Wall clock time and date at job start Mon Mar 30 2020 03:19:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00191 * 2 1 4 4 H 1.48502 * 109.47233 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47262 * 299.99841 * 3 2 1 6 6 H 1.48504 * 109.47349 * 60.00141 * 3 2 1 7 7 C 1.37875 * 119.99829 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00322 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99923 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46948 * 60.00140 * 9 7 2 11 11 C 1.53002 * 109.47060 * 300.00258 * 9 7 2 12 12 C 1.53000 * 109.46985 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47621 * 59.99844 * 12 11 9 14 14 C 1.53002 * 109.47068 * 300.00104 * 13 12 11 15 15 C 1.53001 * 109.47183 * 59.99841 * 14 13 12 16 16 H 1.08993 * 109.47331 * 180.02562 * 15 14 13 17 17 N 1.46499 * 109.47244 * 59.99986 * 15 14 13 18 18 C 1.35489 * 126.98180 * 119.69071 * 17 15 14 19 19 N 1.30527 * 107.30604 * 179.84039 * 18 17 15 20 20 N 1.28590 * 109.67227 * 0.43449 * 19 18 17 21 21 C 1.30518 * 109.67371 * 359.72506 * 20 19 18 22 22 H 0.97007 * 119.99753 * 0.02562 * 1 2 3 23 23 H 1.08993 * 109.47183 * 59.99996 * 11 9 7 24 24 H 1.09000 * 109.47144 * 299.99762 * 11 9 7 25 25 H 1.09001 * 109.47589 * 180.02562 * 12 11 9 26 26 H 1.09004 * 109.47254 * 299.99771 * 12 11 9 27 27 H 1.09000 * 109.47155 * 60.00119 * 13 12 11 28 28 H 1.09004 * 109.47236 * 180.02562 * 13 12 11 29 29 H 1.09000 * 109.47144 * 300.00022 * 14 13 12 30 30 H 1.08993 * 109.47183 * 179.97438 * 14 13 12 31 31 H 1.08001 * 126.34405 * 359.97438 * 18 17 15 32 32 H 1.08007 * 126.34602 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6239 -2.5566 -0.8903 11 6 0.3717 -2.5804 1.2490 12 6 -0.3928 -3.9057 1.2493 13 6 0.6017 -5.0683 1.2490 14 6 1.4809 -4.9871 -0.0005 15 6 2.2455 -3.6618 -0.0008 16 1 2.8715 -3.6037 -0.8912 17 7 3.0882 -3.5839 1.1950 18 6 4.4372 -3.4651 1.2352 19 7 4.7864 -3.4270 2.4923 20 7 3.7412 -3.5236 3.2350 21 6 2.6771 -3.6220 2.4856 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3365 -1.7519 1.2494 24 1 0.9987 -2.5229 2.1388 25 1 -1.0196 -3.9634 2.1393 26 1 -1.0198 -3.9636 0.3595 27 1 1.2286 -5.0104 2.1388 28 1 0.0569 -6.0125 1.2488 29 1 0.8539 -5.0450 -0.8903 30 1 2.1896 -5.8151 -0.0005 31 1 5.1005 -3.4099 0.3846 32 1 1.6579 -3.7159 2.8303 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966255.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:30 Heat of formation + Delta-G solvation = 64.918442 kcal Electronic energy + Delta-G solvation = -15901.126891 eV Core-core repulsion = 13476.599946 eV Total energy + Delta-G solvation = -2424.526945 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -44.01798 -39.69874 -35.03103 -34.53460 -31.47396 -31.38044 -30.76309 -26.88981 -24.48795 -23.27193 -22.96021 -22.01525 -21.01688 -18.52727 -17.19346 -16.97467 -16.57229 -16.33762 -15.82070 -15.07910 -14.76302 -14.57974 -14.10328 -13.61841 -13.36584 -12.98327 -12.86888 -12.64966 -12.35167 -12.14585 -11.99927 -11.83339 -11.42481 -11.26687 -10.92877 -10.59365 -10.56597 -10.33618 -10.10252 -8.15405 -6.26606 1.16749 1.31442 1.37579 1.44665 1.93304 2.07175 2.36708 3.14075 3.73742 3.81417 3.93804 3.97249 4.11086 4.37888 4.49516 4.57881 4.60449 4.75260 4.88996 4.91656 5.06650 5.16216 5.18873 5.26712 5.38563 5.43514 5.58838 5.63738 5.85136 6.07359 6.23271 6.33747 6.81854 7.41511 7.91399 8.87674 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.025482 B = 0.013344 C = 0.010192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.555314 B = 2097.834695 C = 2746.649535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.024 3.976 3 Si 0.935 3.065 4 H -0.276 1.276 5 H -0.277 1.277 6 H -0.289 1.289 7 C -0.523 4.523 8 H 0.044 0.956 9 C 0.044 3.956 10 H 0.031 0.969 11 C -0.128 4.128 12 C -0.116 4.116 13 C -0.132 4.132 14 C -0.119 4.119 15 C 0.139 3.861 16 H 0.105 0.895 17 N -0.434 5.434 18 C 0.148 3.852 19 N -0.348 5.348 20 N -0.355 5.355 21 C 0.155 3.845 22 H 0.260 0.740 23 H 0.061 0.939 24 H 0.040 0.960 25 H 0.062 0.938 26 H 0.058 0.942 27 H 0.064 0.936 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.241 0.759 32 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.080 -9.653 -2.178 9.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.175 4.175 3 Si 0.763 3.237 4 H -0.201 1.201 5 H -0.203 1.203 6 H -0.216 1.216 7 C -0.562 4.562 8 H 0.063 0.937 9 C 0.025 3.975 10 H 0.049 0.951 11 C -0.166 4.166 12 C -0.154 4.154 13 C -0.170 4.170 14 C -0.157 4.157 15 C 0.037 3.963 16 H 0.123 0.877 17 N -0.121 5.121 18 C -0.141 4.141 19 N -0.189 5.189 20 N -0.195 5.195 21 C -0.133 4.133 22 H 0.069 0.931 23 H 0.079 0.921 24 H 0.058 0.942 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.104 0.896 29 H 0.114 0.886 30 H 0.096 0.904 31 H 0.257 0.743 32 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 0.788 -9.444 -0.994 9.528 hybrid contribution -0.519 1.505 -1.152 1.965 sum 0.269 -7.939 -2.146 8.228 Atomic orbital electron populations 1.69960 1.06561 1.26855 1.51242 1.25454 0.95465 1.01461 0.95153 0.85857 0.79090 0.81374 0.77425 1.20086 1.20258 1.21592 1.21386 0.92530 0.91992 1.50254 0.93744 1.18903 0.92495 0.90667 0.95424 0.95118 1.21841 0.99342 0.97323 0.98062 1.21592 0.97796 0.94355 1.01642 1.21886 0.97908 0.99135 0.98021 1.21869 0.98987 0.94538 1.00327 1.21935 0.92510 0.97779 0.84067 0.87653 1.46464 1.07419 1.49804 1.08399 1.26899 0.84161 1.03744 0.99280 1.73984 1.22843 1.21015 1.01029 1.74069 0.95924 1.21397 1.28151 1.26949 1.01848 1.03106 0.81420 0.93081 0.92066 0.94175 0.91891 0.92368 0.91814 0.89555 0.88644 0.90372 0.74262 0.74950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.10 11.32 21.45 0.24 -48.85 16 2 C 0.02 1.27 5.30 84.65 0.45 1.72 16 3 Si 0.93 43.18 29.54 68.60 2.03 45.21 16 4 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 5 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 7 C -0.52 -26.16 8.19 25.60 0.21 -25.95 16 8 H 0.04 2.27 7.66 -2.91 -0.02 2.24 16 9 C 0.04 1.84 1.92 -11.54 -0.02 1.82 16 10 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 11 C -0.13 -5.20 4.63 30.60 0.14 -5.06 16 12 C -0.12 -3.55 5.74 30.59 0.18 -3.38 16 13 C -0.13 -3.33 5.57 30.59 0.17 -3.16 16 14 C -0.12 -2.98 5.63 30.60 0.17 -2.81 16 15 C 0.14 4.52 2.83 44.99 0.13 4.65 16 16 H 0.11 3.13 8.09 -2.39 -0.02 3.11 16 17 N -0.43 -15.21 2.12 -510.91 -1.08 -16.30 16 18 C 0.15 5.17 12.71 180.11 2.29 7.46 16 19 N -0.35 -14.38 12.21 -59.99 -0.73 -15.11 16 20 N -0.35 -15.06 12.21 -59.98 -0.73 -15.79 16 21 C 0.15 5.81 8.49 180.11 1.53 7.34 16 22 H 0.26 13.62 8.31 -92.70 -0.77 12.85 16 23 H 0.06 2.98 6.07 -2.39 -0.01 2.97 16 24 H 0.04 1.68 4.28 -2.39 -0.01 1.67 16 25 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.06 1.70 4.28 -2.39 -0.01 1.69 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.24 6.19 8.06 -2.91 -0.02 6.17 16 32 H 0.23 7.95 4.06 -2.91 -0.01 7.94 16 Total: -1.00 -61.84 249.41 6.09 -55.75 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 1.12 Total: 12.45 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 5.24 Total: -17.36 kcal Atomic # 7 Polarization: -93.75 SS G_CDS: -2.30 Total: -96.05 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Total: -61.84 6.09 -55.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966255.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.673 kcal (2) G-P(sol) polarization free energy of solvation -61.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds