Wall clock time and date at job start Mon Mar 30 2020 03:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86797 * 119.99787 * 2 1 4 4 H 1.48493 * 109.47479 * 269.99988 * 3 2 1 5 5 H 1.48502 * 109.47204 * 30.00503 * 3 2 1 6 6 H 1.48497 * 109.46999 * 149.99991 * 3 2 1 7 7 C 1.37875 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00038 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99907 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47730 * 59.99965 * 9 7 2 11 11 C 1.52996 * 109.47240 * 299.99506 * 9 7 2 12 12 C 1.52997 * 109.47165 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.47592 * 60.00300 * 12 11 9 14 14 C 1.53006 * 109.46626 * 300.00035 * 13 12 11 15 15 C 1.52997 * 109.47164 * 59.99702 * 14 13 12 16 16 H 1.09000 * 109.47140 * 60.00051 * 15 14 13 17 17 N 1.46496 * 109.47079 * 179.97438 * 15 14 13 18 18 C 1.35499 * 126.97992 * 59.69197 * 17 15 14 19 19 N 1.30514 * 107.30984 * 179.83624 * 18 17 15 20 20 N 1.28598 * 109.67488 * 0.43557 * 19 18 17 21 21 C 1.30523 * 109.66755 * 359.72414 * 20 19 18 22 22 H 0.96997 * 119.99907 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47054 * 300.00339 * 11 9 7 24 24 H 1.09001 * 109.46997 * 60.00072 * 11 9 7 25 25 H 1.09000 * 109.47140 * 299.99954 * 12 11 9 26 26 H 1.09002 * 109.47045 * 180.02562 * 12 11 9 27 27 H 1.08993 * 109.47839 * 180.02562 * 13 12 11 28 28 H 1.09000 * 109.47160 * 59.99666 * 13 12 11 29 29 H 1.09001 * 109.46998 * 179.97438 * 14 13 12 30 30 H 1.09000 * 109.47050 * 299.99699 * 14 13 12 31 31 H 1.08004 * 126.34040 * 359.96985 * 18 17 15 32 32 H 1.08001 * 126.34448 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6248 -2.5563 -0.8919 11 6 0.3711 -2.5810 1.2472 12 6 -0.3934 -3.9063 1.2463 13 6 0.6011 -5.0689 1.2462 14 6 1.4812 -4.9870 -0.0028 15 6 2.2457 -3.6617 -0.0019 16 1 2.8720 -3.6042 0.8883 17 7 3.0888 -3.5836 -1.1974 18 6 2.6788 -3.6271 -2.4882 19 7 3.7425 -3.5226 -3.2372 20 7 4.7876 -3.4262 -2.4941 21 6 4.4374 -3.4589 -1.2371 22 1 -0.4850 0.8400 0.0004 23 1 0.9975 -2.5239 2.1374 24 1 -0.3372 -1.7525 1.2475 25 1 -1.0198 -3.9638 0.3561 26 1 -1.0207 -3.9645 2.1358 27 1 0.0565 -6.0131 1.2451 28 1 1.2275 -5.0114 2.1364 29 1 2.1901 -5.8150 -0.0027 30 1 0.8548 -5.0445 -0.8930 31 1 1.6603 -3.7273 -2.8331 32 1 5.0998 -3.3974 -0.3863 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260966257.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:33 Heat of formation + Delta-G solvation = 43.623996 kcal Electronic energy + Delta-G solvation = -15550.009435 eV Core-core repulsion = 13124.559093 eV Total energy + Delta-G solvation = -2425.450342 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -43.87669 -39.52608 -35.11289 -34.88386 -31.38513 -31.35404 -30.39202 -26.86988 -24.43412 -23.11926 -22.99787 -22.18818 -20.26477 -18.55673 -18.18762 -16.85795 -16.46359 -15.92897 -15.52693 -15.19537 -14.88065 -14.71627 -14.13111 -13.80933 -13.46671 -12.99025 -12.62966 -12.55401 -12.40610 -12.05510 -11.91089 -11.82299 -11.40772 -11.33137 -11.26808 -10.72747 -10.57775 -10.30693 -10.21671 -8.15230 -6.27022 1.14399 1.32651 1.37662 1.43217 1.89615 2.05565 2.36549 3.13918 3.69696 3.85204 3.91220 3.99296 4.26030 4.30337 4.50966 4.55243 4.64130 4.76872 4.89728 4.91934 4.98812 5.17580 5.27098 5.31440 5.41212 5.48005 5.54671 5.62066 5.88939 6.05166 6.25611 6.30854 6.81431 7.41162 7.88399 8.87551 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.019879 B = 0.014369 C = 0.009203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.163789 B = 1948.158955 C = 3041.847295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.290 1.290 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.524 4.524 8 H 0.044 0.956 9 C 0.050 3.950 10 H 0.006 0.994 11 C -0.104 4.104 12 C -0.118 4.118 13 C -0.102 4.102 14 C -0.118 4.118 15 C 0.144 3.856 16 H 0.103 0.897 17 N -0.441 5.441 18 C 0.162 3.838 19 N -0.349 5.349 20 N -0.349 5.349 21 C 0.152 3.848 22 H 0.260 0.740 23 H 0.038 0.962 24 H 0.061 0.939 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.086 0.914 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.065 0.935 31 H 0.223 0.777 32 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.221 -9.653 4.864 10.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.175 4.175 3 Si 0.762 3.238 4 H -0.217 1.217 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.563 4.563 8 H 0.062 0.938 9 C 0.031 3.969 10 H 0.024 0.976 11 C -0.142 4.142 12 C -0.156 4.156 13 C -0.140 4.140 14 C -0.156 4.156 15 C 0.041 3.959 16 H 0.121 0.879 17 N -0.127 5.127 18 C -0.128 4.128 19 N -0.189 5.189 20 N -0.189 5.189 21 C -0.137 4.137 22 H 0.069 0.931 23 H 0.056 0.944 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.090 0.910 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.239 0.761 32 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 0.932 -9.441 3.666 10.170 hybrid contribution -0.526 1.502 0.911 1.834 sum 0.406 -7.939 4.577 9.173 Atomic orbital electron populations 1.69957 1.06593 1.26956 1.51152 1.25459 0.95461 1.01475 0.95100 0.85919 0.79227 0.81118 0.77568 1.21696 1.20608 1.19422 1.21349 0.92490 0.92005 1.50415 0.93780 1.18889 0.92251 0.90594 0.95196 0.97633 1.21433 0.98787 0.97180 0.96836 1.21602 0.97957 0.94882 1.01139 1.21436 0.97173 0.98636 0.96784 1.21883 0.98898 0.94585 1.00268 1.21934 0.92352 0.97703 0.83876 0.87906 1.46594 1.07700 1.49839 1.08587 1.26460 1.01892 1.03302 0.81126 1.74030 0.95864 1.20985 1.28042 1.74009 1.22750 1.21127 1.01006 1.26888 0.84096 1.03472 0.99266 0.93051 0.94351 0.92021 0.93342 0.91706 0.89567 0.91003 0.90378 0.91671 0.76051 0.74259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.30 11.32 21.45 0.24 -49.06 16 2 C 0.02 1.30 5.30 84.65 0.45 1.75 16 3 Si 0.93 43.16 29.54 68.60 2.03 45.18 16 4 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 7 C -0.52 -26.28 8.19 25.60 0.21 -26.07 16 8 H 0.04 2.25 7.66 -2.91 -0.02 2.22 16 9 C 0.05 2.10 1.56 -11.54 -0.02 2.08 16 10 H 0.01 0.27 7.98 -2.39 -0.02 0.25 16 11 C -0.10 -4.10 4.98 30.59 0.15 -3.95 16 12 C -0.12 -3.53 5.92 30.59 0.18 -3.35 16 13 C -0.10 -2.37 5.92 30.60 0.18 -2.19 16 14 C -0.12 -3.01 5.26 30.60 0.16 -2.85 16 15 C 0.14 4.69 2.27 44.99 0.10 4.80 16 16 H 0.10 3.16 8.09 -2.39 -0.02 3.14 16 17 N -0.44 -15.54 2.12 -510.92 -1.08 -16.62 16 18 C 0.16 6.05 11.81 180.11 2.13 8.18 16 19 N -0.35 -14.74 12.21 -59.99 -0.73 -15.47 16 20 N -0.35 -14.35 12.21 -59.99 -0.73 -15.08 16 21 C 0.15 5.29 12.71 180.11 2.29 7.58 16 22 H 0.26 13.71 8.31 -92.71 -0.77 12.94 16 23 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.06 2.93 6.07 -2.39 -0.01 2.92 16 25 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 26 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.70 7.97 -2.39 -0.02 1.68 16 31 H 0.22 7.14 8.06 -2.91 -0.02 7.12 16 32 H 0.24 6.20 8.06 -2.91 -0.02 6.17 16 Total: -1.00 -62.30 263.70 6.65 -55.65 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: 1.09 Total: 9.42 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: 5.84 Total: -14.02 kcal Atomic # 7 Polarization: -93.92 SS G_CDS: -2.30 Total: -96.23 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -62.30 6.65 -55.65 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966257.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.276 kcal (2) G-P(sol) polarization free energy of solvation -62.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds