Wall clock time and date at job start Mon Mar 30 2020 02:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48493 * 109.47437 * 240.00083 * 3 2 1 5 5 H 1.48504 * 109.47037 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46956 * 119.99848 * 3 2 1 7 7 C 1.37872 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99945 * 182.34124 * 7 2 1 9 9 C 1.50699 * 120.00047 * 2.34053 * 7 2 1 10 10 C 1.53002 * 109.71387 * 297.93723 * 9 7 2 11 11 N 1.46897 * 109.47405 * 305.96513 * 10 9 7 12 12 C 1.53371 * 109.71446 * 58.54458 * 9 7 2 13 13 C 1.53057 * 109.73808 * 69.09670 * 12 9 7 14 14 C 1.53392 * 109.75406 * 71.65821 * 13 12 9 15 15 C 1.50880 * 108.19293 * 309.44604 * 14 13 12 16 16 C 1.34576 * 128.33061 * 196.70022 * 15 14 13 17 17 N 1.35198 * 107.62105 * 179.83908 * 16 15 14 18 18 H 0.96995 * 125.99934 * 180.02562 * 17 16 15 19 19 N 1.40308 * 107.98879 * 0.03855 * 17 16 15 20 20 C 1.30124 * 108.13054 * 0.02957 * 19 17 16 21 21 H 0.97001 * 119.99946 * 359.97438 * 1 2 3 22 22 H 1.08999 * 109.46522 * 65.95878 * 10 9 7 23 23 H 1.08996 * 109.47345 * 185.95761 * 10 9 7 24 24 H 1.00894 * 111.00480 * 179.97438 * 11 10 9 25 25 H 1.00905 * 110.99790 * 303.94862 * 11 10 9 26 26 H 1.09007 * 109.42349 * 189.15019 * 12 9 7 27 27 H 1.09001 * 109.42437 * 308.97002 * 12 9 7 28 28 H 1.08997 * 109.40990 * 311.57358 * 13 12 9 29 29 H 1.08995 * 109.37216 * 191.71272 * 13 12 9 30 30 H 1.08999 * 109.71544 * 189.77894 * 14 13 12 31 31 H 1.08991 * 109.75888 * 69.14524 * 14 13 12 32 32 H 1.08000 * 126.18618 * 359.80326 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0839 -1.1944 0.0377 9 6 1.2521 -2.4985 -0.0544 10 6 0.3652 -2.6343 1.1849 11 7 1.1825 -2.4620 2.3933 12 6 0.3850 -2.5438 -1.3187 13 6 1.2800 -2.6515 -2.5557 14 6 1.9017 -4.0520 -2.6255 15 6 2.5234 -4.3588 -1.2854 16 6 3.4237 -5.3118 -0.9815 17 7 3.6955 -5.2119 0.3391 18 1 4.3111 -5.7710 0.8384 19 7 2.9305 -4.1575 0.8604 20 6 2.2289 -3.6480 -0.1099 21 1 -0.4850 0.8401 0.0004 22 1 -0.4125 -1.8710 1.1605 23 1 -0.0955 -3.6221 1.1956 24 1 0.6192 -2.5469 3.2260 25 1 1.9499 -3.1171 2.4072 26 1 -0.2764 -3.4091 -1.2739 27 1 -0.2129 -1.6346 -1.3810 28 1 2.0725 -1.9056 -2.4954 29 1 0.6831 -2.4749 -3.4503 30 1 2.6679 -4.0761 -3.4004 31 1 1.1290 -4.7874 -2.8494 32 1 3.8512 -6.0274 -1.6682 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260948197.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:23 Heat of formation + Delta-G solvation = 70.903362 kcal Electronic energy + Delta-G solvation = -15839.366105 eV Core-core repulsion = 13415.098685 eV Total energy + Delta-G solvation = -2424.267420 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.66347 -36.52958 -33.61599 -31.83858 -30.38508 -29.33720 -27.81814 -24.86601 -23.67078 -21.67195 -20.67030 -19.50452 -17.80386 -16.85898 -15.62814 -14.72443 -14.49514 -14.04159 -13.59154 -13.35122 -13.17163 -12.43059 -12.35703 -11.98694 -11.45361 -11.30010 -10.78067 -10.67220 -10.39736 -10.19190 -10.05055 -9.83480 -9.38276 -9.08486 -9.00036 -8.32796 -8.16429 -7.66533 -7.13391 -5.80680 -3.82981 2.61780 3.45409 3.48347 3.52150 3.57657 3.71710 4.61644 5.33645 5.44360 5.54782 5.88059 5.97935 6.12748 6.14883 6.38253 6.51120 6.65418 6.68395 6.76856 6.80574 6.98782 7.18570 7.31086 7.53105 7.54488 7.76374 7.90116 7.97927 8.22983 8.44771 8.58332 8.74665 8.93318 9.08894 9.77442 11.23061 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.029113 B = 0.012389 C = 0.011167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.523415 B = 2259.479748 C = 2506.692225 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.072 3.928 3 Si 0.892 3.108 4 H -0.282 1.282 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.458 4.458 8 H 0.049 0.951 9 C 0.147 3.853 10 C 0.086 3.914 11 N -0.828 5.828 12 C -0.105 4.105 13 C -0.108 4.108 14 C -0.038 4.038 15 C -0.235 4.235 16 C 0.036 3.964 17 N -0.507 5.507 18 H 0.427 0.573 19 N -0.304 5.304 20 C 0.133 3.867 21 H 0.258 0.742 22 H 0.100 0.900 23 H -0.028 1.028 24 H 0.309 0.691 25 H 0.336 0.664 26 H 0.020 0.980 27 H 0.104 0.896 28 H 0.072 0.928 29 H 0.043 0.957 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.787 -8.602 -3.071 9.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.128 4.128 3 Si 0.721 3.279 4 H -0.208 1.208 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.497 4.497 8 H 0.068 0.932 9 C 0.144 3.856 10 C -0.046 4.046 11 N -0.358 5.358 12 C -0.144 4.144 13 C -0.146 4.146 14 C -0.076 4.076 15 C -0.247 4.247 16 C -0.109 4.109 17 N -0.214 5.214 18 H 0.269 0.731 19 N -0.124 5.124 20 C -0.036 4.036 21 H 0.068 0.932 22 H 0.118 0.882 23 H -0.010 1.010 24 H 0.118 0.882 25 H 0.152 0.848 26 H 0.039 0.961 27 H 0.122 0.878 28 H 0.091 0.909 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.085 -7.693 -2.134 8.559 hybrid contribution 0.555 -0.655 -0.348 0.926 sum 3.640 -8.349 -2.482 9.440 Atomic orbital electron populations 1.69735 1.05641 1.26078 1.51840 1.24690 0.94726 0.98370 0.95019 0.86659 0.79535 0.83384 0.78311 1.20762 1.21612 1.20468 1.20496 0.92215 0.88489 1.48498 0.93228 1.17084 0.88631 0.88040 0.91822 1.21800 0.96543 0.95697 0.90529 1.58649 1.13640 1.60675 1.02820 1.21611 0.97429 1.01605 0.93734 1.21487 0.99832 0.95401 0.97836 1.19990 0.97805 0.98058 0.91737 1.20278 1.05364 1.01091 0.97983 1.21834 1.00691 1.01355 0.87054 1.46377 1.38439 1.29709 1.06878 0.73113 1.76815 1.10622 1.02308 1.22646 1.23323 0.95330 0.95679 0.89302 0.93208 0.88223 1.01038 0.88171 0.84817 0.96089 0.87784 0.90923 0.93782 0.92773 0.92716 0.82076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.26 9.48 55.43 0.53 -23.74 16 2 C 0.07 1.94 5.12 -17.82 -0.09 1.85 16 3 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 7 C -0.46 -12.44 6.53 -34.44 -0.22 -12.67 16 8 H 0.05 1.43 7.75 -52.49 -0.41 1.03 16 9 C 0.15 3.62 0.34 -156.50 -0.05 3.57 16 10 C 0.09 2.10 5.47 -3.82 -0.02 2.08 16 11 N -0.83 -19.46 9.03 -10.37 -0.09 -19.55 16 12 C -0.10 -2.42 4.48 -26.51 -0.12 -2.54 16 13 C -0.11 -2.19 5.83 -26.50 -0.15 -2.34 16 14 C -0.04 -0.67 6.28 -27.59 -0.17 -0.84 16 15 C -0.24 -4.65 5.89 -104.98 -0.62 -5.27 16 16 C 0.04 0.58 11.95 -17.36 -0.21 0.37 16 17 N -0.51 -8.55 7.37 30.35 0.22 -8.33 16 18 H 0.43 5.42 8.96 -182.44 -1.64 3.78 16 19 N -0.30 -6.59 10.32 33.75 0.35 -6.24 16 20 C 0.13 3.04 5.59 -82.34 -0.46 2.58 16 21 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 22 H 0.10 2.65 6.34 -51.93 -0.33 2.32 16 23 H -0.03 -0.68 8.14 -51.93 -0.42 -1.10 16 24 H 0.31 6.40 9.08 -39.29 -0.36 6.04 16 25 H 0.34 7.79 6.38 -39.29 -0.25 7.54 16 26 H 0.02 0.45 8.08 -51.92 -0.42 0.03 16 27 H 0.10 2.62 5.88 -51.93 -0.31 2.32 16 28 H 0.07 1.63 7.28 -51.93 -0.38 1.25 16 29 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.16 1.89 8.06 -52.49 -0.42 1.47 16 LS Contribution 253.24 15.07 3.82 3.82 Total: -1.00 -30.00 253.24 -7.65 -37.65 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -5.33 Total: 12.81 kcal Atomic # 6 Polarization: -11.08 SS G_CDS: -2.12 Total: -13.20 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 1.00 Total: -57.86 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -30.00 -7.65 -37.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260948197.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.557 kcal (2) G-P(sol) polarization free energy of solvation -30.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds