Wall clock time and date at job start Mon Mar 30 2020 03:16:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 119.99971 * 2 1 4 4 H 1.48495 * 109.47264 * 264.77868 * 3 2 1 5 5 H 1.48500 * 109.46829 * 24.78061 * 3 2 1 6 6 H 1.48502 * 109.47016 * 144.77968 * 3 2 1 7 7 C 1.37879 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99764 * 5.98063 * 7 2 1 9 9 C 1.50703 * 120.00349 * 185.97763 * 7 2 1 10 10 H 1.08997 * 109.46744 * 335.15963 * 9 7 2 11 11 C 1.52999 * 109.46956 * 95.15487 * 9 7 2 12 12 C 1.52997 * 109.47303 * 180.02562 * 11 9 7 13 13 C 1.52997 * 109.46887 * 300.00107 * 12 11 9 14 14 C 1.52999 * 109.47237 * 59.99852 * 13 12 11 15 15 H 1.09000 * 109.46990 * 60.00377 * 14 13 12 16 16 N 1.46500 * 109.47274 * 180.02562 * 14 13 12 17 17 N 1.28598 * 124.61924 * 59.69194 * 16 14 13 18 18 C 1.31387 * 108.71757 * 179.83216 * 17 16 14 19 19 C 1.39677 * 105.89982 * 0.41942 * 18 17 16 20 20 N 1.28599 * 124.62210 * 240.00629 * 16 14 13 21 21 C 1.52997 * 109.47303 * 299.99893 * 14 13 12 22 22 H 0.96997 * 120.00095 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.46990 * 59.99862 * 11 9 7 24 24 H 1.09001 * 109.47276 * 300.00634 * 11 9 7 25 25 H 1.09001 * 109.47327 * 179.97438 * 12 11 9 26 26 H 1.09000 * 109.47493 * 59.99824 * 12 11 9 27 27 H 1.09004 * 109.47091 * 179.97438 * 13 12 11 28 28 H 1.08997 * 109.47447 * 299.99726 * 13 12 11 29 29 H 1.07997 * 127.04717 * 180.16531 * 18 17 16 30 30 H 1.07994 * 127.04536 * 179.76392 * 19 18 17 31 31 H 1.09004 * 109.47225 * 300.00613 * 21 14 13 32 32 H 1.09001 * 109.47327 * 180.02562 * 21 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6070 1.9828 -1.3942 5 1 1.3957 2.6820 0.5868 6 1 3.4872 1.4746 0.8075 7 6 2.0046 -1.1940 -0.0005 8 1 1.4690 -2.1268 -0.0984 9 6 3.5054 -1.1977 0.1354 10 1 3.9040 -0.2446 -0.2122 11 6 3.8841 -1.4038 1.6034 12 6 5.4078 -1.4068 1.7415 13 6 5.9939 -2.5418 0.8995 14 6 5.6153 -2.3357 -0.5685 15 1 6.0136 -1.3825 -0.9161 16 7 6.1759 -3.4229 -1.3748 17 7 5.9062 -4.6693 -1.2092 18 6 6.5739 -5.3671 -2.1000 19 6 7.3047 -4.4382 -2.8443 20 7 7.0094 -3.2613 -2.3407 21 6 4.0915 -2.3327 -0.7067 22 1 -0.4850 0.8400 0.0004 23 1 3.4854 -2.3568 1.9510 24 1 3.4668 -0.5950 2.2033 25 1 5.6775 -1.5532 2.7875 26 1 5.8061 -0.4536 1.3940 27 1 7.0795 -2.5438 0.9975 28 1 5.5957 -3.4951 1.2470 29 1 6.5633 -6.4395 -2.2276 30 1 7.9748 -4.6451 -3.6655 31 1 3.6932 -3.2859 -0.3591 32 1 3.8218 -2.1863 -1.7526 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260978803.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:11 Heat of formation + Delta-G solvation = 67.182818 kcal Electronic energy + Delta-G solvation = -15166.417154 eV Core-core repulsion = 12741.988399 eV Total energy + Delta-G solvation = -2424.428754 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -44.42794 -39.59868 -35.19704 -33.89666 -33.30883 -32.10708 -30.27929 -26.91033 -24.76874 -23.70911 -22.89352 -21.77494 -20.55188 -19.15717 -18.07945 -17.24815 -16.51364 -16.07292 -15.68659 -15.24638 -15.11706 -14.85904 -14.54881 -13.63216 -13.53576 -12.96392 -12.77274 -12.57467 -12.53433 -12.24600 -11.82629 -11.79924 -11.66501 -11.33943 -11.28612 -11.19596 -10.94934 -10.66436 -10.11758 -8.30018 -6.34743 0.97051 1.36257 1.36569 1.43174 1.48251 1.68074 2.34926 3.05498 3.29728 3.70667 3.81406 3.96506 4.16998 4.26352 4.31594 4.36809 4.56573 4.61961 4.68433 4.72846 4.94497 5.04557 5.08246 5.18643 5.22236 5.32987 5.44727 5.55209 5.62362 5.75383 5.87102 6.30080 6.72320 7.30860 7.50933 8.87229 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.039617 B = 0.007955 C = 0.007564 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.598422 B = 3519.154918 C = 3701.062774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.010 3.990 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.289 1.289 6 H -0.231 1.231 7 C -0.519 4.519 8 H 0.025 0.975 9 C 0.022 3.978 10 H 0.040 0.960 11 C -0.113 4.113 12 C -0.109 4.109 13 C -0.109 4.109 14 C 0.167 3.833 15 H 0.117 0.883 16 N -0.159 5.159 17 N -0.317 5.317 18 C -0.036 4.036 19 C -0.030 4.030 20 N -0.325 5.325 21 C -0.095 4.095 22 H 0.266 0.734 23 H 0.047 0.953 24 H 0.050 0.950 25 H 0.090 0.910 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.069 0.931 29 H 0.230 0.770 30 H 0.234 0.766 31 H 0.053 0.947 32 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.027 -5.405 -1.037 17.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.187 4.187 3 Si 0.763 3.237 4 H -0.195 1.195 5 H -0.215 1.215 6 H -0.154 1.154 7 C -0.557 4.557 8 H 0.043 0.957 9 C 0.002 3.998 10 H 0.058 0.942 11 C -0.151 4.151 12 C -0.147 4.147 13 C -0.148 4.148 14 C 0.068 3.932 15 H 0.135 0.865 16 N -0.060 5.060 17 N -0.158 5.158 18 C -0.218 4.218 19 C -0.212 4.212 20 N -0.165 5.165 21 C -0.134 4.134 22 H 0.075 0.925 23 H 0.066 0.934 24 H 0.069 0.931 25 H 0.108 0.892 26 H 0.091 0.909 27 H 0.098 0.902 28 H 0.087 0.913 29 H 0.247 0.753 30 H 0.250 0.750 31 H 0.072 0.928 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 16.353 -4.264 -0.271 16.902 hybrid contribution -0.293 -0.174 -0.824 0.891 sum 16.060 -4.438 -1.094 16.698 Atomic orbital electron populations 1.70069 1.08465 1.28150 1.52454 1.25997 0.95471 1.03207 0.93984 0.85834 0.79959 0.78274 0.79584 1.19493 1.21497 1.15397 1.21226 0.91830 0.92916 1.49698 0.95675 1.19071 0.93404 0.94192 0.93084 0.94177 1.21757 0.95019 1.00879 0.97431 1.21555 0.94809 0.97852 1.00475 1.21769 1.01269 1.00758 0.90969 1.21885 0.94273 0.85984 0.91076 0.86482 1.48522 1.29748 1.04854 1.22891 1.74016 1.23599 0.92715 1.25458 1.25495 0.98109 1.03407 0.94759 1.25463 1.04475 0.87106 1.04158 1.74015 1.09634 1.28841 1.04043 1.21738 0.91174 1.00621 0.99865 0.92538 0.93402 0.93132 0.89195 0.90886 0.90195 0.91265 0.75328 0.75014 0.92841 0.94148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 2 C 0.01 0.59 5.47 84.66 0.46 1.05 16 3 Si 0.94 42.91 27.02 68.60 1.85 44.77 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 6 H -0.23 -9.31 6.78 99.48 0.67 -8.63 16 7 C -0.52 -29.41 8.86 25.60 0.23 -29.18 16 8 H 0.02 1.61 8.06 -2.91 -0.02 1.59 16 9 C 0.02 0.98 1.79 -11.54 -0.02 0.96 16 10 H 0.04 1.73 5.24 -2.39 -0.01 1.71 16 11 C -0.11 -4.30 5.19 30.59 0.16 -4.15 16 12 C -0.11 -3.07 5.92 30.59 0.18 -2.89 16 13 C -0.11 -3.10 5.37 30.59 0.16 -2.94 16 14 C 0.17 5.55 3.07 44.99 0.14 5.69 16 15 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 16 N -0.16 -5.30 3.70 -169.41 -0.63 -5.93 16 17 N -0.32 -10.27 11.69 -56.86 -0.66 -10.94 16 18 C -0.04 -0.85 12.20 85.11 1.04 0.19 16 19 C -0.03 -0.69 12.20 85.11 1.04 0.35 16 20 N -0.32 -10.08 12.05 -56.87 -0.69 -10.77 16 21 C -0.09 -3.88 4.64 30.59 0.14 -3.74 16 22 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 23 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 24 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 25 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.07 2.10 8.13 -2.39 -0.02 2.09 16 29 H 0.23 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.23 3.04 8.06 -2.91 -0.02 3.01 16 31 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 32 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -69.96 265.08 4.77 -65.20 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: 1.06 Total: 11.61 kcal Atomic # 6 Polarization: -38.18 SS G_CDS: 3.53 Total: -34.65 kcal Atomic # 7 Polarization: -85.24 SS G_CDS: -1.68 Total: -86.92 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.85 Total: 44.77 kcal Total: -69.96 4.77 -65.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260978803.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.380 kcal (2) G-P(sol) polarization free energy of solvation -69.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds