Wall clock time and date at job start Mon Mar 30 2020 03:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99971 * 2 1 4 4 H 1.48495 * 109.47264 * 264.77868 * 3 2 1 5 5 H 1.48500 * 109.46829 * 24.78061 * 3 2 1 6 6 H 1.48502 * 109.47016 * 144.77968 * 3 2 1 7 7 C 1.37879 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99764 * 5.98063 * 7 2 1 9 9 C 1.50703 * 120.00349 * 185.97763 * 7 2 1 10 10 H 1.08997 * 109.46744 * 335.15963 * 9 7 2 11 11 C 1.52999 * 109.46956 * 95.15487 * 9 7 2 12 12 C 1.52997 * 109.47303 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.46887 * 300.00107 * 12 11 9 14 14 C 1.52999 * 109.47237 * 59.99852 * 13 12 11 15 15 H 1.09000 * 109.46990 * 60.00377 * 14 13 12 16 16 N 1.46500 * 109.47274 * 180.02562 * 14 13 12 17 17 N 1.28598 * 124.61924 * 59.69194 * 16 14 13 18 18 C 1.31387 * 108.71757 * 179.83216 * 17 16 14 19 19 C 1.39677 * 105.89982 * 0.41942 * 18 17 16 20 20 N 1.28599 * 124.62210 * 240.00629 * 16 14 13 21 21 C 1.52997 * 109.47303 * 299.99893 * 14 13 12 22 22 H 0.96997 * 120.00095 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46990 * 59.99862 * 11 9 7 24 24 H 1.09001 * 109.47276 * 300.00634 * 11 9 7 25 25 H 1.09001 * 109.47327 * 179.97438 * 12 11 9 26 26 H 1.09000 * 109.47493 * 59.99824 * 12 11 9 27 27 H 1.09004 * 109.47091 * 179.97438 * 13 12 11 28 28 H 1.08997 * 109.47447 * 299.99726 * 13 12 11 29 29 H 1.07997 * 127.04717 * 180.16531 * 18 17 16 30 30 H 1.07994 * 127.04536 * 179.76392 * 19 18 17 31 31 H 1.09004 * 109.47225 * 300.00613 * 21 14 13 32 32 H 1.09001 * 109.47327 * 180.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6070 1.9828 -1.3942 5 1 1.3957 2.6820 0.5868 6 1 3.4872 1.4746 0.8075 7 6 2.0046 -1.1940 -0.0005 8 1 1.4690 -2.1268 -0.0984 9 6 3.5054 -1.1977 0.1354 10 1 3.9040 -0.2446 -0.2122 11 6 3.8841 -1.4038 1.6034 12 6 5.4078 -1.4068 1.7415 13 6 5.9939 -2.5418 0.8995 14 6 5.6153 -2.3357 -0.5685 15 1 6.0136 -1.3825 -0.9161 16 7 6.1759 -3.4229 -1.3748 17 7 5.9062 -4.6693 -1.2092 18 6 6.5739 -5.3671 -2.1000 19 6 7.3047 -4.4382 -2.8443 20 7 7.0094 -3.2613 -2.3407 21 6 4.0915 -2.3327 -0.7067 22 1 -0.4850 0.8400 0.0004 23 1 3.4854 -2.3568 1.9510 24 1 3.4668 -0.5950 2.2033 25 1 5.6775 -1.5532 2.7875 26 1 5.8061 -0.4536 1.3940 27 1 7.0795 -2.5438 0.9975 28 1 5.5957 -3.4951 1.2470 29 1 6.5633 -6.4395 -2.2276 30 1 7.9748 -4.6451 -3.6655 31 1 3.6932 -3.2859 -0.3591 32 1 3.8218 -2.1863 -1.7526 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260978803.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:12 Heat of formation + Delta-G solvation = 87.488461 kcal Electronic energy + Delta-G solvation = -15165.536635 eV Core-core repulsion = 12741.988399 eV Total energy + Delta-G solvation = -2423.548236 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -43.28710 -38.11474 -33.46423 -32.30862 -32.14258 -30.42657 -28.94263 -24.99357 -23.46654 -22.59923 -21.40879 -20.37099 -18.99650 -17.39725 -16.53069 -16.03204 -15.00519 -14.82666 -14.08664 -14.00400 -13.66668 -13.30507 -12.58295 -12.18156 -12.10671 -11.44495 -11.20897 -11.10367 -10.86381 -10.78935 -10.47410 -10.33687 -10.07999 -9.93656 -9.65912 -9.56391 -9.18232 -8.82323 -8.56565 -6.12772 -4.12566 2.13831 2.62192 2.68859 3.24971 3.33634 3.33932 4.36990 4.41296 4.96002 5.04688 5.17014 5.23657 5.31055 5.48029 5.60981 5.72386 5.85500 6.01129 6.12797 6.21950 6.25818 6.30596 6.37006 6.47617 6.64297 6.76290 6.89822 7.07022 7.23731 7.38046 7.69405 8.46442 8.63961 8.92679 9.49552 11.00456 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039617 B = 0.007955 C = 0.007564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.598422 B = 3519.154918 C = 3701.062774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.072 3.928 3 Si 0.875 3.125 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.074 0.926 9 C 0.022 3.978 10 H 0.033 0.967 11 C -0.115 4.115 12 C -0.119 4.119 13 C -0.118 4.118 14 C 0.161 3.839 15 H 0.109 0.891 16 N -0.137 5.137 17 N -0.280 5.280 18 C -0.044 4.044 19 C -0.042 4.042 20 N -0.296 5.296 21 C -0.107 4.107 22 H 0.264 0.736 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.061 0.939 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.078 0.922 29 H 0.192 0.808 30 H 0.191 0.809 31 H 0.071 0.929 32 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.654 -5.608 -1.012 14.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.130 4.130 3 Si 0.702 3.298 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.187 1.187 7 C -0.550 4.550 8 H 0.092 0.908 9 C 0.003 3.997 10 H 0.051 0.949 11 C -0.153 4.153 12 C -0.157 4.157 13 C -0.157 4.157 14 C 0.062 3.938 15 H 0.127 0.873 16 N -0.040 5.040 17 N -0.121 5.121 18 C -0.226 4.226 19 C -0.224 4.224 20 N -0.137 5.137 21 C -0.146 4.146 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.080 0.920 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.096 0.904 29 H 0.209 0.791 30 H 0.208 0.792 31 H 0.090 0.910 32 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.960 -4.458 -0.260 13.708 hybrid contribution 0.793 0.101 -0.721 1.077 sum 13.753 -4.357 -0.982 14.460 Atomic orbital electron populations 1.69904 1.06336 1.27057 1.50252 1.25061 0.94693 0.98958 0.94280 0.86893 0.80309 0.83737 0.78855 1.20167 1.21521 1.18744 1.20918 0.88872 0.94744 1.50507 0.90805 1.19109 0.96867 0.93094 0.90660 0.94854 1.21908 0.91566 1.01759 1.00088 1.21624 0.98523 0.97011 0.98538 1.21836 1.00068 1.01329 0.92476 1.22133 0.97025 0.85074 0.89588 0.87328 1.48688 1.28417 1.04939 1.21927 1.74031 1.22131 0.92364 1.23614 1.24738 0.99831 1.01691 0.96298 1.24686 1.05164 0.88333 1.04199 1.74042 1.08977 1.27032 1.03669 1.22038 0.88167 1.02479 1.01877 0.92570 0.92308 0.92333 0.92023 0.92312 0.92420 0.90372 0.79142 0.79182 0.90990 0.91946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 2 C 0.07 2.02 5.47 -17.82 -0.10 1.93 16 3 Si 0.87 20.90 27.02 -169.99 -4.59 16.31 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.26 -5.88 6.78 56.52 0.38 -5.49 16 7 C -0.51 -13.92 8.86 -34.44 -0.31 -14.22 16 8 H 0.07 2.20 8.06 -52.48 -0.42 1.78 16 9 C 0.02 0.50 1.79 -91.77 -0.16 0.33 16 10 H 0.03 0.74 5.24 -51.93 -0.27 0.47 16 11 C -0.12 -2.25 5.19 -26.73 -0.14 -2.39 16 12 C -0.12 -1.87 5.92 -26.73 -0.16 -2.03 16 13 C -0.12 -1.83 5.37 -26.73 -0.14 -1.97 16 14 C 0.16 2.77 3.07 -67.93 -0.21 2.56 16 15 H 0.11 1.80 8.14 -51.93 -0.42 1.38 16 16 N -0.14 -2.38 3.70 -4.90 -0.02 -2.40 16 17 N -0.28 -4.73 11.69 30.68 0.36 -4.37 16 18 C -0.04 -0.59 12.20 -17.21 -0.21 -0.80 16 19 C -0.04 -0.56 12.20 -17.21 -0.21 -0.77 16 20 N -0.30 -4.92 12.05 30.67 0.37 -4.55 16 21 C -0.11 -2.14 4.64 -26.73 -0.12 -2.26 16 22 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 23 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 28 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 29 H 0.19 1.76 8.06 -52.49 -0.42 1.34 16 30 H 0.19 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 265.08 15.07 3.99 3.99 Total: -1.00 -30.68 265.08 -5.37 -36.05 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.50 Total: 0.82 kcal Atomic # 6 Polarization: -17.87 SS G_CDS: -1.76 Total: -19.63 kcal Atomic # 7 Polarization: -39.03 SS G_CDS: 1.48 Total: -37.55 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.59 Total: 16.31 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -30.68 -5.37 -36.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260978803.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.541 kcal (2) G-P(sol) polarization free energy of solvation -30.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds