Wall clock time and date at job start Mon Mar 30 2020 03:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00120 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00708 * 3 2 1 5 5 H 1.48509 * 109.47029 * 30.00274 * 3 2 1 6 6 H 1.48499 * 109.47411 * 150.00120 * 3 2 1 7 7 C 1.37882 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 11 11 C 1.52997 * 109.47265 * 60.00230 * 9 7 2 12 12 C 1.52999 * 109.47592 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.46626 * 300.00035 * 12 11 9 14 14 C 1.52997 * 109.47164 * 59.99702 * 13 12 11 15 15 H 1.09001 * 109.47230 * 179.97438 * 14 13 12 16 16 N 1.46507 * 109.47235 * 59.99744 * 14 13 12 17 17 N 1.28593 * 124.62021 * 299.70529 * 16 14 13 18 18 C 1.31376 * 108.72042 * 179.82799 * 17 16 14 19 19 C 1.39681 * 105.89994 * 0.40663 * 18 17 16 20 20 N 1.28601 * 124.61341 * 119.99505 * 16 14 13 21 21 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 22 22 H 0.97002 * 120.00082 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47140 * 59.99748 * 11 9 7 24 24 H 1.09002 * 109.47045 * 299.99841 * 11 9 7 25 25 H 1.08993 * 109.47839 * 180.02562 * 12 11 9 26 26 H 1.09000 * 109.47160 * 59.99666 * 12 11 9 27 27 H 1.09001 * 109.46998 * 179.97438 * 13 12 11 28 28 H 1.09000 * 109.47050 * 299.99699 * 13 12 11 29 29 H 1.08003 * 127.05367 * 180.15983 * 18 17 16 30 30 H 1.07997 * 127.05064 * 179.72796 * 19 18 17 31 31 H 1.08992 * 109.47534 * 60.00272 * 21 9 7 32 32 H 1.08996 * 109.47134 * 299.99466 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 6 0.3710 -2.5800 -1.2494 12 6 -0.3945 -3.9047 -1.2492 13 6 0.5994 -5.0680 -1.2495 14 6 1.4795 -4.9871 -0.0006 15 1 2.1873 -5.8161 -0.0005 16 7 0.6376 -5.0644 1.1960 17 7 -0.2927 -4.2267 1.4900 18 6 -0.8476 -4.5934 2.6230 19 6 -0.1691 -5.7459 3.0260 20 7 0.7319 -5.9762 2.0979 21 6 2.2453 -3.6620 -0.0005 22 1 -0.4850 0.8401 0.0004 23 1 0.9973 -2.5220 -2.1396 24 1 -0.3373 -1.7515 -1.2490 25 1 -1.0211 -3.9625 -2.1391 26 1 -1.0209 -3.9622 -0.3590 27 1 0.0541 -6.0118 -1.2488 28 1 1.2258 -5.0105 -2.1397 29 1 -1.6591 -4.1021 3.1392 30 1 -0.3481 -6.3280 3.9179 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260978808.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:19 Heat of formation + Delta-G solvation = 105.163980 kcal Electronic energy + Delta-G solvation = -15697.547969 eV Core-core repulsion = 13274.766201 eV Total energy + Delta-G solvation = -2422.781768 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -43.02994 -37.75427 -33.26145 -31.97087 -31.44605 -29.92910 -28.73006 -24.82261 -23.11760 -22.26182 -21.16853 -20.33832 -18.96739 -16.38658 -15.96544 -15.82582 -14.89368 -14.44288 -14.13810 -13.93735 -13.16833 -12.78702 -12.15332 -11.82698 -11.50439 -11.41372 -11.05053 -10.92936 -10.69676 -10.63544 -10.31699 -10.13157 -9.85776 -9.46176 -9.17931 -8.91797 -8.79887 -8.44704 -8.13461 -5.90157 -3.96406 2.46901 2.91818 3.03034 3.32804 3.39724 3.42634 4.47931 4.69644 5.20935 5.28742 5.38624 5.43894 5.57187 5.75116 5.91650 6.05254 6.20822 6.33515 6.47332 6.49052 6.54454 6.68430 6.76446 6.90557 7.11111 7.38025 7.41836 7.59352 7.82889 8.22354 8.29036 8.52896 8.98732 9.08598 9.66468 11.14620 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035599 B = 0.009609 C = 0.008899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.359392 B = 2913.382259 C = 3145.626090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.063 3.937 3 Si 0.886 3.114 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.515 4.515 8 H 0.050 0.950 9 C 0.039 3.961 10 H 0.063 0.937 11 C -0.102 4.102 12 C -0.131 4.131 13 C -0.123 4.123 14 C 0.166 3.834 15 H 0.099 0.901 16 N -0.136 5.136 17 N -0.236 5.236 18 C -0.057 4.057 19 C -0.043 4.043 20 N -0.309 5.309 21 C -0.121 4.121 22 H 0.258 0.742 23 H 0.026 0.974 24 H 0.092 0.908 25 H 0.041 0.959 26 H 0.081 0.919 27 H 0.052 0.948 28 H 0.082 0.918 29 H 0.188 0.812 30 H 0.187 0.813 31 H 0.053 0.947 32 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 -9.539 1.152 9.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.138 4.138 3 Si 0.714 3.286 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.554 4.554 8 H 0.069 0.931 9 C 0.020 3.980 10 H 0.081 0.919 11 C -0.140 4.140 12 C -0.169 4.169 13 C -0.161 4.161 14 C 0.066 3.934 15 H 0.117 0.883 16 N -0.039 5.039 17 N -0.077 5.077 18 C -0.238 4.238 19 C -0.225 4.225 20 N -0.150 5.150 21 C -0.160 4.160 22 H 0.068 0.932 23 H 0.045 0.955 24 H 0.111 0.889 25 H 0.059 0.941 26 H 0.099 0.901 27 H 0.071 0.929 28 H 0.100 0.900 29 H 0.205 0.795 30 H 0.204 0.796 31 H 0.072 0.928 32 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -0.207 -9.350 0.035 9.352 hybrid contribution -0.029 0.859 0.860 1.216 sum -0.236 -8.491 0.896 8.541 Atomic orbital electron populations 1.69900 1.05688 1.26044 1.50611 1.24922 0.94804 0.98738 0.95351 0.86704 0.79917 0.84018 0.77968 1.20815 1.21309 1.20134 1.21198 0.92624 0.90932 1.50625 0.93148 1.18944 0.92392 0.90050 0.96565 0.91889 1.21529 0.99388 0.95110 0.98013 1.21888 0.97805 0.95770 1.01437 1.21871 0.98833 0.99699 0.95726 1.21903 0.90497 1.01766 0.79228 0.88299 1.48447 1.23941 1.14012 1.17457 1.74438 1.01984 1.15693 1.15584 1.24884 1.04644 0.98411 0.95835 1.24584 0.96852 1.00150 1.00899 1.73940 1.23496 1.16615 1.00950 1.22091 0.99024 0.93311 1.01538 0.93200 0.95486 0.88946 0.94064 0.90071 0.92888 0.89987 0.79482 0.79564 0.92818 0.90666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.40 11.32 55.43 0.63 -24.78 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.67 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.23 8.56 -34.44 -0.29 -14.53 16 8 H 0.05 1.38 7.74 -52.49 -0.41 0.97 16 9 C 0.04 0.96 1.81 -91.78 -0.17 0.80 16 10 H 0.06 1.72 5.44 -51.93 -0.28 1.43 16 11 C -0.10 -2.41 4.98 -26.73 -0.13 -2.54 16 12 C -0.13 -2.60 5.64 -26.73 -0.15 -2.75 16 13 C -0.12 -2.06 5.64 -26.73 -0.15 -2.21 16 14 C 0.17 2.97 3.57 -67.90 -0.24 2.73 16 15 H 0.10 1.52 8.14 -51.93 -0.42 1.10 16 16 N -0.14 -2.63 3.70 -4.87 -0.02 -2.65 16 17 N -0.24 -4.83 6.06 30.68 0.19 -4.65 16 18 C -0.06 -0.96 12.20 -17.21 -0.21 -1.17 16 19 C -0.04 -0.67 12.20 -17.21 -0.21 -0.88 16 20 N -0.31 -5.61 12.05 30.68 0.37 -5.24 16 21 C -0.12 -2.49 4.86 -26.71 -0.13 -2.62 16 22 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 23 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 24 H 0.09 2.48 6.07 -51.93 -0.32 2.16 16 25 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.08 1.73 5.47 -51.93 -0.28 1.45 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.19 2.56 8.06 -52.48 -0.42 2.13 16 30 H 0.19 2.06 8.06 -52.49 -0.42 1.64 16 31 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 32 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 254.88 15.07 3.84 3.84 Total: -1.00 -30.54 254.88 -6.03 -36.57 By element: Atomic # 1 Polarization: 6.17 SS G_CDS: -4.23 Total: 1.94 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: -1.78 Total: -21.52 kcal Atomic # 7 Polarization: -38.48 SS G_CDS: 1.16 Total: -37.31 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -30.54 -6.03 -36.57 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260978808.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.731 kcal (2) G-P(sol) polarization free energy of solvation -30.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds