Wall clock time and date at job start Mon Mar 30 2020 03:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86799 * 120.00120 * 2 1 4 4 H 1.48500 * 109.47227 * 270.00708 * 3 2 1 5 5 H 1.48509 * 109.47029 * 30.00274 * 3 2 1 6 6 H 1.48499 * 109.47411 * 150.00120 * 3 2 1 7 7 C 1.37882 * 120.00258 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.47247 * 300.00044 * 9 7 2 11 11 C 1.52997 * 109.47265 * 60.00230 * 9 7 2 12 12 C 1.52999 * 109.47592 * 180.02562 * 11 9 7 13 13 C 1.53006 * 109.46626 * 300.00035 * 12 11 9 14 14 C 1.52997 * 109.47164 * 59.99702 * 13 12 11 15 15 H 1.09001 * 109.47230 * 179.97438 * 14 13 12 16 16 N 1.46507 * 109.47235 * 59.99744 * 14 13 12 17 17 N 1.28593 * 124.62021 * 299.70529 * 16 14 13 18 18 C 1.31376 * 108.72042 * 179.82799 * 17 16 14 19 19 C 1.39681 * 105.89994 * 0.40663 * 18 17 16 20 20 N 1.28601 * 124.61341 * 119.99505 * 16 14 13 21 21 C 1.52996 * 109.46861 * 180.02562 * 9 7 2 22 22 H 0.97002 * 120.00082 * 359.97438 * 1 2 3 23 23 H 1.09000 * 109.47140 * 59.99748 * 11 9 7 24 24 H 1.09002 * 109.47045 * 299.99841 * 11 9 7 25 25 H 1.08993 * 109.47839 * 180.02562 * 12 11 9 26 26 H 1.09000 * 109.47160 * 59.99666 * 12 11 9 27 27 H 1.09001 * 109.46998 * 179.97438 * 13 12 11 28 28 H 1.09000 * 109.47050 * 299.99699 * 13 12 11 29 29 H 1.08003 * 127.05367 * 180.15983 * 18 17 16 30 30 H 1.07997 * 127.05064 * 179.72796 * 19 18 17 31 31 H 1.08992 * 109.47534 * 60.00272 * 21 9 7 32 32 H 1.08996 * 109.47134 * 299.99466 * 21 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8897 11 6 0.3710 -2.5800 -1.2494 12 6 -0.3945 -3.9047 -1.2492 13 6 0.5994 -5.0680 -1.2495 14 6 1.4795 -4.9871 -0.0006 15 1 2.1873 -5.8161 -0.0005 16 7 0.6376 -5.0644 1.1960 17 7 -0.2927 -4.2267 1.4900 18 6 -0.8476 -4.5934 2.6230 19 6 -0.1691 -5.7459 3.0260 20 7 0.7319 -5.9762 2.0979 21 6 2.2453 -3.6620 -0.0005 22 1 -0.4850 0.8401 0.0004 23 1 0.9973 -2.5220 -2.1396 24 1 -0.3373 -1.7515 -1.2490 25 1 -1.0211 -3.9625 -2.1391 26 1 -1.0209 -3.9622 -0.3590 27 1 0.0541 -6.0118 -1.2488 28 1 1.2258 -5.0105 -2.1397 29 1 -1.6591 -4.1021 3.1392 30 1 -0.3481 -6.3280 3.9179 31 1 2.8720 -3.6043 0.8894 32 1 2.8719 -3.6043 -0.8905 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260978808.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:16:19 Heat of formation + Delta-G solvation = 86.560149 kcal Electronic energy + Delta-G solvation = -15698.354692 eV Core-core repulsion = 13274.766201 eV Total energy + Delta-G solvation = -2423.588490 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 221.122 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -44.36606 -39.33948 -35.14500 -33.45836 -32.90896 -31.68306 -30.25832 -26.80983 -24.58024 -23.55585 -22.82923 -21.95218 -20.52760 -18.37980 -17.39206 -17.26753 -16.65579 -16.07625 -15.47641 -15.42149 -14.65429 -14.56111 -13.98991 -13.52522 -13.04473 -12.92203 -12.84336 -12.53973 -12.47794 -12.35277 -11.87615 -11.76334 -11.70688 -11.06551 -10.88696 -10.63669 -10.49723 -10.13197 -10.00000 -8.01420 -6.14855 1.11780 1.39172 1.40177 1.49396 1.61352 1.77509 2.44607 3.24036 3.43588 3.81209 3.99534 4.03304 4.28724 4.42743 4.60993 4.65676 4.76459 4.77281 4.87973 4.98697 5.06216 5.09974 5.33843 5.38334 5.51457 5.62940 5.72178 5.75266 5.99293 6.29486 6.32624 6.47428 7.01386 7.50911 7.65871 9.01316 Molecular weight = 221.12amu Principal moments of inertia in cm(-1) A = 0.035599 B = 0.009609 C = 0.008899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 786.359392 B = 2913.382259 C = 3145.626090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.014 3.986 3 Si 0.946 3.054 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.537 4.537 8 H 0.045 0.955 9 C 0.035 3.965 10 H 0.037 0.963 11 C -0.093 4.093 12 C -0.126 4.126 13 C -0.114 4.114 14 C 0.165 3.835 15 H 0.129 0.871 16 N -0.150 5.150 17 N -0.281 5.281 18 C -0.063 4.063 19 C -0.028 4.028 20 N -0.325 5.325 21 C -0.114 4.114 22 H 0.257 0.743 23 H 0.024 0.976 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.105 0.895 29 H 0.212 0.788 30 H 0.231 0.769 31 H 0.039 0.961 32 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.420 -10.909 1.295 10.994 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.184 4.184 3 Si 0.772 3.228 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.575 4.575 8 H 0.063 0.937 9 C 0.017 3.983 10 H 0.055 0.945 11 C -0.131 4.131 12 C -0.163 4.163 13 C -0.152 4.152 14 C 0.066 3.934 15 H 0.147 0.853 16 N -0.053 5.053 17 N -0.122 5.122 18 C -0.245 4.245 19 C -0.210 4.210 20 N -0.165 5.165 21 C -0.152 4.152 22 H 0.066 0.934 23 H 0.043 0.957 24 H 0.071 0.929 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.091 0.909 28 H 0.123 0.877 29 H 0.229 0.771 30 H 0.248 0.752 31 H 0.058 0.942 32 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.247 -10.727 0.165 10.731 hybrid contribution -0.209 1.284 0.907 1.586 sum 0.038 -9.444 1.073 9.504 Atomic orbital electron populations 1.70056 1.06911 1.26571 1.51351 1.25653 0.95600 1.01915 0.95257 0.85756 0.78703 0.80186 0.78162 1.20078 1.21128 1.19757 1.21637 0.92692 0.92782 1.50389 0.93659 1.18859 0.92921 0.90580 0.95970 0.94470 1.21301 0.98550 0.96001 0.97289 1.21749 0.98196 0.95027 1.01362 1.21834 0.98316 0.98923 0.96147 1.21954 0.90993 1.00847 0.79639 0.85289 1.48523 1.24274 1.14354 1.18118 1.74390 1.03256 1.17089 1.17483 1.25452 1.04987 0.98930 0.95098 1.25302 0.95030 0.99440 1.01229 1.73919 1.24417 1.16755 1.01459 1.21910 0.98256 0.93594 1.01451 0.93383 0.95678 0.92900 0.92688 0.91644 0.90870 0.87692 0.77109 0.75219 0.94244 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.70 11.32 21.45 0.24 -53.46 16 2 C 0.01 0.82 5.30 84.66 0.45 1.27 16 3 Si 0.95 44.64 29.54 68.60 2.03 46.67 16 4 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 6 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 7 C -0.54 -30.18 8.56 25.60 0.22 -29.96 16 8 H 0.05 2.51 7.74 -2.91 -0.02 2.49 16 9 C 0.04 1.77 1.81 -11.54 -0.02 1.75 16 10 H 0.04 2.09 5.44 -2.39 -0.01 2.08 16 11 C -0.09 -4.45 4.98 30.59 0.15 -4.30 16 12 C -0.13 -4.89 5.64 30.60 0.17 -4.72 16 13 C -0.11 -3.54 5.64 30.60 0.17 -3.37 16 14 C 0.17 5.61 3.57 45.01 0.16 5.77 16 15 H 0.13 3.58 8.14 -2.39 -0.02 3.56 16 16 N -0.15 -5.63 3.70 -169.32 -0.63 -6.25 16 17 N -0.28 -11.42 6.06 -56.86 -0.34 -11.77 16 18 C -0.06 -2.07 12.20 85.11 1.04 -1.03 16 19 C -0.03 -0.80 12.20 85.11 1.04 0.24 16 20 N -0.32 -11.10 12.05 -56.86 -0.69 -11.79 16 21 C -0.11 -4.62 4.86 30.61 0.15 -4.47 16 22 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 23 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 24 H 0.05 2.93 6.07 -2.39 -0.01 2.91 16 25 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 26 H 0.07 2.80 5.47 -2.39 -0.01 2.78 16 27 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 28 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.21 5.46 8.06 -2.91 -0.02 5.43 16 30 H 0.23 4.14 8.06 -2.91 -0.02 4.11 16 31 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -67.19 254.88 5.25 -61.94 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: 1.10 Total: 13.47 kcal Atomic # 6 Polarization: -42.34 SS G_CDS: 3.53 Total: -38.81 kcal Atomic # 7 Polarization: -81.85 SS G_CDS: -1.41 Total: -83.26 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -67.19 5.25 -61.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260978808.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.499 kcal (2) G-P(sol) polarization free energy of solvation -67.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds