Wall clock time and date at job start Mon Mar 30 2020 03:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99879 * 2 1 4 4 H 1.48504 * 109.46977 * 269.99474 * 3 2 1 5 5 H 1.48493 * 109.47589 * 30.00242 * 3 2 1 6 6 H 1.48502 * 109.46772 * 150.00300 * 3 2 1 7 7 C 1.37878 * 119.99555 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99549 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00252 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.47293 * 299.99694 * 9 7 2 11 11 C 1.52997 * 109.47448 * 59.99445 * 9 7 2 12 12 C 1.53002 * 109.47514 * 180.02562 * 11 9 7 13 13 C 1.53004 * 109.47129 * 300.00206 * 12 11 9 14 14 C 1.53001 * 109.46918 * 59.99859 * 13 12 11 15 15 C 1.53004 * 109.47215 * 179.97438 * 9 7 2 16 16 H 1.09002 * 109.46660 * 59.99827 * 15 9 7 17 17 N 1.46500 * 109.46997 * 299.99635 * 15 9 7 18 18 C 1.35483 * 126.98126 * 299.99960 * 17 15 9 19 19 N 1.30524 * 107.30982 * 179.97438 * 18 17 15 20 20 N 1.28598 * 109.66834 * 359.97438 * 19 18 17 21 21 C 1.30513 * 109.67335 * 0.02562 * 20 19 18 22 22 H 0.97001 * 120.00096 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47153 * 300.00409 * 11 9 7 24 24 H 1.09005 * 109.47151 * 60.00469 * 11 9 7 25 25 H 1.09005 * 109.47013 * 59.99738 * 12 11 9 26 26 H 1.08999 * 109.47764 * 180.02562 * 12 11 9 27 27 H 1.08993 * 109.46961 * 179.97438 * 13 12 11 28 28 H 1.08995 * 109.47023 * 300.00177 * 13 12 11 29 29 H 1.09007 * 109.47173 * 180.02562 * 14 13 12 30 30 H 1.08995 * 109.47495 * 59.99711 * 14 13 12 31 31 H 1.08004 * 126.35107 * 0.02562 * 18 17 15 32 32 H 1.08002 * 126.34620 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 1 0.6239 -2.5567 0.8903 11 6 0.3717 -2.5805 -1.2489 12 6 -0.3938 -3.9052 -1.2486 13 6 0.5999 -5.0685 -1.2477 14 6 1.4791 -4.9872 0.0018 15 6 2.2452 -3.6621 0.0005 16 1 2.8718 -3.6043 0.8905 17 7 3.0873 -3.5846 -1.1957 18 6 2.6759 -3.6225 -2.4860 19 7 3.7396 -3.5240 -3.2359 20 7 4.7851 -3.4268 -2.4934 21 6 4.4359 -3.4594 -1.2363 22 1 -0.4850 0.8400 0.0004 23 1 -0.3366 -1.7519 -1.2493 24 1 0.9986 -2.5230 -2.1388 25 1 -1.0208 -3.9623 -0.3587 26 1 -1.0199 -3.9634 -2.1389 27 1 0.0546 -6.0122 -1.2470 28 1 1.2269 -5.0114 -2.1375 29 1 2.1875 -5.8158 0.0022 30 1 0.8522 -5.0442 0.8916 31 1 1.6565 -3.7160 -2.8303 32 1 5.0988 -3.3975 -0.3860 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260966252.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:28 Heat of formation + Delta-G solvation = 79.379440 kcal Electronic energy + Delta-G solvation = -15900.097157 eV Core-core repulsion = 13476.197288 eV Total energy + Delta-G solvation = -2423.899869 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.52356 -38.24903 -33.19446 -33.08515 -29.99201 -29.74789 -29.32779 -25.09080 -23.04004 -21.82755 -21.43012 -20.53138 -19.58915 -16.66442 -15.63407 -15.53506 -14.88720 -14.82969 -14.23817 -13.68606 -13.48335 -12.97663 -12.39855 -12.11774 -11.86483 -11.60360 -11.08301 -10.89088 -10.75292 -10.70605 -10.32661 -10.14554 -9.91916 -9.77085 -9.41483 -8.98494 -8.90656 -8.60715 -8.45792 -6.17283 -4.25187 2.63215 3.22959 3.30101 3.33162 3.35881 3.60263 4.30854 5.05866 5.13469 5.15598 5.19391 5.27411 5.37161 5.68028 5.80668 5.97004 5.99798 6.06583 6.14389 6.22999 6.35862 6.45913 6.58076 6.68221 6.83956 6.92485 7.16383 7.42057 7.61892 7.74523 7.87072 8.16118 8.75635 9.41767 9.43280 10.87883 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025477 B = 0.013347 C = 0.010192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.756562 B = 2097.417867 C = 2746.468318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.520 4.520 8 H 0.054 0.946 9 C 0.046 3.954 10 H 0.048 0.952 11 C -0.133 4.133 12 C -0.125 4.125 13 C -0.138 4.138 14 C -0.125 4.125 15 C 0.136 3.864 16 H 0.092 0.908 17 N -0.432 5.432 18 C 0.153 3.847 19 N -0.323 5.323 20 N -0.316 5.316 21 C 0.142 3.858 22 H 0.262 0.738 23 H 0.100 0.900 24 H 0.049 0.951 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.081 0.919 31 H 0.223 0.777 32 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 -8.100 1.509 8.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.134 4.134 3 Si 0.719 3.281 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.558 4.558 8 H 0.072 0.928 9 C 0.027 3.973 10 H 0.066 0.934 11 C -0.171 4.171 12 C -0.162 4.162 13 C -0.175 4.175 14 C -0.163 4.163 15 C 0.033 3.967 16 H 0.110 0.890 17 N -0.120 5.120 18 C -0.134 4.134 19 N -0.165 5.165 20 N -0.157 5.157 21 C -0.147 4.147 22 H 0.072 0.928 23 H 0.118 0.882 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.099 0.901 31 H 0.239 0.761 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.569 -7.894 0.328 7.921 hybrid contribution -0.448 0.999 1.334 1.726 sum 0.120 -6.895 1.662 7.093 Atomic orbital electron populations 1.69843 1.05845 1.26786 1.49939 1.24882 0.94838 0.99133 0.94547 0.86598 0.79867 0.83320 0.78345 1.20566 1.21119 1.19887 1.21014 0.92747 0.90225 1.51777 0.92794 1.18996 0.91921 0.90474 0.95913 0.93374 1.22032 1.00099 0.96048 0.98912 1.21706 0.97613 0.95973 1.00932 1.21925 0.98384 0.98932 0.98251 1.21874 0.98727 0.96029 0.99719 1.21961 0.93036 0.97686 0.83996 0.89030 1.46353 1.07253 1.49913 1.08439 1.26691 1.01736 1.03851 0.81104 1.74140 0.95176 1.20075 1.27071 1.74047 1.22402 1.19449 0.99808 1.26186 0.83762 1.05728 0.98989 0.92768 0.88206 0.93268 0.92398 0.93192 0.92538 0.91304 0.92553 0.90060 0.76120 0.77803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.66 11.32 55.43 0.63 -23.03 16 2 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 6 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.52 -13.05 8.19 -34.44 -0.28 -13.34 16 8 H 0.05 1.39 7.67 -52.49 -0.40 0.99 16 9 C 0.05 0.98 1.92 -91.77 -0.18 0.80 16 10 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 11 C -0.13 -2.74 4.63 -26.73 -0.12 -2.87 16 12 C -0.12 -2.04 5.75 -26.73 -0.15 -2.19 16 13 C -0.14 -1.98 5.57 -26.73 -0.15 -2.13 16 14 C -0.13 -1.81 5.64 -26.70 -0.15 -1.96 16 15 C 0.14 2.38 2.83 -67.90 -0.19 2.18 16 16 H 0.09 1.50 8.09 -51.93 -0.42 1.08 16 17 N -0.43 -8.02 2.12 -112.81 -0.24 -8.26 16 18 C 0.15 2.98 8.49 -89.95 -0.76 2.21 16 19 N -0.32 -6.98 12.21 29.69 0.36 -6.61 16 20 N -0.32 -6.68 12.21 29.69 0.36 -6.32 16 21 C 0.14 2.62 12.71 -89.95 -1.14 1.48 16 22 H 0.26 6.79 8.31 -40.82 -0.34 6.45 16 23 H 0.10 2.40 6.07 -51.93 -0.32 2.08 16 24 H 0.05 1.04 4.28 -51.93 -0.22 0.82 16 25 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.07 1.03 4.28 -51.93 -0.22 0.81 16 29 H 0.06 0.74 8.14 -51.92 -0.42 0.32 16 30 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 31 H 0.22 3.92 4.06 -52.48 -0.21 3.71 16 32 H 0.21 2.95 8.06 -52.49 -0.42 2.53 16 LS Contribution 249.42 15.07 3.76 3.76 Total: -1.00 -28.69 249.42 -7.27 -35.95 By element: Atomic # 1 Polarization: 6.59 SS G_CDS: -3.89 Total: 2.70 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -3.23 Total: -14.11 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: 1.11 Total: -44.23 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -28.69 -7.27 -35.95 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966252.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.332 kcal (2) G-P(sol) polarization free energy of solvation -28.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds