 109.47094 * 300.00449 * 13 12 11 29 29 H 1.07993 * 126.34466 * 359.97438 * 17 16 14 30 30 H 1.07994 * 126.35173 * 179.97438 * 20 19 18 31 31 H 1.08996 * 109.46824 * 300.00444 * 21 14 13 32 32 H 1.08997 * 109.46976 * 179.97438 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0051 9 6 1.2509 -2.4992 -0.0017 10 1 0.6277 -2.5596 0.8905 11 6 0.3666 -2.5764 -1.2478 12 6 -0.3990 -3.9012 -1.2485 13 6 0.5948 -5.0645 -1.2556 14 6 1.4792 -4.9872 -0.0095 15 1 2.1869 -5.8162 -0.0143 16 7 0.6415 -5.0678 1.1897 17 6 0.8918 -4.5080 2.3979 18 7 -0.1036 -4.8181 3.1833 19 7 -0.9512 -5.5423 2.5424 20 6 -0.5381 -5.7222 1.3174 21 6 2.2448 -3.6625 -0.0087 22 1 -0.4850 0.8401 0.0004 23 1 -0.3417 -1.7479 -1.2425 24 1 0.9898 -2.5160 -2.1400 25 1 -1.0223 -3.9611 -0.3563 26 1 -1.0294 -3.9559 -2.1360 27 1 0.0494 -6.0082 -1.2556 28 1 1.2180 -5.0044 -2.1478 29 1 1.7539 -3.9133 2.6615 30 1 -1.0427 -6.2881 0.5483 31 1 2.8680 -3.6025 -0.9009 32 1 2.8744 -3.6073 0.8793 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260938169.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:57 Heat of formation + Delta-G solvation = 47.244429 kcal Electronic energy + Delta-G solvation = -15650.056209 eV Core-core repulsion = 13224.762861 eV Total energy + Delta-G solvation = -2425.293348 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -44.01747 -39.56543 -35.53884 -33.93577 -32.23976 -30.98220 -30.46040 -26.88791 -24.63726 -23.35125 -22.44141 -22.20798 -20.67964 -18.59567 -17.66074 -17.06782 -16.56571 -15.95632 -15.56407 -15.40692 -14.82191 -14.64367 -14.11502 -13.50200 -13.38006 -13.16495 -12.90623 -12.54788 -12.31118 -12.18772 -11.83685 -11.72665 -11.39343 -11.28260 -11.16832 -10.68764 -10.47965 -10.33672 -10.20586 -8.08990 -6.23121 1.09311 1.37229 1.40852 1.49995 1.81264 2.04312 2.41379 3.19124 3.56832 3.81335 3.86688 3.93230 4.08244 4.40128 4.52341 4.59414 4.61346 4.74939 4.81991 5.00119 5.04497 5.11693 5.15158 5.30752 5.35413 5.46351 5.61035 5.66358 6.00457 6.15202 6.22194 6.38194 6.92817 7.46233 7.86722 8.94176 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.034463 B = 0.009632 C = 0.008802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.276930 B = 2906.156041 C = 3180.447572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.011 3.989 3 Si 0.946 3.054 4 H -0.262 1.262 5 H -0.284 1.284 6 H -0.289 1.289 7 C -0.528 4.528 8 H 0.057 0.943 9 C 0.048 3.952 10 H -0.007 1.007 11 C -0.110 4.110 12 C -0.117 4.117 13 C -0.116 4.116 14 C 0.136 3.864 15 H 0.126 0.874 16 N -0.451 5.451 17 C 0.165 3.835 18 N -0.352 5.352 19 N -0.352 5.352 20 C 0.159 3.841 21 C -0.116 4.116 22 H 0.256 0.744 23 H 0.046 0.954 24 H 0.037 0.963 25 H 0.032 0.968 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.103 0.897 29 H 0.221 0.779 30 H 0.248 0.752 31 H 0.088 0.912 32 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.291 -11.206 -5.050 13.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.773 3.227 4 H -0.186 1.186 5 H -0.210 1.210 6 H -0.215 1.215 7 C -0.566 4.566 8 H 0.076 0.924 9 C 0.029 3.971 10 H 0.011 0.989 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.154 4.154 14 C 0.035 3.965 15 H 0.144 0.856 16 N -0.140 5.140 17 C -0.125 4.125 18 N -0.192 5.192 19 N -0.191 5.191 20 C -0.130 4.130 21 C -0.153 4.153 22 H 0.065 0.935 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.115 0.885 28 H 0.122 0.878 29 H 0.238 0.762 30 H 0.264 0.736 31 H 0.107 0.893 32 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.313 -11.167 -3.843 12.265 hybrid contribution 0.861 1.725 -0.933 2.142 sum 4.173 -9.441 -4.776 11.374 Atomic orbital electron populations 1.70056 1.07317 1.26672 1.51805 1.25717 0.95446 1.02374 0.95223 0.85679 0.79490 0.80356 0.77169 1.18568 1.21006 1.21495 1.21661 0.93176 0.92132 1.49666 0.92436 1.18589 0.92874 0.92055 0.93563 0.98936 1.21476 0.98936 0.96282 0.98110 1.21556 0.97943 0.95577 1.00377 1.21888 0.97956 0.98945 0.96592 1.21972 0.92328 1.00448 0.81767 0.85628 1.46677 1.18567 1.37014 1.11745 1.26523 1.02126 1.00954 0.82872 1.74080 1.02013 1.14724 1.28387 1.74037 1.23641 1.16534 1.04923 1.26856 0.87324 1.00621 0.98215 1.21914 0.98077 0.92439 1.02901 0.93493 0.93527 0.94465 0.94918 0.91654 0.88529 0.87814 0.76231 0.73613 0.89344 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.25 11.30 21.45 0.24 -53.01 16 2 C 0.01 0.58 5.30 84.66 0.45 1.03 16 3 Si 0.95 42.98 29.54 68.60 2.03 45.00 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.56 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 6 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 7 C -0.53 -27.15 8.57 25.60 0.22 -26.93 16 8 H 0.06 2.86 7.74 -2.91 -0.02 2.83 16 9 C 0.05 2.13 1.89 -11.54 -0.02 2.10 16 10 H -0.01 -0.39 6.41 -2.39 -0.02 -0.41 16 11 C -0.11 -4.72 4.98 30.59 0.15 -4.57 16 12 C -0.12 -3.77 5.71 30.59 0.17 -3.60 16 13 C -0.12 -2.55 5.05 30.59 0.15 -2.39 16 14 C 0.14 3.32 3.59 44.99 0.16 3.49 16 15 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 16 N -0.45 -13.56 2.24 -510.91 -1.14 -14.71 16 17 C 0.16 5.88 10.38 180.11 1.87 7.75 16 18 N -0.35 -14.59 12.21 -59.99 -0.73 -15.33 16 19 N -0.35 -13.68 12.21 -59.99 -0.73 -14.42 16 20 C 0.16 4.77 10.38 180.11 1.87 6.64 16 21 C -0.12 -3.69 4.27 30.60 0.13 -3.56 16 22 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 23 H 0.05 2.44 6.05 -2.39 -0.01 2.43 16 24 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 25 H 0.03 1.20 6.41 -2.39 -0.02 1.18 16 26 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.10 1.48 7.22 -2.39 -0.02 1.46 16 28 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.22 7.10 7.29 -2.91 -0.02 7.08 16 30 H 0.25 4.97 7.29 -2.91 -0.02 4.95 16 31 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 32 H 0.06 1.92 7.22 -2.39 -0.02 1.90 16 Total: -1.00 -68.51 253.58 5.93 -62.58 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: 1.11 Total: 9.91 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 5.16 Total: -20.04 kcal Atomic # 7 Polarization: -95.09 SS G_CDS: -2.37 Total: -97.46 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.00 kcal Total: -68.51 5.93 -62.58 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260938169.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.828 kcal (2) G-P(sol) polarization free energy of solvation -68.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds