Wall clock time and date at job start Mon Mar 30 2020 03:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99928 * 2 1 4 4 H 1.48501 * 109.47055 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47483 * 300.00499 * 3 2 1 6 6 H 1.48500 * 109.47125 * 60.00648 * 3 2 1 7 7 C 1.37884 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00052 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99746 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47390 * 300.00241 * 9 7 2 11 11 C 1.52997 * 109.47242 * 60.00271 * 9 7 2 12 12 C 1.53006 * 109.47127 * 180.02562 * 11 9 7 13 13 C 1.52999 * 109.46626 * 299.99539 * 12 11 9 14 14 C 1.52997 * 109.46991 * 60.00378 * 13 12 11 15 15 C 1.52996 * 109.47131 * 299.99311 * 14 13 12 16 16 H 1.08996 * 109.47452 * 300.00000 * 15 14 13 17 17 N 1.46507 * 109.47258 * 179.97438 * 15 14 13 18 18 C 1.35494 * 126.98182 * 299.69211 * 17 15 14 19 19 N 1.30516 * 107.30734 * 179.83425 * 18 17 15 20 20 N 1.28601 * 109.67059 * 0.43734 * 19 18 17 21 21 C 1.30517 * 109.67438 * 359.71929 * 20 19 18 22 22 H 0.96996 * 119.99725 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.47502 * 60.00161 * 11 9 7 24 24 H 1.09001 * 109.47289 * 299.99957 * 11 9 7 25 25 H 1.08993 * 109.46955 * 60.00011 * 12 11 9 26 26 H 1.09000 * 109.47050 * 179.97438 * 12 11 9 27 27 H 1.09002 * 109.46719 * 180.02562 * 13 12 11 28 28 H 1.08993 * 109.47839 * 299.99931 * 13 12 11 29 29 H 1.09001 * 109.47289 * 179.97438 * 14 13 12 30 30 H 1.09000 * 109.47611 * 59.99933 * 14 13 12 31 31 H 1.08004 * 126.34478 * 359.97438 * 18 17 15 32 32 H 1.07997 * 126.34734 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3964 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2495 12 6 -0.3946 -3.9047 -1.2491 13 6 0.5993 -5.0679 -1.2495 14 6 1.4793 -4.9871 -0.0005 15 6 2.2448 -3.6625 -0.0009 16 1 2.8712 -3.6050 -0.8910 17 7 3.0871 -3.5848 1.1953 18 6 2.6751 -3.6164 2.4857 19 7 3.7394 -3.5245 3.2355 20 7 4.7850 -3.4287 2.4930 21 6 4.4357 -3.4611 1.2359 22 1 -0.4849 0.8400 0.0004 23 1 0.9973 -2.5221 -2.1397 24 1 -0.3373 -1.7514 -1.2491 25 1 -1.0209 -3.9621 -0.3590 26 1 -1.0219 -3.9620 -2.1387 27 1 0.0539 -6.0117 -1.2497 28 1 1.2256 -5.0105 -2.1396 29 1 2.1871 -5.8161 -0.0005 30 1 0.8530 -5.0447 0.8897 31 1 1.6551 -3.7038 2.8300 32 1 5.0987 -3.4001 0.3855 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260966260.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:19:36 Heat of formation + Delta-G solvation = 57.019886 kcal Electronic energy + Delta-G solvation = -15550.663164 eV Core-core repulsion = 13125.793712 eV Total energy + Delta-G solvation = -2424.869452 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.38078 -38.09303 -33.61365 -33.11420 -29.87674 -29.75356 -28.97501 -25.08684 -22.99379 -21.62636 -21.49483 -20.77248 -18.84879 -16.94272 -16.45660 -15.24280 -14.76404 -14.39446 -14.08754 -13.86770 -13.46137 -13.30894 -12.46669 -12.38419 -11.91706 -11.19016 -11.04920 -10.82878 -10.79683 -10.66565 -10.42449 -10.11433 -9.99368 -9.82554 -9.74403 -9.04411 -8.90600 -8.68450 -8.48843 -6.17455 -4.25260 2.60599 3.20995 3.30469 3.31168 3.35091 3.58443 4.30721 5.00200 5.15328 5.17923 5.20200 5.23769 5.50514 5.56792 5.81199 5.96811 6.00857 6.04812 6.07932 6.25051 6.36024 6.45063 6.59059 6.68286 6.82696 6.96446 7.07358 7.48379 7.56348 7.72707 7.87944 8.15045 8.75871 9.39817 9.41944 10.87755 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.014375 C = 0.009206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.280485 B = 1947.294694 C = 3040.816497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.068 3.932 3 Si 0.890 3.110 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.048 3.952 10 H 0.034 0.966 11 C -0.109 4.109 12 C -0.124 4.124 13 C -0.110 4.110 14 C -0.125 4.125 15 C 0.138 3.862 16 H 0.091 0.909 17 N -0.438 5.438 18 C 0.165 3.835 19 N -0.318 5.318 20 N -0.316 5.316 21 C 0.145 3.855 22 H 0.262 0.738 23 H 0.038 0.962 24 H 0.100 0.900 25 H 0.055 0.945 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.205 0.795 32 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.087 -8.108 -3.697 8.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.134 4.134 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.556 4.556 8 H 0.072 0.928 9 C 0.029 3.971 10 H 0.052 0.948 11 C -0.147 4.147 12 C -0.162 4.162 13 C -0.148 4.148 14 C -0.163 4.163 15 C 0.035 3.965 16 H 0.110 0.890 17 N -0.125 5.125 18 C -0.124 4.124 19 N -0.159 5.159 20 N -0.157 5.157 21 C -0.143 4.143 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.118 0.882 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.085 0.915 31 H 0.222 0.778 32 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.620 -7.910 -2.492 8.316 hybrid contribution -0.445 1.008 -1.284 1.692 sum 0.176 -6.902 -3.776 7.869 Atomic orbital electron populations 1.69849 1.05849 1.26686 1.50041 1.24883 0.94831 0.99137 0.94551 0.86551 0.80287 0.83689 0.77681 1.19754 1.20907 1.20886 1.21046 0.92755 0.90212 1.51635 0.92778 1.19015 0.91840 0.90428 0.95853 0.94790 1.21621 0.99496 0.95920 0.97690 1.21696 0.97632 0.96187 1.00688 1.21456 0.97734 0.98714 0.96893 1.21899 0.98697 0.96036 0.99687 1.21982 0.93007 0.97630 0.83896 0.89042 1.46466 1.07434 1.49992 1.08582 1.26074 1.01457 1.04052 0.80816 1.74100 0.95089 1.19766 1.26981 1.74071 1.22323 1.19529 0.99804 1.26180 0.83741 1.05415 0.98975 0.92814 0.94294 0.88227 0.92619 0.93250 0.92519 0.92213 0.92566 0.91534 0.77799 0.77784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.68 11.32 55.43 0.63 -23.05 16 2 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 3 Si 0.89 20.95 29.54 -169.99 -5.02 15.93 16 4 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -13.03 8.19 -34.44 -0.28 -13.31 16 8 H 0.05 1.40 7.67 -52.49 -0.40 1.00 16 9 C 0.05 1.02 1.55 -91.77 -0.14 0.88 16 10 H 0.03 0.81 7.97 -51.93 -0.41 0.39 16 11 C -0.11 -2.19 4.98 -26.73 -0.13 -2.33 16 12 C -0.12 -2.00 5.92 -26.73 -0.16 -2.16 16 13 C -0.11 -1.50 5.92 -26.73 -0.16 -1.66 16 14 C -0.12 -1.81 5.27 -26.73 -0.14 -1.96 16 15 C 0.14 2.41 2.27 -67.93 -0.15 2.25 16 16 H 0.09 1.55 8.09 -51.93 -0.42 1.13 16 17 N -0.44 -8.12 2.12 -112.84 -0.24 -8.36 16 18 C 0.16 3.16 11.81 -89.95 -1.06 2.10 16 19 N -0.32 -6.80 12.21 29.69 0.36 -6.44 16 20 N -0.32 -6.66 12.21 29.69 0.36 -6.30 16 21 C 0.15 2.68 12.71 -89.95 -1.14 1.54 16 22 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 23 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 24 H 0.10 2.34 6.07 -51.93 -0.32 2.03 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.07 0.97 7.98 -51.93 -0.41 0.56 16 31 H 0.21 3.37 8.06 -52.48 -0.42 2.95 16 32 H 0.21 2.96 8.06 -52.49 -0.42 2.54 16 LS Contribution 263.69 15.07 3.97 3.97 Total: -1.00 -28.82 263.69 -7.89 -36.70 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -4.48 Total: 0.49 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -3.47 Total: -12.96 kcal Atomic # 7 Polarization: -45.25 SS G_CDS: 1.11 Total: -44.14 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.82 -7.89 -36.70 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260966260.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.724 kcal (2) G-P(sol) polarization free energy of solvation -28.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds