Wall clock time and date at job start Mon Mar 30 2020 03:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99609 * 2 1 4 4 H 1.48508 * 109.47191 * 270.00174 * 3 2 1 5 5 H 1.48499 * 109.47437 * 30.00223 * 3 2 1 6 6 H 1.48506 * 109.46828 * 150.00398 * 3 2 1 7 7 C 1.37873 * 120.00416 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00405 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99690 * 0.02562 * 7 2 1 10 10 H 1.08992 * 109.47518 * 59.99911 * 9 7 2 11 11 C 1.53000 * 109.46735 * 299.99566 * 9 7 2 12 12 C 1.52997 * 109.47060 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47317 * 59.99960 * 12 11 9 14 14 C 1.53005 * 109.47159 * 300.00546 * 13 12 11 15 15 H 1.09002 * 109.46935 * 299.99411 * 14 13 12 16 16 N 1.46500 * 109.47094 * 179.97438 * 14 13 12 17 17 C 1.35320 * 125.86968 * 325.00105 * 16 14 13 18 18 C 1.35348 * 106.17360 * 179.97438 * 17 16 14 19 19 N 1.33772 * 106.49778 * 359.97438 * 18 17 16 20 20 N 1.28630 * 108.88669 * 359.73359 * 19 18 17 21 21 C 1.52997 * 109.47452 * 59.99536 * 14 13 12 22 22 H 0.97001 * 120.00306 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47398 * 300.00410 * 11 9 7 24 24 H 1.09001 * 109.47194 * 60.00591 * 11 9 7 25 25 H 1.08996 * 109.47853 * 180.02562 * 12 11 9 26 26 H 1.09002 * 109.47153 * 300.00319 * 12 11 9 27 27 H 1.09000 * 109.47486 * 180.02562 * 13 12 11 28 28 H 1.09002 * 109.46716 * 60.00091 * 13 12 11 29 29 H 1.07998 * 126.91078 * 359.97438 * 17 16 14 30 30 H 1.07999 * 126.75242 * 180.02562 * 18 17 16 31 31 H 1.08993 * 109.47194 * 179.97438 * 21 14 13 32 32 H 1.09002 * 109.46695 * 59.99734 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 6 0.3711 -2.5810 1.2472 12 6 -0.3934 -3.9063 1.2464 13 6 0.6012 -5.0688 1.2463 14 6 1.4813 -4.9869 -0.0026 15 1 0.8550 -5.0446 -0.8929 16 7 2.4341 -6.0998 -0.0025 17 6 3.0219 -6.6402 1.0901 18 6 3.8201 -7.6343 0.6358 19 7 3.6831 -7.6536 -0.6947 20 7 2.8506 -6.7362 -1.0409 21 6 2.2458 -3.6617 -0.0018 22 1 -0.4850 0.8400 0.0004 23 1 0.9975 -2.5238 2.1375 24 1 -0.3373 -1.7525 1.2475 25 1 -1.0207 -3.9645 2.1359 26 1 -1.0197 -3.9639 0.3562 27 1 0.0566 -6.0130 1.2453 28 1 1.2275 -5.0112 2.1365 29 1 2.8821 -6.3388 2.1177 30 1 4.4443 -8.2847 1.2306 31 1 2.8731 -3.6036 -0.8913 32 1 2.8721 -3.6041 0.8885 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260942560.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:03 Heat of formation + Delta-G solvation = 58.862440 kcal Electronic energy + Delta-G solvation = -15124.788967 eV Core-core repulsion = 12699.999414 eV Total energy + Delta-G solvation = -2424.789553 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -44.17205 -39.56781 -35.62836 -34.10360 -32.04913 -31.68063 -30.32927 -26.89595 -24.73037 -23.70656 -22.81421 -22.00802 -20.45124 -18.96610 -17.82236 -17.09691 -16.59294 -16.02491 -15.70784 -14.99456 -14.88848 -14.73368 -14.29702 -13.69170 -13.42020 -12.89465 -12.68751 -12.61340 -12.52331 -12.20212 -12.00229 -11.87437 -11.79035 -11.38755 -11.17883 -10.94181 -10.59228 -10.37385 -10.27638 -8.11451 -6.24867 0.74725 1.39582 1.41773 1.47610 1.51250 1.68578 2.41773 3.16235 3.41812 3.73388 3.79412 4.01656 4.23775 4.30875 4.37048 4.43558 4.57747 4.65499 4.71242 4.86612 4.92430 5.05241 5.11104 5.21482 5.34719 5.39876 5.57289 5.64774 5.74259 5.96670 6.17036 6.36502 6.85276 7.43460 7.59594 8.92429 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.042956 B = 0.007296 C = 0.006618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.666451 B = 3836.557242 C = 4230.117123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.020 3.980 3 Si 0.947 3.053 4 H -0.280 1.280 5 H -0.280 1.280 6 H -0.270 1.270 7 C -0.538 4.538 8 H 0.047 0.953 9 C 0.053 3.947 10 H 0.000 1.000 11 C -0.109 4.109 12 C -0.107 4.107 13 C -0.108 4.108 14 C 0.146 3.854 15 H 0.098 0.902 16 N -0.278 5.278 17 C -0.039 4.039 18 C -0.062 4.062 19 N -0.315 5.315 20 N -0.136 5.136 21 C -0.099 4.099 22 H 0.262 0.738 23 H 0.039 0.961 24 H 0.063 0.937 25 H 0.082 0.918 26 H 0.052 0.948 27 H 0.086 0.914 28 H 0.090 0.910 29 H 0.224 0.776 30 H 0.223 0.777 31 H 0.036 0.964 32 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.302 -9.987 7.021 12.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.180 4.180 3 Si 0.773 3.227 4 H -0.206 1.206 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.576 4.576 8 H 0.065 0.935 9 C 0.034 3.966 10 H 0.018 0.982 11 C -0.147 4.147 12 C -0.145 4.145 13 C -0.146 4.146 14 C 0.045 3.955 15 H 0.116 0.884 16 N -0.071 5.071 17 C -0.191 4.191 18 C -0.220 4.220 19 N -0.179 5.179 20 N -0.115 5.115 21 C -0.137 4.137 22 H 0.071 0.929 23 H 0.057 0.943 24 H 0.082 0.918 25 H 0.101 0.899 26 H 0.071 0.929 27 H 0.105 0.895 28 H 0.109 0.891 29 H 0.241 0.759 30 H 0.240 0.760 31 H 0.055 0.945 32 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.067 -9.987 5.437 11.421 hybrid contribution 0.441 1.408 0.713 1.639 sum 1.508 -8.579 6.150 10.662 Atomic orbital electron populations 1.69976 1.06865 1.27200 1.50972 1.25610 0.95644 1.01968 0.94761 0.85723 0.78891 0.79981 0.78066 1.20630 1.20580 1.19495 1.21493 0.92864 0.92215 1.51031 0.93491 1.18559 0.92581 0.90881 0.94578 0.98232 1.21506 0.98956 0.96825 0.97380 1.21492 0.97201 0.93621 1.02223 1.21847 0.97411 1.00100 0.95267 1.21960 0.88483 0.82156 1.02878 0.88400 1.47962 1.30048 1.23839 1.05277 1.24317 0.99831 0.98557 0.96396 1.24252 1.04352 1.02203 0.91239 1.75005 1.13011 1.15005 1.14894 1.78274 1.12970 1.06125 1.14112 1.21823 0.98538 0.92528 1.00850 0.92892 0.94268 0.91799 0.89909 0.92887 0.89538 0.89111 0.75924 0.76014 0.94498 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.19 11.32 21.45 0.24 -49.95 16 2 C 0.02 1.04 5.30 84.65 0.45 1.49 16 3 Si 0.95 42.46 29.54 68.60 2.03 44.49 16 4 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 5 H -0.28 -12.24 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 7 C -0.54 -28.52 8.56 25.60 0.22 -28.30 16 8 H 0.05 2.50 7.74 -2.91 -0.02 2.47 16 9 C 0.05 2.46 2.10 -11.54 -0.02 2.43 16 10 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 11 C -0.11 -4.48 4.98 30.59 0.15 -4.33 16 12 C -0.11 -3.27 5.92 30.59 0.18 -3.08 16 13 C -0.11 -2.71 4.84 30.60 0.15 -2.56 16 14 C 0.15 4.59 3.12 44.99 0.14 4.74 16 15 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 16 N -0.28 -8.63 3.25 -327.16 -1.06 -9.69 16 17 C -0.04 -0.93 10.69 83.49 0.89 -0.04 16 18 C -0.06 -1.54 12.05 83.73 1.01 -0.53 16 19 N -0.31 -10.73 12.41 -58.26 -0.72 -11.45 16 20 N -0.14 -5.00 13.16 37.02 0.49 -4.51 16 21 C -0.10 -3.80 4.74 30.59 0.15 -3.66 16 22 H 0.26 13.78 8.31 -92.71 -0.77 13.01 16 23 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 25 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.09 1.95 7.17 -2.39 -0.02 1.93 16 29 H 0.22 3.34 7.30 -2.91 -0.02 3.32 16 30 H 0.22 3.41 8.06 -2.91 -0.02 3.38 16 31 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 Total: -1.00 -63.35 263.11 5.38 -57.97 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: 1.10 Total: 6.98 kcal Atomic # 6 Polarization: -37.15 SS G_CDS: 3.31 Total: -33.83 kcal Atomic # 7 Polarization: -74.55 SS G_CDS: -1.06 Total: -75.60 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -63.35 5.38 -57.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260942560.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.836 kcal (2) G-P(sol) polarization free energy of solvation -63.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds